Three-dimensional modeling of genome macroarchitecture on the basis of its structural changes after the action of radiation

At present, after 120 years of theoretical and experimental studies, the problem of the genome macroarchitecture as the highest level of interphase chromosome organization in the nucleus of somatic cells is still open. The problem of spatial organization of interphase chromosomes in the haploid nucleus of germ cells has never been studied. The three-dimensional modeling of spatial organization of part of the haploid genome (the second chromosome) in Drosophila melanogaster mature sperms is performed using mathematical methods and the methods of visualization of macromolecular biostructures. The frequency and arrangement of inversion breaks for 72 structural vg mutants were used as genetic markers under the assumption that both ends of each inversion are brought together and form loops of an appropriate size. For taking into account the spatial proximity and visualization of loop structures of the chromosome, modern methods of three-dimensional modeling with application of splines, Open GL library, Delphi, and Gmax were used. According to the model developed, the whole second chromosome in the nucleus of mature sperms is probably arranged in the form of the megarosette-loop structure, which can be assumed to be the fundamental ordered form of the genome macroarchitecture in haploid germs of higher organisms.     

Histological approaches for high-quality imaging of zooplanktonic organisms

The investigation of the internal organization of zooplankton communities provides important information on the plankton biology with special interest for the study of ecological processes. Zooplanktoners can play a structural function as indicators for ecosystem health or stress, but their study using histological techniques is still limited. Here we report that the internal structure of zooplanktonic organisms can be facilely observed by a histological approach that combines optimal fixation and processing with a plastic resin (glycol methacrylate) embedding, resulting in increased tissue resolution. Using copepods, organisms that can dominate zooplankton assemblages, as models, collected from a tropical ecosystem (Paraibuna river, Brazil), we showed fine histological details of their muscular, nervous and digestive systems, structure of appendages and cell features. Critical advantages of this approach are that it permits optimal preservation and adequate handling of the organisms (embedded in agar after fixation) for further histological processing and investigation. This is important because it prevents both mechanically induced artifacts and loss of these diminutive organisms during the different steps of processing. Moreover, embedding in plastic resin showed a superior imaging of copepod internal structures compared to paraffin embedding. The use of glycol methacrylate is advantageous over paraffin/paraplast embedding by avoiding heat damage, tissue retraction and allowing faster embedding procedure and better tissue resolution. The value of histological approaches in enabling high-quality imaging of the internal structure of copepods is particularly important because these organisms can be used as indicators of environmental changes.     

In vitro degradation of AZ31 magnesium alloy coated with nano TiO2 film by sol-gel method

A nano TiO₂ film was coated on AZ31 alloy substrate by sol-gel method. The TiO₂ film was characterized by X-ray diffractometry (XRD), differential scanning calorimetry-thermogravimetric analysis (DSC-TG), field emission scanning electron microscopy (FE-SEM) and energy dispersion spectroscopy (EDS). The degradation of the nano-TiO₂ coated alloy was evaluated by immersion test and electrochemical measurement. An attempt was made to relate corrosion of coated alloys with the annealing treatment and resultant structural evolution.     

Plasma oxidation and stabilization of electrospun polyacrylonitrile nanofiber for carbon nanofiber formation

The effect of plasma treatment on the stabilization of copolymer P(AN-MA) containing 6.1 mol% methyl acrylate (MA) prepared by an electrospinning technique has been investigated at various oxygen contents (10 %, 20 % and 30 %) and different exposure times. The morphology and chemical structural evolution of electrospun and oxidized nanofibers were studied using field–emission scanning electron microscopy (FE-SEM), Fourier transform infrared (FT-IR) spectroscopy and differential scanning calorimetry (DSC). FT-IR analysis indicated that the treated nanofibers were effectively oxidized under different contents of oxygen and prolonged plasma exposure times by increasing the peak intensities of polar groups at 1730 and 3400 cm^?1 corresponding to C=O stretching band and OH stretching vibration mode, respectively. Additionally, a reduction in the extent of the cyclization reaction is observed with further increase in exposure times and contents of oxygen, which implies lower conversion of C≡N bands into C=N ones in the copolymer chain. According to the FE-SEM studies, the surfaces of the treated nanofibers were completely etched after 15 min of treatment due to the existence of strong ion bombardment and a reduction in the average fiber diameters was observed.     

