Combining UV photodissociation action spectroscopy with electron transfer dissociation for structure analysis of gas‐phase peptide cation‐radicals

We report the first example of using ultraviolet (UV) photodissociation action spectroscopy for the investigation of gas‐phase peptide cation‐radicals produced by electron transfer dissociation. z ‐Type fragment ions ^●Gly‐Gly‐Lys⁺, coordinated to 18‐crown‐6‐ether (CE), are generated, selected by mass and photodissociated in the 200–400 nm region. The UVPD action spectra indicate the presence of valence‐bond isomers differing in the position of the C_α radical defect, (α‐Gly)‐Gly‐Lys⁺(CE), Gly‐(α‐Gly)‐Lys⁺(CE) and Gly‐Gly‐(α‐Lys⁺)(CE). The isomers are readily distinguishable by UV absorption spectra obtained by time‐dependent density functional theory (TD‐DFT) calculations. In contrast, conformational isomers of these radical types are calculated to have similar UV spectra. UV photodissociation action spectroscopy represents a new tool for the investigation of transient intermediates of ion‐electron reactions. Specifically, z ‐type cation radicals are shown to undergo spontaneous hydrogen atom migrations upon electron transfer dissociation. Copyright © 2015 John Wiley & Sons, Ltd.     

Near‐Infrared Free‐Radical and Free‐Radical‐Promoted Cationic Photopolymerizations by In‐Source Lighting Using Upconverting Glass

A method is presented for the initiation of free‐radical and free‐radical‐promoted cationic photopolymerizations by in‐source lighting in the near‐infrared (NIR) region using upconverting glass (UCG). This approach utilizes laser irradiation of UCG at 975 nm in the presence of fluorescein (FL) and pentamethyldiethylene triamine (PMDETA). FL excited by light emitted from the UCG undergoes electron‐transfer reactions with PMDETA to form free radicals capable of initiating polymerization of methyl methacrylate. To execute the corresponding free‐radical‐promoted cationic polymerization of cyclohexene oxide, isobutyl vinyl ether, and N ‐vinyl carbazole, it was necessary to use FL, dimethyl aniline (DMA), and diphenyliodonium hexafluorophosphate as sensitizer, coinitiator, and oxidant, respectively. Iodonium ions promptly oxidize DMA radicals formed to the corresponding cations. Thus, cationic polymerization with efficiency comparable to the conventional irradiation source was achieved.     

Scavenging activity of C4‐hydroxyphenyl‐ and polyhydroxyphenyl‐1,4‐dihydropyridines toward free radicals

The radical‐scavenging ability of synthesized C4‐phenolic‐substituted 1,4‐dihydropyridines (1,4‐DHPs) toward 2,2‐diphenyl‐1‐picrylhydrazyl (DPPH^?) and alkyl/alkylperoxyl ABAP‐derived radicals at pH 7.4 was assessed by UV–visible spectroscopy. Reactivity of 1,4‐DHPs toward DPPH^? was measured by following the decay of the absorption corresponding to the radical λ_max at 525 nm, permitting the calculation of EC₅₀, t_EC50, and antiradical efficiency values. Pseudo–first‐order kinetic rate constants for the reactivity between the C4‐phenolic‐substituted 1,4‐DHP compounds and alkyl/alkylperoxyl ABAP‐derived radicals were followed by the decrease in λ_max at 356 nm corresponding to 1,4‐DHP moiety. C4‐phenolic‐substituted 1,4‐DHPs were more reactive toward alkyl free radicals than the other tested radicals. The 3,4,5‐trihydroxyphenyl‐1,4‐DHP was the most reactive derivative toward this radical with a kinetic rate constant value of 513.2 s^?1. Also, this derivative was the most effective toward the DPPH^? radical with the lowest EC₅₀ value (5.08 µM). Comparative studies revealed that synthesized 1,4‐DHPs were more reactive than commercial 1,4‐DHPs. The scavenging mechanism involves the contribution of both pharmacophores, that is, hydroxyphenyl and 1,4‐DHP rings, which was supported by the identification of the reaction products. © 2012 Wiley Periodicals, Inc. Int J Chem Kinet 44: 810–820, 2012     

