Folding and Anion‐Binding Properties of Fluorescent Oligoindole Foldamers

A series of oligoindole foldamers 1 a – d that are highly fluorescent were prepared by using a biindole derivative as the repeating unit, and their folding and anion‐binding properties were revealed by ¹H NMR and fluorescence spectroscopy. The oligoindoles exist in an extended conformation, but adopt a compact helical structure in the presence of an anion. The anion is entrapped inside the tubular cavity of the helical strand, comprising four aryl units per turn, by multiple hydrogen bonds with the indole NHs. These structural features were confirmed by ¹H NMR and fluorescence spectroscopy. When folded by anion binding, 1 b – d show characteristic downfield shifts of the NH signals and upfield shifts of the aromatic CH signals by Δδ=0.1–1.0 ppm. The average chemical shift for all the aromatic signals of 1 a – d is more upfield shifted as the chain lengthens, as anticipated from the degree of overlapped aromatic surfaces in the helical strand. Moreover, 1 a – d are strongly fluorescent in the absence of an anion. Upon binding an anion such as a chloride, the shorter oligoindoles 1 a and b lead to negligible change in the emission spectra, whereas the longer ones 1 c and d result in dramatic changes, that is, large hypochromic and bathochromic shifts (Δλ=65 and 70 nm) of the emission band, confirming the helical folding. The association constants (K_a) between oligoindoles and tetrabutylammonium chloride strongly depend on the chain length; <1 M ^?1 for 1 a , 630 M ^?1 for 1 b , 1.1×10⁵ M ^?1 for 1 c , and 2.9×10⁵ M ^?1 for 1 d in 20 % (v/v) MeOH/CH₂Cl₂ at 24±1 °C. In addition, the association constants of 1 c and 1 d with other anions such as fluoride, bromide, iodide, azide, cyanide, acetate, and nitrate are determined to be in the order of 10³–10⁶ M ^?1 under the same conditions.     

Hybridization of Long Pyridine‐Dicarboxamide Oligomers into Multi‐Turn Double Helices: Slow Strand Association and Dissociation,Solvent Dependence,and Solid State Structures

Oligoamides of 2,6‐diaminopyridine and 2,6‐pyridinedicarboxylic acid comprised of 5, 7, 9, 11, or 13 units and bearing 4‐isobutoxychains on all pyridine rings and tert‐butyl‐carbamate terminal groups have been synthesized stepwise, along with an 11 mer having benzyl‐carbamate terminal groups. The crystal structure of all five Boc‐terminated compounds has been obtained and shows a highly regular and conserved double helical hybridization motif of up to 3 complete turns for the 13 mer. Four pyridine units span one helical turn and define a helix pitch of ca 7 Å. Solution studies in CDCl₃ demonstrated that the Boc‐terminated oligomers strongly hybridize in this solvent, and that K_dim values increase with oligomer length. The K_dim values are 31000 and 7×10⁵ L mol^?1 for the 7 mer and the 9 mer, respectively, and are too high to be measured by NMR for the 11 mer and the 13 mer. Hybridization and dissociation kinetics at 2 mM proceed at decreasing rates upon increasing oligomer length. The rate was faster than minutes for the 7 mer, of the order of hours for the 9 mer, and days for the 11 mer and 13 mer. The same trend was observed in [D₅]pyridine but with considerably lower K_dim values and faster kinetics. The benzylcarbamate 11 mer was also found to hybridize into a double helix but with reduced K_dim values and faster kinetics compared to its Boc‐terminated analogue. Combined with previous studies, the results presented here frame a global understanding of the hybridization of these pyridinecarboxamide oligomers and provide useful guidelines for the design of other artificial double helices.     