Consequence of oxidant to monomer ratio on optical and structural properties of Polypyrrole thin film deposited by oxidation polymerization technique

This paper reports the effect of oxidant to monomer (O/M) ratio on optical and structural properties of Polypyrrole (PPy) thin film deposited by chemical oxidation polymerization technique. Noticeable changes have observed in the properties of PPy thin films with O/M ratio. Cauliflower structure have been observed in FE-SEM images, wherein grain size is observed to decrease with increase in O/M ratio. AFM results are in good agreement with FE-SEM results. From FTIR spectra it is found that, PPy is in highly oxidized form at low O/M ratio but oxidation decreased with increase in O/M ratio. Also C–C stretching vibrations of PPy ring is decreased whereas C=C stretching is increased with ratio. Absorption peak around 450 nm corresponds to π–π^⁎ transition and around 800 nm for polarons and bipolarons. The intensity of such peaks confirms the conductivity of PPy, which is observed maximum at low O/M ratio and found to decrease with increase in ratio. Optical band gap (BG) is found to increase from 2.07 eV to 2.11 eV with increase in the O/M ratio.     

Effect of laser incident energy on the structural,morphological and optical properties of Cu2ZnSnS4 (CZTS) thin films

The polycrystalline Cu₂ZnSnS₄ (CZTS) thin films have been prepared by pulsed laser deposition (PLD) method at room temperature. The laser incident energy was varied from 1.0 at the interval of 0.5–3.0 J/cm². The effect of laser incident energy on the structural, morphological and optical properties of CZTS thin films was studied by means of X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM), and optical absorption. The studies reveal that an improvement in the structural, morphological and optical properties of CZTS thin films with increasing laser incident energy up to 2.5 J/cm². However, when the laser incident energy was further increased to 3.0 J/cm², leads to degrade the structural, morphological and optical properties of the CZTS thin films.     

Correlation between structural and magnetic properties of substituted (Cd,Zr) cobalt ferrite nanoparticles

This work correlates the magnetic properties to the microstructure of the calcined nanocrystalline Cd_xCo_1-xZr_0.05Fe_1.95O₄ (0.0 ≤ x ≤ 0.3 in a step of 0.05) powders produced by Pechini sol–gel method. The dry gel was grinded and calcined at 700 °C in a static air atmosphere for 1 h. The thermal decomposition process of dried gel was studied by thermo gravimetric analysis (TGA) combined with differential analysis (DTA). Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM) and vibrating sample magnetometer (VSM) were carried out to investigate the structural bonds identification, crystallographic properties, morphology and magnetic properties of the obtained powders. The XRD pattern of the samples showed that the synthesized materials were of a single cubic phase with the nanocrystalline Co–Zr–Cd ferrite which had an average crystallite size of 32–40 nm and particle size of 55 nm resulted from FE-SEM. The magnetic properties were measured from the hysteresis loops. The magnetic measurements had indicated that the coercivity and the magnetization decreased by increasing the Cd content.     

Nucleation of quasi-crystalline and amorphous structures

Summary The structural characteristics of quasi-crystalline phases obtained by ion irradiation are compared with those of the corresponding amorphous structures. Chemical forces drive the formation of atomic clusters and their spatial organization under specific geometric constraints. The same elementary structural units exist in quasi-crystalline and glassy phases which display identical local order, their main difference being the degree of defect organization at the interface between locally ordered atomic groups. To speed up publication, the author of this paper has agreed to not receive the proofs for correction.     

Effects of high-intensity ultrasound on the structural,optical, mechanical and physicochemical properties of pea protein isolate-based edible film

Pea protein is a promising alternative to animal-based protein and the interest in its application in food industry has been rapidly growing. In this study, pea protein isolates (PPI) were used to form protein-based edible films and the effect of ultrasound treatment on the structure of PPI and the structural, optical, mechanical and physicochemical properties of PPI-films were investigated. Ultrasound induced unfolding of PPI and exposed interior hydrophobic groups to protein surface while both PPI dissociation and formation of large aggregates were observed, as confirmed by measuring intrinsic emission fluorescence, surface hydrophobicity, surface charge, and particle size distribution and polydispersity index, respectively. FE-SEM showed that ultrasound decreased the cracks and protein aggregates at the surface of PPI-film. The film structure was also investigated by FTIR, which showed peak shift in amide I and II region and noticeable difference of protein secondary structure as affected by ultrasound. As a result of such structural changes caused by ultrasound, the properties of PPI-films were improved. Results showed that ultrasound greatly improved the film transparency, significantly increased film tensile strength but not elongation at break, and decreased moisture content and water vapor permeability of the film. This study provided structural data as evidence for utilizing ultrasound technique to develop PPI-films with improved optical, mechanical and water barrier properties.     