SLIM: A Short‐Linked,Highly Redox‐Stable Trityl Label for High‐Sensitivity In‐Cell EPR Distance Measurements

The understanding of biomolecular function is coupled to knowledge about the structure and dynamics of these biomolecules, preferably acquired under native conditions. In this regard, pulsed dipolar EPR spectroscopy (PDS) in conjunction with site‐directed spin labeling (SDSL) is an important method in the toolbox of biophysical chemistry. However, the currently available spin labels have diverse deficiencies for in‐cell applications, for example, low radical stability or long bioconjugation linkers. In this work, a synthesis strategy is introduced for the derivatization of trityl radicals with a maleimide‐functionalized methylene group. The resulting trityl spin label, called SLIM, yields narrow distance distributions, enables highly sensitive distance measurements down to concentrations of 90 nm , and shows high stability against reduction. Using this label, the guanine‐nucleotide dissociation inhibitor (GDI) domain of Yersinia outer protein O (YopO) is shown to change its conformation within eukaryotic cells.     

Solvent‐Free Photooxidation of Alkanes by Dioxygen with 2,3‐Dichloro‐5,6‐dicyano‐p‐benzoquinone via Photoinduced Electron Transfer

Photooxidation of alkanes by dioxygen occurred under visible light irradiation of 2,3‐dichloro‐5,6‐dicyano‐p‐benzoquinone (DDQ) which acts as a super photooxidant. Solvent‐free hydroxylation of cyclohexane and alkanes is initiated by electron transfer from alkanes to the singlet and triplet excited states of DDQ to afford the corresponding radical cations and DDQ^??, as revealed by femtosecond laser‐induced transient absorption measurements. Alkane radical cations readily deprotonate to produce alkyl radicals, which react with dioxygen to afford alkylperoxyl radicals. Alkylperoxyl radicals abstract hydrogen atoms from alkanes to yield alkyl hydroperoxides, accompanied by regeneration of alkyl radicals to constitute the radical chain reactions, so called autoxidation. The radical chain is terminated in the bimolecular reactions of alkylperoxyl radicals to yield the corresponding alcohols and ketones. DDQ^??, produced by the photoinduced electron transfer from alkanes to the excited state of DDQ, disproportionates with protons to yield DDQH₂.     

Generation of 8‐oxo‐7,8‐dihydroguanine in G‐Quadruplexes Models of Human Telomere Sequences by One‐electron Oxidation

The mechanistic aspects of one‐electron oxidation of G‐quadruplexes in the basket (Na⁺ ions) and hybrid (K⁺ ions) conformations were investigated by transient absorption laser kinetic spectroscopy and HPLC detection of the 8‐oxo‐7,8‐dihydroguanine (8‐oxoG) oxidation product. The photo‐induced one‐electron abstraction from G‐quadruplexes was initiated by sulfate radical anions (SO₄˙^?) derived from the photolysis of persulfate ions by 308 nm excimer laser pulses. In neutral aqueous solutions (pH 7.0), the transient absorbance of neutral guanine radicals, G(‐H)˙, is observed following the complete decay of SO₄˙^? radicals (~10 μs after the actinic laser flash). In both basket and hybrid conformations, the G(‐H)˙ decay is biphasic with one component decaying with a lifetime of ~0.1 ms, and the other with a lifetime of 20–30 ms. The fast decay component (~0.1 ms) in G‐quadruplexes is correlated with the formation of 8‐oxoG lesions. We propose that in G‐quadruplexes, G(‐H)˙ radicals retain radical cation character by sharing the N1‐proton with the O⁶‐atom of G in the [G˙⁺: G] Hoogsteen base pair; this [G(‐H)˙: H⁺G G˙⁺: G] leads to the hydration of G˙⁺ radical cation within the millisecond time domain, and is followed by the formation of the 8‐oxoG lesions.     

