Exonucleolytic degradation of high-density labeled DNA studied by fluorescence correlation spectroscopy

The exonucleolytic degradation of high-density labeled DNA by exonuclease III was monitored using two-color fluorescence correlation spectroscopy (FCS). One strand of the double stranded template DNA was labeled on either one or two base types and additionally at one end via a 5' Cy5 tagged primer. Exonucleolytic degradation was followed via the diffusion time, the brightness of the remaining DNA as well as the concentration of released labeled bases. We found a hydrolyzation rate of about 11 to 17 nucleotides per minute per enzyme (nt/min/enzyme) for high-density labeled DNA, which is by a factor of about 4 slower than for unlabeled DNA. The exonucleolytic degradation of a 488 base pair long double stranded DNA resulted in a short double stranded DNA segment of 112 ± 40 base pairs (bp) length with two single-stranded tails.     

Penetration of pyrene and its derivatives into polystyrene latex particles as studied by fluorescence spectroscopy

Small hydrophobic pores (channels) in polystyrene latex particles were found by investigating the penetration of pyrene using fluorescence techniques.     

Properties of confined and sheared rhodamine B films studied by SFA-FECO spectroscopy

We have used a surface forces apparatus and multiple beam interferometry to measure the absorbance of thin films of rhodamine B in water/ethylene glycol solutions while applying and measuring normal and lateral (shear) forces. Both normal and shear forces induced changes in the absorption spectra indicating a change in molecular alignment, and rhodamine-rhodamine and rhodamine-surface interactions. We also measured differences in the absorbance spectra in different regions of the contact indicating, as expected, that the stresses are not uniform throughout the contact area. We also observed crystallization (solidification) parallel to the shearing direction.     

Ordering and mobility of ferroelectric liquid crystal dimer as studied by FT-IR spectroscopy with 2D-IR correlation analysis

Both a conservative rapid-scan FT-IR technique and a novel step-scan FT-IR technique with 2D correlation analysis were used to study the orientation and the mobility of a ferroelectric liquid crystal dimer during switching under an electric field. The detailed mutual arrangements of different molecular segments (mesogen, poly(methylene) chain, polysiloxane chain) in a smectic C* phase were derived from the static spectra. It was shown that the long mesogen axis, the average poly(methylene) and the average polysiloxane chain axes do not coincide with each other. The hindered rotation of the carbonyl group is confirmed. Time-resolved FT-IR technique was used to follow the segmental motion with a time resolution of 5 μs. The temperature and electric field strength dependencies of the mobility of these segments are discussed. 2D correlation analysis of time-resolved data reveals small differences in the behavior of the carbonyl and the benzoic rings in the mesogen moieties, that can be explained as differences in the orientation distribution functions of these moieties.     

Synthesis and properties of novel polymers having S-methyldibenzothiophenium salt moieties

A polymer having dibenzothiophenium salt moieties [poly(sulfonium salt), 2 ] was prepared by the reaction of poly(2-vinyldibenzothiophene) ( 1 ) with CH₃I and AgBF₄ in CH₂ClCH₂Cl at room temperature for 24 h. The obtained polymer 2 was found to contain 71% of the methyldibenzothiophenium tetrafluoroborate unit. A monomer carrying the sulfonium salt moiety, i.e., 5-methyl-2-vinyldibenzothiophenium tetrafluoroborate ( 4 ), was independently prepared and subjected to radical polymerization to give a polymer ( 5 ) in 88% yield (methyldibenzothiophenium tetrafluoroborate unit: 79%). The thermal decompositions of 2 and 5 took place in two steps; the first step involved the formation of polymer 1 by demethylation. © 1998 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 36: 1779–1784, 1998     

Synthesis of a polyamidoamine dendron-bearing lipid having sugar moieties and its use for preparation of nonviral gene vectors

We have so far developed a new type of cationic lipid that consists of an amine-terminated poly(amidoamine) dendron and two long alkyl chains. In this study, we designed a dendron-bearing lipid (DL) modified with sugar moieties as the ligand at the terminal groups of the dendron to improve the transfection activities. We combined lactobionic acid at the end of every dendritic branch of the DL to produce galactose moieties-attached DL (Gal-DL). The lipoplexes containing Gal-DL exhibited enhancement of transfection of HepG2 cells. Moreover, Gal-DL significantly promoted the transfection activity of the lipoplexes including poly(ethylene glycol)-attached dendron-bearing lipid (PEG-DL).     