Structural,magnetic, and dielectric properties of Ni–Zn ferrite and Bi_2O_3 nanocomposites prepared by the sol-gel method

Ni–Zn ferrite and Bi_2O_3 composites were developed by the sol-gel method. The structural, magnetic, and dielectric properties were studied for all the prepared samples. X-ray diffraction(XRD) was performed to study the crystal structure.The results of field emission scanning electron microscopy(FE-SEM) showed that the addition of Bi_2O_3 can increase the grain size of the Ni–Zn ferrite. Magnetic properties were analyzed by a hysteresis loop test and it was found that the saturation magnetization and coercivity decreased with the increase of Bi_2O_3 ratio. In addition, the dielectric properties of the Ni–Zn ferrite were also improved with the addition of Bi_2O_3.     

Fourier and power law analysis of structural complexity in cornea and lens

The ordered pattern of type I collagen fibrils in the transparent cornea is an example of specialization in the formation of functional ultrastructure. In contrast, the disordered and amorphous distribution of cytoplasmic proteins in the transparent lens resembles the structure of most cells. While the organization of cytoplasmic proteins is often considered to be random, the compartmentalization of functional proteins in biological cells and the organization provided by cytoskeletal elements suggests that non-random patterns of organization are common. Attempts to quantify disordered, amorphous patterns of ultrastructure in cells and tissues have been unsuccessful, in part, because the cellular organization of structural proteins including collagen, keratin, cytoskeletal and crystallin proteins is complex. Characterization of the complex patterns observed in electron micrographs is a fundamental problem in structural biology. This paper reviews the use of Fourier and power law analyses of electron micrographs of cornea and lens as models for ordered and disordered ultrastructure of cells and tissues.     

The universality and the future prospects of physiological energetics: Reply to comments on “Physics of metabolic organization”

In response to the comments on review “Physics of metabolic organization”, we discuss the universality and the future prospects of physiological energetics. The topics range from the role of entropy in modeling living organisms to the apparent ubiquity of the von Bertalanffy curve, and the potential applications of the theory in yet unexplored domains. Tradeoffs in outreach to non-specialists are also briefly considered.     

Computer-assisted quantification of the multi-scale structure of films made of nanofibrillated cellulose

Films made of nanofibrillated cellulose (NFC) are most interesting for use in packaging applications. However, in order to understand the film-forming capabilities of NFC and their properties, new advanced methods for characterizing the different scales of the structures are necessary. In this study, we perform a comprehensive characterisation of NFC-films, based on desktop scanner analysis, scanning electron microscopy in backscatter electron imaging mode (SEM-BEI), laser profilometry (LP) and field-emission scanning electron microscopy in secondary electron imaging mode (FE-SEM-SEI). Objective quantification is performed for assessing the (i) film thicknesses, (ii) fibril diameters and (iii) fibril orientations, based on computer-assisted electron microscopy. The most frequent fibril diameter is 20–30 nm in diameter. A method for acquiring FE-SEM images of NFC surfaces without a conductive metallic layer is introduced. Having appropriate characterisation tools, the structural and mechanical properties of the films upon moisture were quantified.     

Comparative study of ethanol sensor based on gold nanoparticles: ZnO nanostructure and gold: ZnO nanostructure

Gold colloid:ZnO nanostructures were prepared from Zn powder by using thermal oxidation technique on alumina substrates, then it was impregnated by gold colloid for comparative study. The gold colloid is the solution prepared by chemical reduction technique; it appeared red color for gold nanoparticle solution and yellow color for gold solution. The heating temperature and sintering time of thermal oxidation were 700 °C and 24 h, respectively under oxygen atmosphere. The structural characteristics of gold colloid:ZnO nanostructures and pure ZnO nanostructures were studied using filed emission scanning electron microscope (FE-SEM). From FE-SEM images, the diameter and length of gold colloid:ZnO nanostructures and ZnO nanostructures were in the ranges of 100-500 nm and 2.0-7.0 μm, respectively. The ethanol sensing characteristics of gold colloid:ZnO nanostructures and ZnO nanostructures were observed from the resistance alteration under ethanol vapor atmosphere at concentrations of 50, 100, 200, 500, and 1000 ppm with the operating temperature of 260-360 °C. It was found that the sensitivity of sensor depends on the operating temperature and ethanol vapor concentrations. The sensitivity of gold colloid:ZnO nanostructures were improved with comparative pure ZnO nanostructures, while the optimum operating temperature was 300 °C. The mechanism analysis of sensor revealed that the oxygen species on the surface was O²⁻.     