EPR Studies of the Binding Properties,Guest Dynamics,and Inner‐Space Dimensions of a Water‐Soluble Resorcinarene Capsule

Nitroxide free radicals have been used to study the inner space of one of Rebek’s water‐soluble capsules. EPR and ¹H NMR spectroscopy, ESI‐MS, and DFT calculations showed a preference for the formation of 1:2 complexes. EPR titrations allowed us to determine binding constants (K_a) in the order of 10⁷ M ^?2. EPR spectral‐shape analysis provided information on the guest rotational dynamics within the capsule. The interplay between optimum hydrogen bonding upon capsule formation and steric strain for guest accommodation highlights some degree of flexibility for guest inclusion, particularly at the center of the capsule where the hydrogen bond seam can be barely distorted or slightly disturbed.     

A Remarkable Solvent Effect on the Nuclearity of Neutral Titanium(IV)‐Based Helicate Assemblies

The spontaneous self‐assembly of a neutral circular trinuclear Ti^IV‐based helicate is described through the reaction of titanium(IV) isopropoxide with a rationally designed tetraphenolic ligand. The trimeric ring helicate was obtained after diffusion of n‐pentane into a solution with dichloromethane. The circular helicate has been characterized by using single‐crystal X‐ray diffraction study, ¹³C CP‐MAS NMR and ¹H NMR DOSY solution spectroscopic, and positive electrospray ionization mass‐spectrometric analysis. These analytical data were compared with those obtained from a previously reported double‐stranded helicate that crystallizes in toluene. The trimeric ring was unstable in a pure solution with dichloromethane and transformed into the double‐stranded helicate. Thermodynamic analysis by means of the PACHA software revealed that formation of the double‐stranded helicates was characterized by ΔH(toluene)=?30 kJ mol^?1 and ΔS(toluene)=+357 J K^?1 mol^?1, whereas these values were ΔH(CH₂Cl₂)=?75 kJ mol^?1 and ΔS(CH₂Cl₂)=?37 J K^?1 mol^?1 for the ring helicate. The transformation of the ring helicate into the double‐stranded helicate was a strongly endothermic process characterized by ΔH(CH₂Cl₂)=+127 kJ mol^?1 and ΔH(n‐pentane)=+644 kJ mol^?1 associated with a large positive entropy change ΔS=+1115 J K^?1?mol^?1. Consequently, the instability of the ring helicate in pure dichloromethane was attributed to the rather high dielectric constant and dipole moment of dichloromethane relative to n‐pentane. Suggestions for increasing the stability of the ring helicate are given.     

Electron‐Transporting Bis(heterotetracenes) with Tunable Helical Packing

A novel kind of electron‐deficient bis(heterotetracenes) namely perylenotetrathiophenediimides (PTTIs) involving double S‐hetero[5]helicene diimides, is developed by a fourfold thienannulation route via ortho‐functionalization of perylene diimides (PDIs). PTTIs exhibit significantly red‐shifted absorption capacity with lowest‐energy transition maxima beyond 700 nm and narrowed HOMO–LUMO energy gaps. Through delicately tuning the side‐chain substitution, the distorted propeller‐like framework could self‐assemble into unprecedented 1D helical π‐stacking structures with short π–π contacts and rich nonbonding interactions from alternating arrangements of P / M enantiomeric couples or tetrads. Excellent electron transporting efficiency in racemate PTTI crystals with 0.40 cm² V^?1 s^?1 for 5 a and 0.90 cm² V^?1 s^?1 for 5 b , was witnessed in single‐crystalline transistors, signifying the prospects of the chiral π‐helix in optoelectronic applications.     

Homo‐double helix formation of an optically active conjugated polymer bearing carboxy groups and amplification of the helicity upon complexation with achiral and chiral amines

An optically active, m‐terphenyl‐based π‐conjugated polymer bearing carboxy groups was synthesized by the copolymerization of the diethynyl monomer bearing a carboxy group with (S,S)‐2,5‐bis(2‐methylbutoxy)‐1,4‐dibromobenzene using Sonogashira reaction. The copolymer showed a weak circular dichroism (CD) in the main‐chain chromophore region due to a homo‐double helix formation with an excess helical handedness biased by the chiral alkoxy substituents through self‐association. However, upon complexation with achiral amines, such as piperidine, the CD intensity of the polymer significantly increased resulting in the formation of a greater excess one‐handed homo‐double helix via hydrogen‐bonded inclusion complexation with the achiral amines between each strand, leading to the amplification of the helicity. A preferred‐handed homo‐double helix was also induced in the polymer in the presence of nonracemic amines. The effect of the achiral and chiral amines on the homo‐double helix formation was investigated by comparing the CD spectra of the polymer to those of its model dimer. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 990–999     

