Theoretical investigation of the molecular structure and spectroscopic properties of oxicams

Nonsteroidal anti-inflammatory drugs (NSAIDs) are among the most frequently prescribed drugs and have multiple therapeutic uses. These drugs are predominantly used for the treatment of musculoskeletal diseases because of their analgesic, antipyretic, and antiplatelet activities. Oxicams constitute an interesting class of organic compounds and have been investigated in the search for new analgesic and anti-inflammatory drugs. In the present work, a theoretical investigation of the molecular structure and spectroscopic properties of a series of five oxicams in different solvents was performed using density functional theory (DFT) methods. The geometric optimizations of the oxicams were carried out using the M06 density functional and the CBSB7 basis set. The infrared data were all obtained at the same theoretical level. The UV-Vis absorption and NMR data of some oxicams were calculated using the DFT and CBSB3 basis sets. The analysis of structural parameters, particularly the bond length and spectroscopic data, indicated that interactions occurred between the hydrogen bond types for 4-meloxicam, isoxicam, and normeloxicam. Stereoelectronic interactions caused by the substitution of alkyl groups caused the bond lengths to elongate. Similarly, the substitution of heteroatoms, such as nitrogen, sulfur, or oxygen, increased the bond lengths and angular stresses.     

Theoretical study of tetrahydrofuran: Comparative investigation of spectroscopic and structural properties between gas and liquid phases

Rovibrational spectroscopic constant of tetrahydrofuran (THF) dimer have been calculated starting from three potential energy curves, each one obtained in a different way: (i) by ab initio calculations at MP2/aug‐cc‐pVDZ level; (ii) using Lennard‐Jones liquid parameters available in the literature, and (iii) from the pair obtained through Monte Carlo Simulation of liquid THF. The comparison among these results allowed the characterization of many solvent effect contributions. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

An integrated experimental and theoretical investigation of the structural and spectroscopic properties of two nickel(II) isothiosemicarbazone complexes

Two nickel(II) isothiosemicarbazone complexes of dianionic 5-bromosalicylaldehyde S-allyl isothiosemicarbazonehydrobromide (H₂L.HBr), [Ni(Im)L] and [Ni(2-MeIm)L] (Im: imidazole, 2-MeIm: 2-methylimidazole), were synthesized and characterized by single crystal X-ray crystallography, ¹H NMR spectrometry, IR, and electronic spectroscopy. The complexes have square-planar geometry and the ligand is coordinated as a dinegative tridentate chelating agent via phenolic oxygen, isothioamide nitrogen, and azomethine nitrogen atoms. To complement the experimental data, density functional theory (DFT) and time-dependent DFT methods were used to validate the structural parameters and infrared and electronic spectra.     

Synthesis and spectroscopic investigation of some dimeric coumarin and furanocoumarin models

Summary The synthesis of some dimeric coumarin and furanocoumarin models and their structure elucidation by¹H NMR,¹³C NMR, and mass spectroscopy is presented. In the presence of moisture some aldehydes are accompanied by their hydrates. Methoxy signal doubling in the presence of a chiral lanthanide shift reagent proves the dimeric nature of compound8. In the mass spectra, heterolytic cleavage of the O-C linkage was noticed which is a rare fragmentation in the case of aromatic ethers.

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Synthese und spektroskopische Untersuchung einiger dimerer Cumarin- und Furanocumarinmodelle

Zusammenfassung Die Synthese einiger dimerer Cumarin- und Furanocumarin-Modellverbindungen und ihre Strukturaufklärung mit¹H- und¹³C-NMR- sowie Massenspektrometrie werden beschrieben. In Gegenwart von Feuchtigkeit werden einige der Aldehyde von ihren Hydraten begleitet. Verdoppelungen der Methoxy-¹H-Signale von8 in Anwesenheit eines chiralen Lanthanoid-Verschiebungsreagenzes beweisen, daß8 ein Dimer ist. In den Massenspektren finden sich Hinweise für heterolytische Spaltungen der O-C-Bindungen. Solche Fragmentierungen sind bei aromatischen Ethern ungewöhnlich.

