Combined Effects of Temperature,Pressure, and Co‐Solvents on the Polymerization Kinetics of Actin

In vivo studies have shown that the cytoskeleton of cells is very sensitive to changes in temperature and pressure. In particular, actin filaments get depolymerized when pressure is increased up to several hundred bars, conditions that are easily encountered in the deep sea. We quantitatively evaluate the effects of temperature, pressure, and osmolytes on the kinetics of the polymerization reaction of actin by high‐pressure stopped‐flow experiments in combination with fluorescence detection and an integrative stochastic simulation of the polymerization process. We show that the compatible osmolyte trimethylamine‐N‐oxide is not only able to compensate for the strongly retarding effect of chaotropic agents, such as urea, on actin polymerization, it is also able to largely offset the deteriorating effect of pressure on actin polymerization, thereby allowing biological cells to better cope with extreme environmental conditions.     

Isomeric effects on the self‐assembly of a plausible prebiotic nucleoside analogue: A theoretical study

The self‐assembly properties of N(9)‐(2,3‐dihydroxypropyl adenine) (DHPA), a plausible prebiotic nucleoside analogue of adenosine, were investigated using density functional theory. Two different isomers were considered, and it is found that while both isomers can form a variety of structures, including chains, one of them is also able to form cages and helixes. When these results were put in the context of substrate supported molecular self‐assembly, it is concluded that gas‐phase self‐assembly studies that consider isomer identity and composition not only can aid interpreting the experimental results, but also reveal structures that might be overlooked otherwise. In particular, this study suggest that a double‐helical structure made of DHPA molecules which could have implications in prebiotic chemistry and nanotechnology, is stable even at room temperature. For example electrical properties (energy gap of 4.52eV) and a giant permanent electrical dipole moment (49.22 Debye) were found in our larger double‐helical structure (3.7 nm) formed by 14 DHPA molecules. The former properties could be convenient for construction of organic dielectric‐based devices.     

Exploring the Free Energy and Conformational Landscape of tRNA at High Temperature and Pressure

A combined temperature‐ and pressure‐dependent study was employed to reveal the conformational and free‐energy landscape of phenylalanine transfer RNA (tRNA^Phe), a known model for RNA function, to elucidate the features that are essential in determining its stability. These studies also help explore its structural properties under extreme environmental conditions, such as low/high temperatures and high pressures. To this end, fluorescence and FTIR spectroscopies, calorimetric and small‐angle scattering measurements were carried out at different ion concentrations over a wide range of temperatures and pressures up to several hundred MPa. Compared with the pronounced temperature effect, the pressure‐dependent structural changes of tRNA^Phe are small. A maximum of only 15 % unpaired bases is observed upon pressurization up to 1 GPa. RNA unfolding differs not only from protein unfolding, but also from DNA melting. Its pressure stability seems to be similar to that of noncanonical DNA structures.     

Effect of high hydrostatic pressure on prebiotic peptide synthesis

Here we reported the high hydrostatic pressure, as a key factor of deep-sea environment conditions, promoted the peptide formation and should be considered as one of the significant factors in studying the origin of life.     

Putative One‐Pot Prebiotic Polypeptides with Ribonucleolytic Activity

KIA7, a peptide with a highly restricted set of amino acids (Lys, Ile, Ala, Gly and Tyr), adopts a specifically folded structure. Some amino acids, including Lys, Ile, Ala, Gly and His, form under the same putative prebiotic conditions, whereas different conditions are needed for producing Tyr, Phe and Trp. Herein, we report the 3D structure and conformational stability of the peptide KIA7H, which is composed of only Lys, Ile, Ala, Gly and His. When the imidazole group is neutral, this 20‐mer peptide adopts a four‐helix bundle with a specifically packed hydrophobic core. Therefore, one‐pot prebiotic proteins with well‐defined structures might have arisen early in chemical evolution. The Trp variant, KIA7W, was also studied. It adopts a 3D structure similar to that of KIA7H and its previously studied Tyr and Phe variants, but is remarkably more stable. When tested for ribonucleolytic activity, KIA7H, KIA7W and even short, unstructured peptides rich in His and Lys, in combination with Mg⁺⁺, Mn⁺⁺ or Ni⁺⁺ (but not Cu⁺⁺, Zn⁺⁺ or EDTA) specifically cleave the single‐stranded region in an RNA stem–loop. This suggests that prebiotic peptide–divalent cation complexes with ribonucleolytic activity might have co‐inhabited the RNA world.     