Construction and DNA Condensation of Cyclodextrin‐Coated Gold Nanoparticles with Anthryl Grafts

The condensation of DNA in a controlled manner is one of the key steps in gene delivery and gene therapy. For this purpose, a water‐soluble supramolecular nanostructure is constructed by coating 14 β‐cyclodextrins onto the surface of a gold nanoparticle, followed by the noncovalent association of different amounts of anthryl‐modified adamantanes with coated β‐cyclodextrins. The strong binding of β‐cyclodextrins with anthryl adamantanes (K_S=8.61×10⁴ M ^?1) efficiently stabilizes the supramolecular nanostructure. Spectrophotometric fluorescence spectra and microscopic studies demonstrated that, with many anthryl grafts that can intercalate in the outer space of the DNA double helix, this supramolecular nanostructure showed good condensation abilities to calf thymus DNA. Significantly, the condensation efficiency of supramolecular nanostructure towards DNA could be conveniently controlled by adjusting the ratio between gold nanoparticles and anthryl adamantane grafts, leading to the formation of DNA condensates of a size that are suitable for the endocytosis of hepatoma cells, which will make it potentially applicable in many fields of medicinal science and biotechnology.     

Encapsulation‐Induced Remarkable Stability of a Hydrogen‐Bonded Heterocapsule

Remarkably enhanced stability of the self‐assembled hydrogen‐bonded heterocapsule 1?2 by the encapsulation of 1,4‐bis(1‐propynyl)benzene 3 a was found with K_a=1.14×10⁹ M ^?1 in CDCl₃ and K_a2=1.59×10⁸ M ^?2 in CD₃OD/CDCl₃ (10 % v/v) at 298 K. The formation of 3 a @( 1?2 ) was enthalpically driven (ΔH°<0 and ΔS°<0) and there was a unique inflection point in the correlation between ΔH° versus ΔS° as a function of polar solvent content. The ab initio calculations revealed that favorable guest–capsule dispersion and electrostatic interactions between the acetylenic parts (triple bonds) of 3 a and the aromatic inner space of 1?2 , as well as less structural deformation of 1?2 upon encapsulation of 3 a , play important roles in the remarkable stability of 3 a @( 1?2 ).     

meso Myths: What Drives Assembly of Helical versus meso-[M2L3] Clusters?

Both a triple helix as well as a meso complex are formed by the Ga^III and Al^III complexes with a bis-bidentate bis-hydroxypyridinone ligand H₂L. The two forms are in equilibrium in solution, though formation of the helical structure in the presence of water, which as guest molecule finds sufficient space in the cavity of the helix, is favored (the structure of the helical H₂O⊂[Al₂L₃] complex is shown).     

多吡啶锌配合物键合与切割DNA研究

The complex of Zn[(phen)(dione)Cl]ClO_4·H_2O(where phen is 1,10-phenanthroline and dione is 1,10-phenan-throline-5,6-dione)has been synthesized and characterized.The interaction of the complex with DNA was investi-gated using UV absorption,fluorescence spectroscopy and electrophoresis measurements.The results show that thecomplex mainly binds to the double helix of DNA with intercalation mode and the binding constant K is 2.4×10~4mol~(-1)·L.Moreover,the complex can efficiently cleave plasmid DNA at physiological pH and temperature.Thecleavage occurs via a hydrolysis mechanism,which is showed by adding radical scavengers,rigorously anaerobicexperiments,analysis for malondialdehyde-like products,and the hydrolysis experiment of BDNPP with a rate con-stant k_(obs)of 5.3×10~(-6)s~(-1).     