     

Theoretical studies on the structural,spectroscopic, thermodynamic,and electronic properties of zoledronic acid

The structure, spectroscopic, thermodynamic, and electronic properties of zoledronic acid (ZL, 1-hydroxy- 2-(1H-imidazol-1-yl)ethane-1,1-diyldiphosphonic acid), typical third-generation nitrogen-containing bisphosphonates (N-BPs), have been investigated systematically. Six conformations are taken into account, including three unprotonated and three protonated structures. They are optimized by four different density functional theory (DFT) methods combined with four different basis sets to evaluate their performance in predicting the structural and spectral features of ZL. Thermodynamic properties are calculated based on the harmonic vibrational analysis, including the standard heat capacity (C _p,m ⁰ ), entropy (S _m ⁰ ), and enthalpy (S _m ⁰ ). The ¹H and ¹³C NMR chemical shifts are calculated using the GIAO method and compared with the experimental data. Molecular electrostatic potential (MEP) and frontier molecular orbital (FMO) analyses are also performed to study the electronic characteristics of the title compound.     

Theoretical study of ultrafast heterogeneous electron transfer reactions at dye-semiconductor interfaces: coumarin 343 at titanium oxide

A theoretical study of photoinduced heterogeneous electron transfer in the dye-semiconductor system coumarin 343-TiO(2) is presented. The study is based on a generic model for heterogeneous electron transfer reactions, which takes into account the coupling of the electronic states to the nuclear degrees of freedom of coumarin 343 as well as to the surrounding solvent. The quantum dynamics of the electron injection process is simulated employing the recently proposed multilayer formulation of the multiconfiguration time-dependent Hartree method. The results reveal an ultrafast injection dynamics of the electron from the photoexcited donor state into the conduction band of the semiconductor. Furthermore, the mutual influence of electronic injection dynamics and nuclear motion is analyzed in some detail. The analysis shows that--depending on the time scale of nuclear motion--electronic vibrational coupling can result in electron transfer driven by coherent vibrational motion or vibrational motion induced by ultrafast electron transfer.     

Theoretical investigation on the structural and thermodynamic properties of FeSe at high pressure and high temperature

A theoretical investigation on structural and thermodynamic properties of 11-type iron-based superconductor FeSe at high pressure and high temperature was performed by employing the first-principles method based on the density functional theory. Some structural parameters of FeSe in both tetragonal and hexagonal phases are reported. According to the fourth-order Birch-Murnaghan equation of states, the transition pressure P(t) of FeSe from the PbO-type phase to the NiAs-type phase was determined. The calculated results are found to be in good agreement with the available experimental data. Based on the quasi-harmonic Debye model, the pressure and temperature dependence of the thermodynamic properties for hexagonal phase FeSe were investigated. Our theoretical calculations suggest that the pressure and temperature have significant effects on the heat capacity, vibrational internal energy, vibrational entropy, vibrational Helmholtz free energy, thermal expansion coefficient and Debye temperature. Even though few theoretical reports on the structural properties of FeSe are found in the current literature, to our knowledge, this is a novel theoretical investigation on the structural and thermodynamic properties of FeSe at high temperature. We hope that the theoretical results reported here can give more insight into the structural and thermodynamic properties of other iron-based superconductors at high temperature.     

Theoretical investigation of the influence of ligands on structural and electronic properties of indium phosphide clusters

Results of a theoretical study of the effects of including ligands on stoichiometric In(n)P(n) clusters are presented. We apply a parametrized density-functional method and consider clusters with n up to above 70. As ligands we consider H atoms and CH3 groups, and the results are compared with our earlier ones for the naked clusters. We find that the ligands lead to only smaller structural changes but that an enhanced In-to-P electron transfer in the outermost parts of the clusters, which we observed for the naked clusters, is largely suppressed, so that there is a more homogeneous In-to-P transfer throughout the whole cluster. Adding the ligands leads, in most cases, to an increase in the HOMO-LUMO gap and, therefore, also to an increase in the stability of the clusters. However, we find also that the HOMO-LUMO gap depends critically on the type, sites, and number of ligands that are added.     