On the Synthesis,Characterization and Reactivity of N‐Heteroaryl–Boryl Radicals,a New Radical Class Based on Five‐Membered Ring Ligands

The synthesis and physical characterization of a new class of N‐heterocycle–boryl radicals is presented, based on five membered ring ligands with a N(sp²) complexation site. These pyrazole–boranes and pyrazaboles exhibit a low bond dissociation energy (BDE; B?H) and accordingly excellent hydrogen transfer properties. Most importantly, a high modulation of the BDE(B?H) by the fine tuning of the N‐heterocyclic ligand was obtained in this series and could be correlated with the spin density on the boron atom of the corresponding radical. The reactivity of the latter for small molecule chemistry has been studied through the determination of several reaction rate constants corresponding to addition to alkenes and alkynes, addition to O₂, oxidation by iodonium salts and halogen abstraction from alkyl halides. Two selected applications of N‐heterocycle–boryl radicals are also proposed herein, for radical polymerization and for radical dehalogenation reactions.     

Chlorine substitution promotes phenyl radical loss from C8‐phenoxy‐2′‐deoxyguanosine adducts: implications for biomarker identification from chlorophenol exposure

Chlorophenols are persistent organic pollutants, which undergo peroxidase‐mediated oxidation to afford phenolic radical intermediates that react at the C8‐site of 2′‐deoxyguanosine (dG) to generate oxygen‐linked C8‐dG adducts. Such adducts are expected to contribute to chlorophenol toxicity and serve as effective dose biomarkers for chlorophenol exposure. Electrospray ionization mass spectrometry (ESI‐MS) was employed to study collision induced dissociation (CID) for a family of such phenolic O‐linked C8‐dG adducts. Fragmentation of the deprotonated nucleosides demonstrates that an unexpected homolytic cleavage of the ether linkage to release phenyl radicals and a nucleoside distonic ion with m/z 281 competes effectively with commonly observed breakage of the glycosidic bond to release the deprotonated nucleobase. Increased chlorination of the phenyl ring enhances phenyl radical loss. Density functional theory calculations demonstrate that Cl‐substitution decreases phenyl radical stability but promotes homolytic breakage of the C8–phenyl bond in the C8‐dG adduct. The calculations suggest that phenyl radical loss is driven by destabilizing steric (electrostatic repulsion) interactions between the ether oxygen atom and ortho‐chlorines on the phenyl ring. The distonic ion at m/z 281 represents a unique dissociation product for deprotonated O‐linked C8‐dG adducts and may prove useful for selective detection of relevant biomarkers for chlorophenol exposure by tandem mass spectrometry using selective reaction monitoring. Copyright © 2015 John Wiley & Sons, Ltd.     

A Phosphine‐Coordinated Boron‐Centered Gomberg‐Type Radical

The P‐coordinated boryl radical [Ph₂P(naphthyl)BMes]^. (Mes=mesityl) was prepared by (electro)chemical reduction of the corresponding borenium salt or bromoborane. Electron paramagnetic resonance (EPR) analysis in solution and DFT calculations indicate large spin density on boron (60–70 %) and strong P–B interactions (P→B σ donation and B→P negative hyperconjugation). The radical is persistent in solution and participates in a Gomberg‐type dimerization process. The associated quinoid‐type dimer has been characterized by single‐crystal X‐ray diffraction.     

Emulsion and miniemulsion polymerizations with an oil‐soluble initiator in the presence and absence of an aqueous‐phase radical scavenger

Butyl acrylate conventional emulsion (macroemulsion) and miniemulsion polymerizations were carried out with an oil‐soluble initiator (azobisisobutyronitrile) in the presence or absence of an aqueous‐phase radical scavenger. For macroemulsion polymerization, in the presence of an aqueous‐phase radical scavenger, no particle nucleation occurred, whereas in the absence of an aqueous‐phase radical scavenger, particle nucleation proceeded as expected. For miniemulsion polymerization, the rate of polymerization was much higher in the absence of an aqueous‐phase radical scavenger than in its presence. Furthermore, in the absence of an aqueous‐phase radical scavenger, the miniemulsion polymerization rate increased with reduced droplet size, whereas in the presence of an aqueous‐phase radical scavenger, the trend was reversed. It is concluded that (1) for macroemulsion polymerization, the contribution from free radicals originating in the aqueous‐phase is predominant in the micellar nucleation of particles; (2) free radicals originating in the particle phase contribute to the rate of polymerization and the contribution increases with an increase in the particle size; and (3) for polymer particles with diameters of up to approximately 100 nm, polymerization is initiated from free radicals originating in the aqueous phase. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 3200–3211, 2002     