Modulating the Binding of Polycyclic Aromatic Hydrocarbons Inside a Hexacationic Cage by Anion–π Interactions

We report the template‐directed synthesis of BlueCage⁶⁺, a macrobicyclic cyclophane composed of six pyridinium rings fused with two central triazines and bridged by three paraxylylene units. These moieties endow the cage with a remarkably electron‐poor cavity, which makes it a powerful receptor for polycyclic aromatic hydrocarbons (PAHs). Upon forming a 1:1 complex with pyrene in acetonitrile, however, BlueCage?6 PF₆ exhibits a lower association constant K_a than its progenitor ExCage?6 PF₆. A close inspection reveals that the six PF₆^? counterions of BlueCage⁶⁺ occupy the cavity in a fleeting manner as a consequence of anion–π interactions and, as a result, compete with the PAH guests. This conclusion is supported by a one order of magnitude increase in the K_a value for pyrene in BlueCage⁶⁺ when the PF₆^? counterions are replaced by much bulkier anions. The presence of anion–π interactions is supported by X‐ray crystallography, and confirms the presence of a PF₆^? counterion inside its cavity.     

Counterion Dynamics in an Interpenetrated Coordination Cage Capable of Dissolving AgCl

In solution, the eight BF₄^? counterions of a positively charged D₄‐symmetric interpenetrated [Pd₄ligand₈]⁸⁺ double cage ( 1 ) are localized in distinct positions. At low temperatures, one BF₄^? ion is encapsulated inside the central pocket of the supramolecular structure, two BF₄^? ions are bound inside the equivalent outer pockets, and the remaining five BF₄^? ions are located outside the cage structure (expressed by the formula [3 BF₄@ 1 ][BF₄]₅). On warming, the two BF₄^? ions in the outer pockets are found to exchange with the exterior ions in solution whereas the central BF₄^? ion stays locked inside the central cavity (here written as [BF₄@ 1 ][BF₄]₇). The exchange kinetics were determined by exchange spectroscopy (EXSY) NMR experiments and line‐shape fitting in different solvents. The tremendously high affinity of this double cage for the binding of two chloride ions inside the outer pockets allows for complete exchange of two BF₄^? ions by the addition of solid AgCl to give [2 Cl+BF₄@ 1 ][BF₄]₅. The uptake of the two chloride ions is allosteric and is thus accompanied by a structural rearrangement (compression along the Pd₄ axis) of the double cage structure. An analysis by using 900 MHz NOESY NMR spectroscopy shows that this compression of about 3.3 % is associated with a helical twist of 8°, which together resemble a screw motion. As a consequence of squeezing each of the outer two pockets by 53 %, the volume of the central pocket is increased by 43 %, which results in an increase of 36 % in the ¹⁹F spin‐lattice relaxation time (T₁) of the central BF₄^? ion. The packing coefficients (PC) for the ions in the outer pockets (103 % for BF₄^? and 96 % for Cl^?) were calculated.     

MZn2HPO4PO4 (M=Na+, K+)的合成、表征和标准摩尔生成焓

采用低温固相法和水热法制备MZn2HPO4PO4 (M=Na+, K+) 并用XRD, FT-IR, TG and SEM对其进行表征,用等温量热计测定热化学性质。按照Hess’s定律,设计一新的热化学循环。结果表明,所合成的物质是等结构三斜晶系的目标产物,具有片层结构,分解温度分别为： 415 ℃和430 ℃。从测定的溶解焓和其他的标准热化学数据,计算出MZn2HPO4PO4 (M=Na+, K+) 的标准摩尔生成焓分别为：ΔfHm [NaZn2HPO4PO4, s]=-3042.38±0.31 kJ·mol-1; ΔfHm [KZn2HPO4PO4,s]=-3093.46 ±0.27 kJ·mol-1。     