Theoretical investigation of the excited states of coumarin dyes for dye-sensitized solar cells

Using time-dependent density functional theory (TD-DFT), configuration interaction single (CIS) method, and approximate coupled cluster singles and doubles (CC2) method, we investigated the absorption spectra of coumarin derivative dyes (C343, NKX-2388, NKX-2311, NKX-2586, and NKX-2677), which have been synthesized for efficient dye-sensitized solar cells. The CC2 calculations are found in good agreement with the experimental results except for the smallest coumarin dye (C343). TD-DFT underestimates the vertical excitation energy of the larger coumarin dyes (NKX-2586 and -2677). Solvents (methanol) are found to induce a red shift of the vertical excitation energies, and their effects on the molecular geometry and the electronic structure are examined in detail. The deprotonated form of coumarin is also investigated, where a blue shift of the vertical excitation energies is observed.     

Theoretical studies on the structure and spectroscopic properties of pseudohalides

Pseudohalogen-containing compounds have attracted significant interest among nonmetal chemists and theorists, not only owing to their potential use in various fields but also due to difficulties in their experimental preparation and characterization. Since its introduction in 1925, the pseudohalide principle has been used extensively and, therefore, a remarkable progress has been made in the experimental and theoretical research on the compounds of this kind. In this work, we review studies on structural investigations and theoretical characterizations of several pseudohalide-containing compounds in order to contribute to better understanding of the chemistry of many such species.     

Theoretical studies on structural and spectroscopic properties of photoelectrochemical cell ruthenium sensitizers,derivatives of AR20

Special efforts were devoted to improve the absorption behavior of AR20 in visible region. Density functional theory (DFT)‐based approaches were applied to explore the electronic structure properties of AR20 and its derivatives. Time‐dependent DFT results indicate that the ancillary ligand controls the molecular orbital (MO) energy levels and masters the absorption transition nature. The deprotonation of anchoring ligand not only affects the frontier MO energy levels but also determines the energy gaps of highest occupied MO–lowest unoccupied MO (LUMO) and LUMO–LUMO+1. Introducing thiophene groups into ancillary ligands would enhance the efficiency of the final dye‐sensitized solar cell (DSSC). The absorption intensity of the thiophene substituted derivatives of AR20 is irrelevant with environment circumstance change, such as pH value. This special nature prognosticates the thiophene‐substituted derivatives of AR20 which would have a broad application in DSSC. © 2012 Wiley Periodicals, Inc.     

Photoinduced ultrafast dynamics of coumarin 343 sensitized p-type-nanostructured NiO films

Photoinduced electron transfer from the valence band of nanocrystalline NiO, a p-type semiconductor, to an excited bound dye, coumarin 343, and the subsequent recombination have been measured by femtosecond transient absorbance spectroscopy probing with white light. It was found that both processes are nonexponential. The photoinduced electron transfer from the semiconductor to the excited bound dye has an ultrafast component (approximately 200 fs), which is comparable to the time constants measured for photoinduced electron injection in C343-TiO2 colloid solutions. The process is very efficient and constitutes the main path of deactivation of the excited dye. Back electron transfer is also remarkably fast, with the main part of the recombination process happening with a time constant of approximately 20 ps. Dye-sensitized nanostructured p-type semiconductors are attractive materials due to their potential use as photocathodes in dye-sensitized solar cells and solid electrolytes in solid-state dye-sensitized solar cells. To our knowledge, this is the first time that the photoinduced electron-transfer kinetics of a sensitized p-type semiconductor has been studied.     