Synthesis and thermal dissociation of polymers having hemiacetal ester moieties

Polymers having hemiacetal ester moieties in the side chain were synthesized and their thermal dissociation was examined. 1‐Alkoxyethyl methacrylates (1) were synthesized from methacrylic acid with alkyl vinyl ethers and their radical copolymerizations with butyl methacrylate were carried out at 80°C for 6.5 h using AIBN as an initiator to afford the corresponding copolymers having the hemiacetal ester moieties in the side chain. The hemiacetal ester moieties in the copolymers thermally converted to carboxyl groups with elimination of the corresponding vinyl ethers. The thermal dissociation of the hemiacetal ester moieties in the side chain obeyed first‐order kinetics at 140°C, and their reactivities were in the following order: 1‐(tert‐butoxy)ethyl > 1‐isopropoxyethyl > 1‐ethoxyethyl > 1‐butoxyethyl ester. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 609–614, 1999     

Photochromic behaviour of ozonated and photoirradiated cellulose studied by fluorescence spectroscopy

Samples of ozonated pure cotton cellulose have been subjected to three extended periods of irradiation with monochromatic light at 350 nm, with intervening dark periods. The changes during the treatments were monitored using fluorescence spectroscopy. Photochromic behaviour, comprising a fairly rapid emission intensity decrease during irradiation and a slower recovery of the emission intensity in the dark at ambient temperature, was observed. Starting from the completion of the first irradiation/dark treatment the intervening dark reaction almost completely restored the situation prevailing before irradiation. The photochromism observed for a reference sample of cellulose not pretreated with ozone and for microcrystalline cellulose was similar but differed both in amplitude and in fluorescence recovery during the dark periods. The ozonated sample was also irradiated with the entire spectrum of a medium pressure Hg lamp. This treatment caused a strong increase in the emission intensity and a red-shift of the emission maximum. The changes caused by ozonation and irradiation were also studied by diffuse reflectance FT-IR and UV-visible reflectance spectroscopy.     

Simultaneous determination of sulpiride and its alkaline degradation product by second derivative synchronous fluorescence spectroscopy

Simple and sensitive synchronous fluorimetric, and second derivative synchronous fluorometric methods were developed for the validated and simultaneous determination of sulpiride (SLP) and its alkaline degradation product (DSLP). The method is based on measuring the synchronous fluorescence of both the drug and its degradation product in borate buffer of pH 8 at Δλ of 45 nm. The peak amplitude (²D) was measured at 295.5 and 342 nm for SLP and DSLP, respectively. The different experimental parameters affecting the synchronous fluorescence intensity of both compounds were studied and optimized. The fluorescence-concentration plots were rectilinear over the range of 0.05-1.0 and 2-10 μg mL⁻¹ for SLP and DSLP, respectively. The limits of detection (LOD) were 0.02 and 0.4 μg mL⁻¹ and quantification limits (LOQs) were 0.05 and 1.2 μg mL⁻¹ for SLP and DSLP, respectively. The proposed methods were successfully applied to commercial capsules and tablets. Statistical comparison of the results with those of the official method revealed good agreement and proved that there were no significant difference in the accuracy and precision between the two methods, respectively. The method was utilized to study the kinetics of the alkaline induced degradation of the drug. The application was further extended to include the in vivo and in vitro determination of sulpiride. The mean % recoveries (n = 3) were 100.22 ± 2.04 and 92.00 ± 3.00 for spiked and real human plasma, respectively.     

Griseofulvin and ketoconazole solubilization by bile salts studied using fluorescence spectroscopy

The capacity of solubilization of the five physiological bile salts: cholate, deoxicholate, hiocholate, quenodeoxicholate and taurocholate were assayed on two low aqueous soluble antimicotic agents: griseofulvin and ketoconazole. The fluorescence emission of these antimicotic agents was used as tool to study their solubilization in bile salts micelle. Griseofulvin enhanced its fluorescence and shifted to the blue in the presence of bile salts micelles. The shift was dependent of the polarizability of the micelle zone where the antimicotic is located. Cholate and deoxicholate showed a good solubilization capacity for griseofulvin: 321 mol and 394 mol surfactant per mol of antimicotic, respectively. These values decreased in the presence of NaCl in agreement with a compactness of the micelle due to an electrostatic repulsion decreasing between the bile salts monomer negatively charged. The imidazole and piperazine rings present in the ketoconazole molecule give to this the capacity of fluorescence emission with two vibronic bands at 364 nm and 382 nm, respectively. The solubilization in cholate micelle induced an increase in the band at 382 nm, while deoxicholate induced the opposite effect, suggesting a strong intercation between the polar groups of ketoconazole molecule (imidazole and piperazine rings) and the OH of these bile salts. The solubilization capacities were 47 mol and 117 mol surfactant per ketoconazole mol for cholate and deoxicholate, respectively. The other bile salts assayed did not show any appreciable solubilization capacity. Ketoconazole and griseofulvin solubilized in micelles of cholate and deoxicholate were stable during the thermal recycling treatment for over 100 days.     