Reverse Spin‐Crossover and High‐Pressure Kinetics of the Heme Iron Center Relevant for the Operation of Heme Proteins under Deep‐Sea Conditions

By design of a heme model complex with a binding pocket of appropriate size and flexibility, and by elucidating its kinetics and thermodynamics under elevated pressures, some of the pressure effects are demonstrated relevant for operation of heme‐proteins under deep‐sea conditions. Opposite from classical paradigms of the spin‐crossover and reaction kinetics, a pressure increase can cause deceleration of the small‐molecule binding to the vacant coordination site of the heme‐center in a confined space and stabilize a high‐spin state of its Fe center. This reverse high‐pressure behavior can be achieved only if the volume changes related to the conformational transformation of the cavity can offset the volume changes caused by the substrate binding. It is speculated that based on these criteria nature could make a selection of structures of heme pockets that assist in reducing metabolic activity and enzymatic side reactions under extreme pressure conditions.     

Temperature‐sensitive chitosan membranes as a substrate for cell adhesion and cell sheet detachment

A series of temperature‐sensitive poly(CSA‐co‐NIPAAm) membranes that were suitable for cell culture and confluent cell sheets detachment were prepared. The membranes with thermo‐responsive surface properties were synthesized by the copolymerization of acrylic acid‐derivatized chitosan (CSA) and N‐isopropylacrylamide (NIPAAm) in aqueous solution. Characterization of the membranes were carried out by means of the Fourier transform infrared (FTIR), X‐ray photoelectron spectroscopy (XPS), scanning electron microscope (SEM), and water contact‐angle (WCA) measurements. The adhesion and detachment of mouse fibroblast (L929) cells on these membranes have been investigated. The study showed that poly(CSA‐co‐NIPAAm) membranes could not only enhance fibroblasts attachment but also harvest confluent cell sheets by simply lowering the temperature. Furthermore, the detached cells retained high viability and could proliferate again after transferred to a new culture surface. Copyright © 2011 John Wiley & Sons, Ltd.     

Investigation of structure‐performance properties of a special type of polysulfone blended membranes

Membranes require superior mechanical strength due to applied harsh conditions. The mechanical properties of membranes decrease with increasing hydrophilicity of its elements. In this study, mechanical properties were investigated for two special blended membranes which were made by blending polysulfone with (polysulfone‐g‐poly (n‐butylacrylate) and polysulfone‐g‐poly (tert‐butylacrylate) as components. All of the prepared membranes were characterized by differential scanning calorimeter, thermal gravimetric analysis, field emission scanning electron microscope, and atomic electron microscope and were investigated in terms of pure water flux, water contact angle, molecular weight cut off, and morphology. It was found that water contact angle decreased from 73.6° which belongs to neat membrane decreased to 46° for blended membranes containing higher amounts of copolymers; however, the pure water flux increased with increasing copolymer content considerably compared with the neat membrane. Also, molecular weight cut off increased aggressively. Furthermore, mechanical properties including tensile strength, Young modulus, and elongation at break were measured and compared with the neat polysulfone membrane. Results showed that the tensile strength and modulus decreased with an increase in the copolymers content, despite the increase in the elongation at break. The effect of applied pressure on the membrane structure and also bursting strength were studied, and it has been proved that not only the structure of the membranes but also their performance is strongly affected by the composition of the membranes.     

Nucleic Acid Catalysis under Potential Prebiotic Conditions

Catalysis by nucleic acids is indispensable for extant cellular life, and it is widely accepted that nucleic acid enzymes were crucial for the emergence of primitive life 3.5‐4 billion years ago. However, geochemical conditions on early Earth must have differed greatly from the constant internal milieus of today's cells. In order to explore plausible scenarios for early molecular evolution, it is therefore essential to understand how different physicochemical parameters, such as temperature, pH, and ionic composition, influence nucleic acid catalysis and to explore to what extent nucleic acid enzymes can adapt to non‐physiological conditions. In this article, we give an overview of the research on catalysis of nucleic acids, in particular catalytic RNAs (ribozymes) and DNAs (deoxyribozymes), under extreme and/or unusual conditions that may relate to prebiotic environments.     