Theoretical modeling of the spectroscopic absorption properties of luciferin and oxyluciferin: A critical comparison with recent experimental studies

Firefly luciferin and its oxidated form, oxyluciferin, are two heterocyclic compounds involved in the enzymatic reaction, catalyzed by redox proteins called luciferases, which provides the bioluminescence in a wide group of arthropods. Whereas the electronic absorption spectra of d-luciferin in water at different pHs are known since 1960s, only recently reliable experimental electronic spectra of oxyluciferin have become available. In addition oxyluciferin is involved in a triple chemical equilibria (deprotonation of the two hydroxyl groups and keto-enol tautomerism of the 4-hydroxythiazole ring), that obligates to select during an experiment a predominant species, tuning pH or solvent polarity besides introducing chemical modifications. In this study we report the absorption spectra of luciferin and oxyluciferin in each principal chemical form, calculated by means of perturbed matrix method (PMM), which allowed us to successfully introduce the effect of the solvent on the spectroscopic absorption properties, and compare the result with available experimental data.     

X-ray structural and13C NMR spectroscopic investigation of 4,7-diaminocoumarins

An x-ray structural study has been made of 7-diethylaminocoumarin and 4-morpholino-7-diethylaminocoumarin. A study has been made of the¹³C NMR spectra of these compounds and other 4,7-diaminocoumarins, in CDCl₃, and in acidic media. These studies have established that the site of first protonation is the nitrogen atom in position 7, and the site of the second protonation is the lactone oxygen atom. It is concluded that the 4-amino group is effectively conjugated with the carbonyl group in 4,7-diaminocoumarins.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 4, pp. 802–810, April, 1991.     

Theoretical investigation into the structural, thermochemical, and electronic properties of the decathio[10]circulene

For the first time, a theoretical study has been performed on the prototypical decathio[10]circulene (C(20)S(10)) species, which is an analogue of the novel octathio[8]circulene "Sulflower" molecule (C(16)S(8)). Examinations of the singlet and triplet states of C(20)S(10) were made at the B3LYP/6-311G(d) level. Local minima of C(2) and C(s) symmetry were found for the lowest singlet and triplet states, respectively. The stability of C(20)S(10) was assessed by calculating the ΔH°(f) of C(16)S(8) and C(20)S(10) and the ΔH(o) for their decomposition into C(2)S units. Frontier molecular orbital plots show that structural adjacent steric factors along with the twist and strain orientations of C(20)S(10) do not disturb the aromatic π-delocalizing effects. In fact, C(20)S(10) maintains the same p(z) HOMO character as C(16)S(8). These similarities are further verified by density-of-states characterization. Calculated infrared spectra of C(16)S(8) and C(20)S(10) show broad similarities. Molecular electrostatic potential results reveal that eight of the peripheral sulfur atoms are the most electronegative atoms in the molecule, while the interior ten-membered ring exhibits virtually no electronegativity.     

Effect of substituents on redox, spectroscopic and structural properties of conjugated diaryltetrazines--a combined experimental and theoretical study

Two series of new soluble conjugated compounds containing tetrazine central ring have been synthesized. The three-ring compounds have been synthesized by the reaction of aryl cyanide (where aryl = thienyl, alkylthienyl, phenyl or pyridyl) with hydrazine followed by oxidation of the intermediate product with diethyl azodicarboxylate. The five-ring compounds have been prepared using two pathways: (i) reaction of 5-cyano-2,2'-bithiophene (or its alkyl derivative) with hydrazine; (ii) via Suzuki or Stille coupling of 3,6-bis(5-bromo-2-thienyl)-1,2,4,5-tetrazine with a stannyl or boronate derivative of alkylthiophene. UV-vis spectroscopic properties of the synthesized compounds are strongly dependent on the nature of the aryl group, the position of the solubilizing substituent and the length of the molecule, showing the highest bathochromic shift (λ(max) > 440 nm) for five-ring compounds with alkyl groups attached to C(α) carbon in the terminal thienyl ring. An excellent linear correlation has been found for spectroscopically determined and theoretically calculated (TD-B3LYP/6-31G*) excitation energies. With the exception of dipyridyl derivative, the calculated lowest unoccupied molecular orbital (LUMO) level of the investigated molecules changes within a narrow range (from -2.63 to -2.41 eV), in line with the electrochemical data, which show a reversible reduction process with the redox potential varying from -1.23 V to -1.33 V (vs. Fc/Fc(+)). The electrochemically determined positions of the LUMO levels are consistently lower by 0.9 to 1.2 eV with respect to the calculated ones. All molecules readily crystallize. Single crystal studies of 3,6-bis(2,2'-bithien-5-yl)-1,2,4,5-tetrazine show that it crystallizes in a P2(1)/c space group whose structural arrangement is not very favorable to the charge carriers flow within the crystal. Powder diffraction studies of other derivatives have shown that their structural organization is sensitive to the position of the solubilizing substituent. In particular, the presence of alkyl groups attached to C(α) carbon in the terminal thienyl ring promotes the formation of a lamellar-type supramolecular organization.     