Morphologies of GaN one-dimensional materials

GaN one-dimensional materials with different morphologies were formed on LaAlO₃ crystal, silicon crystal and quartz glass substrates through a simple sublimation method. They were characterized by powder X-ray diffraction (XRD), field-emission scanning electron microscopy (FE-SEM) and energy-dispersive X-ray (EDX) spectroscopy. FE-SEM images showed that the morphologies of the one-dimensional materials included straight nanorods, curved nanowires, nanoribbons, zigzag nanorods and beaded or capture-tree nanorods. XRD and EDX studies indicated that all the one-dimensional materials were wurtzite GaN. Received: 14 July 2000 / Accepted: 17 July 2000 / Published online: 20 September 2000     

Microstructural characterisation of nanoparticles using, XRD line profiles analysis, FE-SEM and FT-IR

In this investigation, the structural characteristics of α- Fe₂O₃ nanoparticles synthesised by a mechanical milling have been explored. The structure and morphology of samples were characterized by X-ray powder diffraction, field-emission scanning electron microscope (FE-SEM) and FT-IR measurements. The crystallite size and internal strain were evaluated by XRD patterns using Williamson-Hall and Scherrer methods. The results did not reveal any phase change during the milling. The average particle size decreases with a prolongation of milling times, while the lattice parameters and internal strain increase. It was found that using this method allowed the formation of hematite nanoparticles.     

Green synthesis of silver nanoparticle-decorated porous reduced graphene oxide for antibacterial non-enzymatic glucose sensors

A simple and environmentally friendly approach was developed to fabricate silver nanoparticle (Ag NP)-decorated porous reduced graphene oxide (grGO) using glucose as a crosslinking and reducing agent. Physicochemical analysis, such as X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD), transmission electron microscopy (TEM), and field emission-scanning electron microscopy (FE-SEM) were used to confirm the structural, morphological characteristics of the as-prepared samples. The electrocatalytic activity of Ag/grGO towards glucose oxidation was examined by cyclic voltammetry and amperometry. The fabricated sensor showed excellent sensitivity of 725.0 μA cm^?2 mM^?1 with a rapid response time of 11 s. Furthermore, the hybrids showed significant antibacterial activity against Escherichia coli with 99.76% antibacterial efficiency after 18 h.     

Effect of the structural organization of polyamic-acid salt solutions on the morphology of Langmuir Monolayers of the prepolymer

The structure of Langmuir-Blodgett (LB) films formed from solutions of comblike N,N-dimethylhexadecylammonium polyamic-acid salt on the basis of the dianhydride of 3,3′,4,4′-diphenyl-tetracarboxylic acid and o-tolidine is studied by the AFM method. The structural organization of dilute solutions of the amphiphilic polyimide prepolymer in mixed solvents (DMAA-dioxane, DMAA-benzene, and MP-benzene) is studied by the method of polarized light scattering. The statistical structural parameters of the solutions are calculated using Debye-Stein theory. It is shown that the dimensions of ordered scattering formations depend on the chemical nature of the mixed solvent components. The parameters, characterizing the structure of the prepolymer solutions in various solvents, are compared. The dependence of the surface morphology of the LB films on the structural organization of the initial prepolymer solutions is revealed.     

Solvothermal synthesis of three-dimensional microspherical bismuth oxychloride self-assembled by microspheres

Uniform BiOCl microspheres have been synthesized via a facile solvothermal route. The structural features of the as-prepared BiOCl samples were systematically characterized by the X-ray powder diffraction (XRD), and field emission scanning electron microscopy (FE-SEM). The SEM characterization results indicated that BiOCl microspheres possessed a superstructure composed of several hierarchical microspheres, which were assembled by numerous two dimensional nanosheets. This kind of special BiOCl 3D microstructure exhibited a large BET surface area of about 14.24 m² g⁻¹. Besides, the photocatalytic properties of BiOCl hollow microsphere sample and sheet-like sample were investigated in detail. Significantly, BiOCl hollow microsphere sample presented faster degradation rate toward RhB even under visible light, which should be attributed to the unique BiOCl nanosheets self-assembled hollow microspheres.     

Preparation and characteristics of three-layer YSZ-(YSZ/Al2O3)-YSZ TBCs

Novel three-layer YSZ-(YSZ/Al₂O₃)-YSZ (6 wt.% Y₂O₃ partially stabilized ZrO₂) thermal barrier coatings (TBCs) were successfully prepared on Ni-based superalloy substrate using composite sol-gel and pressure filtration microwave sintering (PFMS) techniques. The coatings were evaluated for the cyclic oxidation resistance, thermal barrier effect and the presences of phases and microstructures. FE-SEM results indicate that the coatings were dense and crack-free. The coatings maintained their structural integrity when they were exposed at 1100 for 100 h. They exhibited superior oxidation resistance, spallation resistance and thermal insulation property compared with single-layer YSZ coatings. Moreover, the detailed mechanisms were discussed in order to understand the improved performance of the three-layer TBCs.