Tunable Keplerate Type‐Cluster “Mo132” Cavity with Dicarboxylate Anions

The internal functionalization of the Keplerate‐type capsule Mo₁₃₂ has been carried out by ligand exchange leading to the formation of glutarate and succinate containing species isolated as ammonium or dimethylammonium salts. Solution NMR analysis is consistent with asymmetric inner dicarboxylate ions containing one carboxylato group grafted onto the inner side of the spheroidal inorganic shell while the second hangs toward the center of the cavity. Such a disposition has been confirmed by the single‐crystal X‐ray diffraction analysis of the glutarate containing {Mo₁₃₂} species. A detailed NMR solution study of the ligand‐exchange process allowed determining the binding constant K_L of acetate (AcO^?), succinate (HSucc^?) or glutarate (HGlu^?) ligands at the 30 inner coordinating sites, which vary such as K<K<K‐supported by the associated thermodynamic parameters Δ_rS* and Δ_rH*. Such a variation is mainly explained by a positive entropic gain attenuated by unfavorable steric effect. Furthermore, these results are completed by ¹H DOSY and ¹H EXSY NMR experiments which are in agreement with bulky guests firmly trapped within the cavity. At last, variable temperature ¹H NMR study below 290 K revealed a striking line broadening occurring abruptly within a 5 K range. Such an effect appears closely related to the presence of the ammonium cations suspected to be present within the cavity and then has been interpreted as an inner‐phase transition leading to a frozen state.     

Cucurbit[7]uril: A High‐Affinity Host for Encapsulation of Amino Saccharides and Supramolecular Stabilization of Their α‐Anomers in Water

Cucurbit[7]uril (CB[7]), an uncharged and water‐soluble macrocyclic host, binds protonated amino saccharides (D ‐glucosamine, D ‐galactosamine, D ‐mannosamine and 6‐amino‐6‐deoxy‐D ‐glucose) with excellent affinity (K_a=10³ to 10⁴ M ^?1). The host–guest complexation was confirmed by NMR spectroscopy, isothermal titration calorimetry (ITC), and MALDI‐TOF mass spectral analyses. NMR analyses revealed that the amino saccharides, except D ‐mannosamine, are bound as α‐anomers within the CB[7] cavity. ITC analyses reveal that CB[7] has excellent affinity for binding amino saccharides in water. The maximum affinity was observed for D ‐galactosamine hydrochloride (K_a=1.6×10⁴ M ^?1). Such a strong affinity for any saccharide in water using a synthetic receptor is unprecedented, as is the supramolecular stabilization of an α‐anomer by the host.     

Unexpected Self‐Sorting Self‐Assembly Formation of a [4:4] Sulfate:Ligand Cage from a Preorganized Tripodal Urea Ligand

The design and synthesis of tripodal ligands 1 – 3 based upon the N‐methyl‐1,3,5‐benzenetricarboxamide platform appended with three aryl urea arms is reported. This ligand platform gives rise to highly preorganized structures and is ideally suited for binding SO₄^2? and H₂PO₄^? ions through multiple hydrogen‐bonding interactions. The solid‐state crystal structures of 1 – 3 with SO₄^2? show the encapsulation of a single anion within a cage structure, whereas the crystal structure of 1 with H₂PO₄^? showed that two anions are encapsulated. We further demonstrate that ligand 4 , based on the same platform but consisting of two bis‐urea moieties and a single ammonium moiety, also recognizes SO₄^2? to form a self‐assembled capsule with [4:4] SO₄^2?: 4 stoichiometry in which the anions are clustered within a cavity formed by the four ligands. This is the first example of a self‐sorting self‐assembled capsule where four tetrahedrally arranged SO₄^2? ions are embedded within a hydrophobic cavity.     

Crystal structure,thermal properties and detonation characterization of bis(5‐amino‐1,2,4‐triazol‐4‐ium‐3‐yl)methane dichloride