Facile Synthesis of Cellulose Acetate Ultrafiltration Membrane with Stimuli‐Responsiveness to pH and Temperature Using the Additive of F127‐b‐PDMAEMA

We fabricate a novel cellulose acetate (CA) ultrafiltration membrane modified by block copolymer F127‐b‐ PDMAEMA, which is synthesized using F127 and DMAEMA via the ARGET ATRP method. Compared to conventional ultrafiltration membranes, the incorporation of both F127 and PDMAEMA can not only readily increase the hydrophilicity of the membrane, but also exhibit stimuli‐responsiveness to temperature and pH. Fourier transform infrared spectroscopy (FT‐IR), nuclear magnetic resonance spectroscopy (NMR), and gel permeation chromatography (GPC) are employed to analyze the structure of the F127‐b‐PDMAEMA. The membrane properties are evaluated via scanning electron microscope (SEM) imaging, porosity test, automatic target recognition Fourier transform infrared spectroscopy (ATR‐FTIR), water contact angle test and permeation test. The results indicate that the F127‐b‐PDMAEMA is an excellent pore agent, which contributes to an enhancement of the membrane in sensitivity to temperature and pH. The modified membrane also exhibits lower water contact angle (64.5°), which is attributed to the good anti‐fouling performance and high water permeation.     

Asymmetric flow field‐flow fractionation of liposomes: 2. Concentration detection and adsorptive loss phenomena

The applicability of different concentration detection methods for online quantification of liposomes upon asymmetric flow field‐flow fractionation was investigated. Filter‐extruded egg phosphatidylcholine liposomes of different size were used. Online quantification using a differential refractive index (dRI) detector was found feasible for relatively high sample loads in the magnitude of 100 μg lipid (under the chosen fractionation conditions). UV–Vis detection of the turbidity of liposomes was ruled out as online detection method because turbidity increases with particle size and the signal is not only concentration but also particle‐size dependent. Staining of liposomes by Rhodamine phosphatidylethanolamine or Sudan Red and subsequent online UV–Vis detection at the absorption maximum of the dye enabled quantification with much higher sensitivity than dRI detection. Furthermore analyte loss and carry‐over phenomena upon repeated injection of varying liposome sample loads were studied using regenerated cellulose (RC) membranes as accumulation wall. It could be shown that RC membranes are prone to adsorption in case of very small sample loads (0.5 μg). This effect may be overcome by pre‐saturation of the membrane with sample loads of at least 2 μg. For higher sample loads adsorptive losses play a minor role. Recovery from pre‐saturated membranes reached approximately 100% and carry‐over was found negligible.     

Peptide synthesis in aqueous environments: the role of extreme conditions on amino acid activation

The free energy surfaces and reaction mechanisms underlying the activation of amino acids by COS in bulk water at ambient conditions as well as extreme temperature-pressure thermodynamic conditions were studied using accelerated ab initio molecular dynamics. The results for the reaction sequence leading from glycine to its activated form, a so-called Leuchs anhydride or alpha-amino acid N-carboxyanhydride (NCA), suggest that extreme conditions not far from the critical point of water may favor the formation of this activated species. This is traced back to appropriately affecting relative stabilities of neutral versus charged or zwitterionic molecular species which shifts equilibria, affects relative barriers, and thus modifies reaction rates. Furthermore, it is shown that the N-carboxyanhydride of glycine is not formed from N-thiocarboxyl glycine by its direct cyclization, but instead an indirect mechanism, the so-called isocyanate route, is clearly preferred at both conditions. The work quantitatively underpins the impact of extreme solvent conditions on the investigated organic reactions in aqueous media which implies that the presented results are of relevance to fields such as prebiotic chemistry and green chemistry.     

Towards novel super‐elastic foams based on isoperene rubber: Preparation and characterization

A novel and conventional closed cell polyisoprene rubber (IR) foams were produced by a single step limited‐expansion and two step unlimited‐expansion foaming process, respectively. The effect of 3 to 12 part per hundred rubber (phr) of azodicarbonamide (ADC) foaming agent on their structure and properties of developed novel foams were studied. In developed novel foams, the density was strangely independent of ADC content; however, the cell sizes conversely related to ADC content and it decreased by 60% (555‐330 μm) and the internal cell pressure build up from 1 to 3.7 atm, which was related to pressure‐free foaming method. The both reasons of compressed gas trapped inside cells and constant density not only caused unique enhancement in novel foams mechanical properties as hardness and modulus but also improved their dynamic properties as hysteresis and elasticity. Results of conventional IR foams showed that, their foam density as well as dynamic and mechanical properties sharply decreased with increasing ADC content from 3 to 12 phr. For clear expression, in samples with 12 phr of ADC, novel developed foams have more foam density (180%), more hardness (240%), more modulus (290%), and smaller cell size (75%) than conventional foams. Finally, novel developed foams were super‐elastic material with no hysteresis and no plastic deformation while conventional foams had 40% hysteresis and 10% plastic deformation under the same compression conditions.     