Prompt and Slow Electron‐Detachment‐Dissociation/Electron‐Photodetachment‐Dissociation of a 21‐Mer Peptide

Electron detachment dissociation (EDD) and electron photodetachment dissociation (EPD) are relatively new dissociation methods that involve electron detachment followed by radical‐driven dissociation from multiply deprotonated species. EDD yields prompt dissociation whereas only electron detachment is obtained by EPD; subsequent vibrational activation of the charge‐reduced radical anion is required to obtain the product ions. Herein, the fragmentation patterns that were obtained by EDD and by vibrational activation of the charge‐reduced radical anions that were produced through EDD or EPD (activated‐EDD and activated‐EPD) were compared. The observed differences were related to the dissociation kinetics and/or the contribution of electron‐induced dissociation (EID). Time‐resolved double‐resonance experiments were performed to measure the dissociation rate constants of the EDD product ions. Differences in the formation kinetics were revealed between the classical EDD/EPD ′a^._i/′′x_j complementary ions and some ′a^._i/c_i/′′′z^._j product ions, which were produced with slower dissociation rate constants, owing to the presence of specific neighbouring side chains. A new fragmentation pathway is proposed for the formation of the slow‐kinetics ′a^._i ions.     

Radical‐Based C−C Bond‐Forming Processes Enabled by the Photoexcitation of 4‐Alkyl‐1,4‐dihydropyridines

We report herein that 4‐alkyl‐1,4‐dihydropyridines (alkyl‐DHPs) can directly reach an electronically excited state upon light absorption and trigger the generation of C(sp³)‐centered radicals without the need for an external photocatalyst. Selective excitation with a violet‐light‐emitting diode turns alkyl‐DHPs into strong reducing agents that can activate reagents through single‐electron transfer manifolds while undergoing homolytic cleavage to generate radicals. We used this photochemical dual‐reactivity profile to trigger radical‐based carbon–carbon bond‐forming processes, including nickel‐catalyzed cross‐coupling reactions.     

A Supramolecular Radical Dimer: High‐Efficiency NIR‐II Photothermal Conversion and Therapy

Photothermal therapy at the NIR‐II biowindow (1000–1350 nm) is drawing increasing interest because of its large penetration depth and maximum permissible exposure. Now, the supramolecular radical dimer, fabricated by N,N′‐dimethylated dipyridinium thiazolo[5,4‐d]thiazole radical cation (MPT^.+) and cucurbit[8]uril (CB[8]), achieves strong absorption at NIR‐II biowindow. The supramolecular radical dimer (2MPT^.+‐CB[8]) showed highly efficient photothermal conversion and improved stability, thus contributing to the strong inhibition on HegG2 cancer cell under 1064 nm irradiation even penetrating through chicken breast tissue. This work provides a novel approach to construct NIR‐II chromophore by tailor‐made assembly of organic radicals. It is anticipated that this study provides a new strategy to achieve NIR‐II photothermal therapy and holds promises in luminescence materials, optoelectronic materials, and also biosensing.     

Unimolecular Reaction Properties for the Long‐Chain Alkenyl Radicals

Although alkenyl radicals are important intermediates involved in both alkanes and alkenes combustion, previous kinetic studies on them are very limited, especially for the long‐chain alkenyl radicals. To deeply investigate unimolecular reaction activities of long‐chain alkenyl radicals, a series of octenyl (C₈H₁₅) radicals were chosen to study the reaction kinetics of three typical types of reactions (i.e., intramolecular radical addition, internal H‐migration, and bond dissociation) in this work. The CBS‐QB3 method was used to build potential energy surfaces for these reactions, and the transition state theory was applied to obtain the high‐pressure limit rate constants. Some general rules are observed from our systematic calculations in respect of structure–activity relationships.     