Bis(5‐amino‐1,2,4‐triazol‐4‐ium‐3‐yl)methane dichloride (BATZM·Cl₂ or C₅H₁₀N₈²⁺·2Cl^?) was synthesized and crystallized, and the crystal structure was characterized by single‐crystal X‐ray diffraction; it belongs to the space group C2/c (monoclinic) with Z = 4. The structure of BATZM·Cl₂ can be described as a V‐shaped molecule with reasonable chemical geometry and no disorder, and its one‐dimensional structure can be described as a rhombic helix. The specific molar heat capacity (C_p,m) of BATZM·Cl₂ was determined using the continuous C_p mode of a microcalorimeter and theoretical calculations, and the C_p,m value is 276.18 J K^?1 mol^?1 at 298.15 K. The relative deviations between the theoretical and experimental values of C_p,m, H_T – H_298.15K and S_T – S_298.15K of BATZM·Cl₂ are almost equivalent at each temperature. The detonation velocity (D) and detonation pressure (P) of BATZM·Cl₂ were estimated using the nitrogen equivalent equation according to the experimental density; BATZM·Cl₂ has a higher detonation velocity (7143.60 ± 3.66 m s^?1) and detonation pressure (21.49 ± 0.03 GPa) than TNT. The above results for BATZM·Cl₂ are compared with those of bis(5‐amino‐1,2,4‐triazol‐3‐yl)methane (BATZM) and the effect of salt formation on them is discussed.     

Anion Recognition by Aliphatic Helical Oligoureas

Anion binding properties of neutral helical foldamers consisting of urea type units in their backbone have been investigated. ¹H NMR titration studies in various organic solvents including DMSO suggest that the interaction between aliphatic oligoureas and anions (CH₃COO^?, H₂PO₄^?, Cl^?) is site‐specific, as it largely involves the urea NHs located at the terminal end of the helix (positive pole of the helix), which do not participate to the helical intramolecular hydrogen‐bonding network. This mode of binding parallels that found in proteins in which anion‐binding sites are frequently found at the N‐terminus of an α‐helix. ¹H NMR studies suggest that the helix of oligoureas remains largely folded upon anion binding, even in the presence of a large excess of the anion. This study points to potentially useful applications of oligourea helices for the selective recognition of small guest molecules.     

Conductive Nanoscopic Fibrous Assemblies Containing Helical Tetrathiafulvalene Stacks

Tetrathiafulvalenes (TTF) S‐TTF and R‐TTF having four chiral amide end groups self‐organize into helical nanofibers in the presence of 2,3,5,6‐tetrafluoro‐7,7′,8,8′‐tetracyano‐p‐quinodimethane (F₄TCNQ). The intermolecular hydrogen bonding among chiral amide end groups and the formation of charge‐transfer complexes results in a long one‐dimensional supramolecular stacking, and the chirality of the end groups affects the molecular orientation of TTF cores within the stacks. Electronic conductivity of a single helical nanoscopic fiber made of S‐TTF and F₄TCNQ is determined to be (7.0±3.0)×10^?4 S cm^?1 by point‐contact current‐imaging (PCI) AFM measurement. Nonwoven fabric composed of helical nanofibers shows a semiconducting temperature dependence with an activation energy of 0.18 eV.     

A new heteroleptic oxalate‐based compound: poly[[2‐(aminomethyl)pyridine]di‐μ6‐oxalato‐chromium(III)potassium(I)]

The title compound, [KCr(C₂O₂)₂(C₆H₈N₂)]_n, was obtained from aqueous solution and analyzed with single‐crystal X‐ray diffraction at 100 K. It crystallizes in the monoclinic space group C2/c and displays a three‐dimensional polymeric architecture built up by bimetallic oxalate‐bridged Cr^III–K helical chains linked through centrosymmetric K₂O₂ units to yield a sheet‐like alternating P/M arrangement which looks like that of the previously described two‐dimensional [NaCr(ox)₂(pyim)(H₂O)]·2H₂O [pyim is 2‐(pyridin‐2‐yl)imidazole; Lei et al. (2006). Inorg. Chem. Commun. 9 , 486–488]. The Cr^III ions in each helix have the same chirality. The infinite neutral sheets are eclipsed with respect to each other and are held together by a hydrogen‐bonding network involving 2‐(aminomethyl)pyridine H atoms and oxalate O atoms. Each sheet gives rise to channels of Cr₄K₄ octanuclear rings and each resultant hole is occupied by a pair of 2‐(aminomethyl)pyridine ligands with partial overlap. The shortest Cr...Cr distance [5.593 (4) Å] is shorter than usually observed in the K–M^III–oxalate family.