Theoretical investigation of structural and thermo-mechanical properties of thoria up to 3300 K temperature

We investigated thermo-mechanical properties of thoria up to a very high temperature (3300 K). We demonstrate that, using first-principles molecular dynamics, it is possible to predict thermal expansion of thoria in agreement with experiment. The new generalized gradient approximation functional within the density functional theory predicts, in agreement with experiment, not only the relative thermal expansion but also the absolute values of the lattice constant as a function of temperature. The molecular dynamics approach has an advantage over the previously used quasi-harmonic method, because it can be used even at temperatures (above 2700 K) where the longitudinal optical mode breaks in thoria. The calculated phonon dispersion agrees well with the experimental relation, measured using inelastic neutron scattering. The temperature, at which the negative frequency in the optical mode appears, coincides with the λ-type pre-melting transition reported in thoria.     

Theoretical investigation on the spectroscopic properties of furylfulgide with different substituents and design of novel bis‐furylfulgimide photochromes

Density functional theory and time‐dependent density functional theory were employed to theoretically analyze the effect of different substituents on the spectroscopic properties of furylfulgide. The result shows that the absorption spectra of ring‐closed isomer which substituted by an electron‐donating group (NH₂) at the R₃‐position of furylfulgide has an evident bathochromic shift compared with the others. Due to the steric hindrance effect, the difference of absorption wavelength was evidently enlarged by introducing several representative electron‐withdrawing groups at the R₆‐position of furylfulgide. In addition, we also designed a series of novel dimers which combined two furylfulgimide monomers into one new molecule. The relevant frontier molecular orbitals, energy levels and absorption properties were analyzed in detail by the calculation of low‐lying excited states. Finally, taking BFF‐6 (bis‐furylfulgimide) for an example, we discussed the transformation mechanism of four stable isomers in the toluene solution. Our conclusions manifest that the asymmetrical BFF‐6 can act as a potential multifunctional molecular switch in consideration of its distinguishable absorption bands and reversible conversion process. We hope that this research will be beneficial to design more practical and efficient molecular switch for further applications.     

Theoretical investigation on the spectroscopic properties of cyclometallated iridium (III) complexes and the deprotonation influence on them in solution

Electronic structures and spectroscopic properties of mixed‐ligand cyclometallated iridium complexes with general formula [Ir(N?C)₂(N?N)]⁺ (N?C = 2‐phenylpyridine, N?N = Hcmbpy = 4‐carboxyl‐4^′‐methyl‐2,2^′‐bipyridine, 1 ; H₂dcbpy = 4,4^′‐dicarboxyl‐2,2^′‐bipyridine, 2 ) were studied theoretically. The geometries of the complexes in ground and excited state were optimized at B3LYP and CIS levels, respectively. The absorption and emission of the complexes in CH₃CN solutions were calculated by time‐dependent density functional theory (TD‐DFT) with the PCM solvent model. The calculated absorptions and emissions of the complexes are in good agreement with the measured results. The deprotonation influence on the electronic structure and the optical properties of 2 was also investigated. The results indicate that the deprotonation which occurs on the COOH groups influences the geometries of the complexes in ground and excited state slightly but leads to significant blue‐shifts in low energy absorption and emission maximum. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2010