Hydrogen Transfer in SAM‐Mediated Enzymatic Radical Reactions

S‐Adenosylmethionine (SAM) plays an essential role in a variety of enzyme‐mediated radical reactions. One‐electron reduction of SAM is currently believed to generate the C5′‐desoxyadenosyl radical, which subsequently abstracts a hydrogen atom from the actual substrate in a catalytic or a non‐catalytic fashion. Using a combination of theoretical and experimental bond dissociation energy (BDE) data, the energetics of these radical processes have now been quantified. SAM‐derived radicals are found to react with their respective substrates in an exothermic fashion in enzymes using SAM in a stoichiometric (non‐catalytic) way. In contrast, the catalytic use of SAM appears to be linked to a sequence of moderately endothermic and exothermic reaction steps. The use of SAM in spore photoproduct lyase (SPL) appears to fit neither of these general categories and appears to constitute the first example of a SAM‐initiated radical reaction propagated independently of the cofactor.     

Implications of monomer and initiator structure on the dissociative electron‐transfer step of SET‐LRP

The heterolytic dissociation process associated with the activation of Single Electron‐Transfer Living Radical Polymerization is examined through the use of energy profile modeling. Monomer and initiator structure is correlated with the approximate activation barriers, energies of electrostatic ion‐radical pair formation, and stability of ion‐radical pair generated from the counteranion halide leaving group and the radical atom with partial positive charge density induced by its electron‐withdrawing substituent. Energy profiles permit access not just to one, but to all local minima, in the dissociation pathway and the identification of a global minimum. The location and energy of this global minimum allows for the placement of various initiators and dormant propagating macroradicals on the spectrum between stepwise and concerted dissociative electron‐transfer. The barrier for the activation step for alkyl‐halides derived from acrylates, vinyl halides, and styrenes, as well as from initiators bearing electron‐withdrawing groups is decreased in comparison to relatively more electron‐rich alkyl halides. This rate enhancement is explained through the sticky dissociative model wherein electron‐transfer is accelerated by the formation of strong ion‐radical pairs between radicals with partial positive charge density and their counteranion leaving group. Greater electron‐withdrawing capacity of the alkyl halide substituent increases the stability of the ion‐radical pair, reduces its equilibrium bond length, and accelerates electron‐transfer. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 5663–5697, 2008     

8‐Hydroxy‐1,3,6‐pyrene trisulfonic acid (pyranine) bleaching by 2,2′‐azobis(2‐amidinopropane) derived peroxyl radicals

8‐Hydroxy‐1,3,6‐pyrene trisulfonic acid, trisodium salt (pyranine), readily reacts with peroxyl radicals generated in the aerobic pyrolysis of 2,2′‐azobis(2‐amidinopropane) (AAPH). The process can be followed by monitoring the decrease in pyranine absorbance (460 nm) or fluorescence (excitation: 460 nm; emission: 510 nm). The reaction follows a nearly zero‐order kinetics in pyranine (0.25–30 μM range), suggesting a very efficient trapping of peroxyl radicals. In agreement with this, the process is order one in AAPH. The bleaching process is totally prevented by Trolox (μM range), and partially prevented by Trp (mM range). The protection afforded by Trp is very little dependent upon the pyranine concentration. This result indicates that the main protective pathway is not a competitive scavenging of the peroxyl radicals. The data suggest protection due to repair of the initially produced pyranyl radicals. These radicals are also very efficient in the destruction of C‐phycocyanin bilin groups. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 525–531, 2003     