Excitation and decay processes in helium clusters studied by fluorescence spectroscopy

Excitation and decay processes of helium clusters are investigated with fluorescence methods. The results differ remarkably from that obtained for the heavier rare gas clusters. They are discussed in view of the unusual structural and electronic properties of helium.     

Synthesis and complexation of a novel cyclophane

A novel cyclophane, 17, 17, 40, 40-tetramethyl-7, 30-dinitro-1, 10, 24, 33-tetraoxa[2.2.1.2.2.1] metaparaparametaparaparacyclophane, was synthesized by 2:2 cyclization of 3,5-bis(bromomethyl)nitrobenzene, derived from 3,5-dimethylnitrobenzene, and bisphenol A. The cyclophane was found to form 1:1 complex with benzene.     

Overcharging of polyelectrolyte complexes by the guest polyelectrolyte studied by fluorescence spectroscopy

Polyion complexes (PICs) of anionic block copolymer poly(ethylene oxide)-block-poly(sodium methacrylate), PEO-block-(PMA)Na, and a cationic homopolymer, poly((methacryloyloxyethyl)trimethylammonium chloride), PMOTAC, have been studied by fluorescence spectroscopy. Pyrene and naphthalene singly labeled block copolymers were used with two different sodium methacrylate block lengths. The chain exchange between the stoichiometric PICs at the equilibrium state and the formation of the negatively charged PICs on addition of excess PEO-block-(PMA)Na to stoichiometric PIC solution were of interest. The chain exchange between the stoichiometric complexes was observed to occur via two mechanisms. The faster chain exchange occurs via insertion and expulsion of single chains, while merging and splitting of the PIC particles is behind the slower chain exchange event. Incorporation of an excess amount of the guest polyion into a stoichiometric PIC took place on further addition of the PEO-block-(PMA)Na. The same mechanisms were recognized in the overcharging process of the PICs as in the chain exchange between the stoichiometric PICs.     

Interaction of human serum albumin with bendroflumethiazide studied by fluorescence spectroscopy

The interactions between bendroflumethiazide (BFTZ) and human serum albumin (HSA) have been studied by fluorescence spectroscopy. Binding constants for drug attachment to the various binding sites of HSA have been measured at different temperatures in physiological buffer solution. The effect of metal ions on BFTZ interaction with HSA was also investigated. The thermodynamic parameters, DeltaH and DeltaS, have been calculated to be 49.28kJmol(-1)>0, and 258.83Jmol(-1)K(-1)>0, respectively. The distance between HSA and BFTZ, r, was determined to be 1.47nm based on F?rster's non-radiative energy transfer theory. The experimental results reveal that BFTZ has a strong ability to quench the intrinsic fluorescence of HSA through a static quenching mechanism. Furthermore, the binding constants between BFTZ and HSA are remarkably independent of temperature, and decrease in the presence of various ions, usually by about 30-55%. Hydrophobic interaction occurs between BFTZ and the sub-domain II A of HSA.     

Absorption and fluorescence spectroscopy of rhodamine 6G in titanium dioxide nanocomposites

A comparison has been made between the spectroscopic properties of the laser dye rhodamine 6G (R6G) in mesostructured titanium dioxide (TiO(2)) and in ethanol. Steady-state excitation and emission techniques have been used to probe the dye-matrix interactions. We show that the TiO(2)-nanocomposite studied is a good host for R6G, as it allows high dye concentrations, while keeping dye molecules isolated, and preventing aggregation. Our findings have important implications in the context of solid state dye-lasers and microphotonic device applications.     

Laser induced fluorescence spectroscopy of a mixed dimer between 2-pyridone and 7-azaindole

We report here the laser induced fluorescence excitation (FE) and dispersed fluorescence (DF) spectra of a 1:1 mixed dimer between 7-azaindole (7AI) and 2-pyridone (2PY) measured in a supersonic free jet expansion of helium. Density functional theoretical calculation at the B3LYP/6-311++G** level has been performed for predictions of the dimer geometry and normal mode vibrational frequencies in the ground electronic state. A planar doubly hydrogen-bonded structure has been predicted to be the most preferred geometry of the dimer. In the FE spectrum, sharp vibronic bands are observed only for excitation of the 2PY moiety. A large number of low-frequency vibronic bands show up in both the FE and DF spectra, and those bands have been assigned to in-plane hydrogen bond vibrations of the dimer. Spectral analyses reveal Duschinsky-type mixing among those modes in the excited state. No distinct vibronic band structure in the FE spectrum was observed corresponding to excitations of the 7AI moiety, and the observation has been explained in terms of nonradiative electronic relaxation routes involving the 2PY moiety.     

Synthesis of an amphiphilic polymer having hydrophobic acetal and hydrophilic pyrrolidone moieties and its application to persisting release of aldehyde as a pro‐fragrance

A polymer having acetal moiety in the side chain was synthesized by a reaction of 1,3‐diol structure of poly(vinyl alcohol‐co‐N‐vinylpyrrolidone) and octanal. The hydrophobicity of the resulting acetal moiety and the hydrophilicity of the pyrrolidone moiety allowed the polymer to exhibit amphiphilicity. The polymer released octanal by hydrolysis of the acetal side chains under acidic conditions. The release of octanal was enhanced by the increased hydrophilicity of the polymer because of the presence of pyrrolidone moiety. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3816–3822, 2010     

Photophysical properties of tyrosine and its simple derivatives in organic solvents studied by time-resolved fluorescence spectroscopy and global analysis

Photophysical properties of tyrosine and its derivatives with free and blocked functional groups were studied by steady state and time-resolved fluorescence spectroscopy and global analysis in organic solvents, such as methanol, 2-propanol, tetrahydrofuran (THF), and dimethylsulfoxide (DMSO). The mono-exponential fluorescence intensity decays were observed for all tyrosine derivatives in THF and DMSO solutions, whereas in alcohols some derivatives have bi-exponential decays. The rotamer population calculated from 1H nuclear magnetic resonance spectroscopy in DMSO does not correspond to the pre-exponential factors obtained from fluorescence spectroscopy. Moreover in the case of DMSO, the strong interaction of this solvent with the hydroxyl group of the fluorophore's phenol ring causes substantial changes in the fluorescence and nonradiative rate constants of tyrosine derivatives compared with those of tyrosine with a blocked hydroxyl group, Tyr(Me). The steady state and time-resolved fluorescence measurements in pure organic solvents and water-organic solvent mixtures indicate that the fluorescence quenching of the phenol chromophore of tyrosine by an acetyl or amide group or both depends on the polarity of the solvent used as well as the ability of the solvent to form hydrogen bonds with functional groups of tyrosine.     

Malathion-induced inhibition of human plasma cholinesterase studied by the fluorescence spectroscopy method

The in vitro effect of technical grade malathion was assessed via the kinetic parameters of human plasma butyrylcholinesterase (BChE) using N-methylindoxyl acetate as a substrate for BChE. An inhibitor kinetics study demonstrated the existence of a biphasic inhibition curve, indicating high-and low-affinity binding sites of malathion. The IC ₅₀ values as calculated from the experimental inhibition curves were 1.33 × 10⁻⁹ and 1.48 × 10⁻⁵ M for the high-and low-affinity binding sites, respectively; Hill’s analysis gave 1.29 × 10⁻⁹ and 1.38 × 10⁻⁶ M. The Cornish-Bowden plots and their secondary plots indicated that the nature of inhibition was of mixed type with the predominant competitive character of both affinity binding sites. The article is published in the original.     

Comparison of rhodamine B degradation under UV irradiation by two phases of titania nano-photocatalyst

Titania (TiO₂) nano-photocatalysts, with different phases, prepared using a modified sol?Cgel process were employed in the degradation of rhodamine at 10?mg?L^?1 concentration. The degradation efficiency of these nano-photocatalysts was compared to that of commercial Degussa P25 titania. It was found that the nanocatalysts calcined at 450?°C and the Degussa P25 titania had similar photoreactivity profiles. The commercial Degussa P25 nanocatalysts had an overall high apparent rate constant of (K _app) of 0.023?min^?1. The other nanocatalyst had the following rate constants: 0.017, 0.0089, 0.003 and 0.0024?min^?1 for 450, 500, 550 and 600?°C calcined catalysts, respectively. This could be attributed to the phase of the titania as the anatase phase is highly photoactive than the other phases. Furthermore, characterisation by differential scanning calorimetry showed the transformation of titania from amorphous to anatase and finally to rutile phase. SEM and TEM characterisations were used to study the surface morphology and internal structure of the nanoparticles. BET results show that as the temperature of calcinations was raised, the surface area reduced marginally. X-ray diffraction was used to confirm the different phases of titania. This study has led to a conclusion that the anatase phase of the titania is the most photoactive nanocatalyst. It also had the highest apparent rate constant of 0.017?min^?1, which is similar to that of the commercial titania.