Well‐defined polymers containing high density of pendant viologen groups

Atom transfer radical polymerization (ATRP) of a viologen‐containing methacrylate, 1‐propyl‐1′‐[2‐(methacryloyloxy)ethyl]‐4,4′‐bipyridinium dihexafluorophosphate, is reported. To achieve good polymerization control, it was essential to use the viologen‐based monomer with a hexafluorophosphate instead of halide counterion, and 2,2′‐bipyridine as the ligand for the Cu‐based ATRP catalyst. The solubility of produced cationic polymers could be tuned by anion metathesis: the polymers with hexafluorophosphate counterions were soluble in organic solvents (e.g., acetone, DMF), and those with chloride counterions were water‐soluble. In aqueous solutions, the polymers (chloride salts) formed large aggregates, the sizes of which ranged from about 200 to about 400 nm (based on dynamic light scattering measurements) depending on the molecular weight. Upon addition of electrolytes (e.g., NaCl), the aggregates underwent dissociation. The apparent diffusion coefficients of the aggregates existing in aqueous solutions and the products of their electrolyte‐induced dissociation were measured by diffusion‐ordered NMR spectroscopy. The association–dissociation processes were also studied by fluorescence spectroscopy: the aqueous polymer solutions, which were originally fluorescent (λ _em = 402 nm at λ _ex = 350 nm), lost their fluorescence in the presence of NaCl. The addition of small amounts of the viologen‐containing polyelectrolytes to solutions of inorganic salts (NaCl) altered the crystal morphology of the salts due to interaction of the multiple charged pendant groups with small ions. In the presence of reducing agents, the pendant viologen groups were converted to viologen radical‐cations, which are prone to dimerize reversibly in aqueous solutions. Indeed, marked dimerization of viologen radical cations (with absorbance maxima at 520 and 870 nm) was observed in relatively dilute aqueous solutions (4 mg mL^?1) upon addition of reducing agents (hydrazine). © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 55 , 1173–1182     

Divergent Synthesis of CF3‐Substituted Allenyl Nitriles by Ligand‐Controlled Radical 1,2‐ and 1,4‐Addition to 1,3‐Enynes

A ligand‐controlled system that enables regioselective trifluoromethylcyanation of 1,3‐enynes has been identified, which provides access to a variety of CF₃‐containing tri‐ and tetrasubstituted allenyl nitriles. We disclose that the involved propargylic radicals can be selectively trapped by (Box)Cu^II cyanide, while the tautomerized allenyl radicals are trapped by (phen)Cu^II cyanide (Box= bisoxazoline, phen=phenanthroline). In addition, the reaction features broad substrate scope and excellent functional group compatibility. Moreover, this protocol represents a novel regioselectivity‐tunable functionalization of 1,3‐enynes via radicals, which we believe will have great implications for the development of catalytic systems for selectivity control in radical and organometallic chemistry.     

Fluorescent oligo(N‐phenylmaleimide)s via aerobic radical telomerization initiated by benzylic hydrocarbons: Catalytic effect of CoII/N‐hydroxyphthalimide pair

Radical oligomerization of N‐phenylmaleimide (NPMI) was performed in benzylic hydrocarbons as the solvent. The thermally induced oligomerization occurred only above 130 °C, with the initiation attributed to autoxidation of benzylic hydrocarbons as well as formation and dissociation of charge‐transfer complexes between benzylic hydrocarbons and maleimides. The end‐group analysis on oligo(N‐ethylmaleimide) prepared under similar conditions confirmed that the chain transfer to benzylic hydrocarbons was the primary fashion in forming oligomeric chains, and radical telomerization underlaid the oligomerization with benzylic hydrocarbons as both the solvent, the initiator and the telogen. Co^II/N‐hydroxyphthalimide (NHPI) pairs could catalyze the telomerization at 110 °C. In such a catalytic process, Co^II‐based oxidative complexes oxidized benzylic hydrocarbons and NHPI into benzylic radicals and phthalimide N‐oxyl (PINO), and benzylic hydrocarbons underwent hydrogen atom transfer (HAT) to PINO. Oligo(NPMI)s were formed via HAT with benzylic hydrocarbons and NHPI. These oligo(NPMI)s exhibited fluorescent properties with excitation at 270–350 nm and 400–550 nm and emission at 530–750 nm. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 3846–3857