Aerobic Double Dehydrogenative Cross Coupling between Cyclic Saturated Ketones and Simple Arenes

The synthesis of 3‐aryl‐2‐cyclohexenones is a topic of current interest as they are not only privileged structures in bioactive molecules, but they are also relevant feedstocks for the synthesis of substituted phenols or anilines, which are ubiquitous structural elements both in drug design and medicinal chemistry. A simple and sustainable one‐pot aerobic double dehydrogenative reaction under mild conditions for the introduction of arenes in the β‐position of cyclic ketones has been developed. Starting from the corresponding saturated ketone, this reaction sequence proceeds under relatively low Pd catalyst loading and involves catalytic amounts of electron‐transfer mediators (ETMs) under ambient oxygen pressure.     

Understanding and tuning of polymer surfaces for dialysis applications

Tailoring membrane properties for biomedical applications, e.g., hemodialysis, have been a challenge which material scientists have been addressing for last few decades. The fundamental challenge lies in identifying and controlling the parameters which are responsible for yielding cytocompatibility and hemocompatibility to the material. The present article is an attempt to understand the physical parameters which are responsible for the biological manifestations of a polymer membrane. Two types of dialysis membranes, viz., high performance membrane and high cutoff, have been synthesized. Membrane surfaces were modified via dry and wet annealing, and conditions of annealing were optimized. Subsequently, physical and surface properties of the membranes after annealing were investigated. In‐depth investigation of biological and blood response has been undertaken on the basis of fundamental parameters like polarizability and surface rigidity. Cell adhesion, proliferation, protein adsorption, hemolysis, platelet adhesion, thrombus formation, and complement activation tests were performed on the membranes. It was observed that dry heating increases surface smoothness but in the process develops cracks on membrane surface as well as increases work of adhesion for blood contact. On the other hand, wet heating of membrane surface not only improves biological performance but it is also easy to retrofit with existing spinning technologies for spinning dialysis membranes. In‐house spinning technology was used to synthesize hemodialysis membranes which were annealed at the optimized conditions, and their surfaces were compared with commercial fibers to ascertain the rationale of annealing as a facile method to lend desired surface properties to membranes. Copyright © 2016 John Wiley & Sons, Ltd.     

Toward Extreme Biophysics: Deciphering the Infrared Response of Biomolecular Solutions at High Pressures

Biophysics under extreme conditions is the fundamental platform for scrutinizing life in unusual habitats, such as those in the deep sea or continental subsurfaces, but also for putative extraterrestrial organisms. Therefore, an important thermodynamic variable to explore is pressure. It is shown that the combination of infrared spectroscopy with simulation is an exquisite approach for unraveling the intricate pressure response of the solvation pattern of TMAO in water, which is expected to be transferable to biomolecules in their native solvent. Pressure‐enhanced hydrogen bonding was found for TMAO in water. TMAO is a molecule known to stabilize proteins against pressure‐induced denaturation in deep‐sea organisms.     

Mechanical properties of Nafion and titania/Nafion composite membranes for polymer electrolyte membrane fuel cells

Measurements of the mechanical and electrical properties of Nafion and Nafion/titania composite membranes in constrained environments are reported. The elastic and plastic deformation of Nafion‐based materials decreases with both the temperature and water content. Nafion/titania composites have slightly higher elastic moduli. Thecomposite membranes exhibit less strain hardening than Nafion. Composite membranes also show a reduction in the long‐time creep of ～40% in comparison with Nafion. Water uptake is faster in Nafion membranes recast from solution in comparison with extruded Nafion. The addition of 3–20 wt % titania particles has minimal effect on the rate of water uptake. Water sorption by Nafion membranes generates a swelling pressure of ～0.55 MPa in 125‐μm membranes. The resistivity of Nafion increases when the membrane is placed under a load. At 23 °C and 100% relative humidity, the resistivity of Nafion increases by ～15% under an applied stress of 7.5 MPa. There is a substantial hysteresis in the membrane resistivity as a function of the applied stress depending on whether the pressure is increasing or decreasing. The results demonstrate how the dynamics of water uptake and loss from membranes are dependent on physical constraints, and these constraints can impact fuel cell performance. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 2327–2345, 2006     

Recent developments in thermal analysis of polymers: Calorimetry in the limit of slow and fast heating rates

This review focuses on new insights into the crystal melting transition and the amorphous glass transition of polymers that have been gained through recent advances in thermoanalytical methods. The specific heat capacity can now be studied under two extreme limits, that is, under quasi‐isothermal conditions (limit of zero heating rate) and, at the other end of the scale, under rapid heating conditions (heating rates on the order of thousands of degrees per second), made possible through nanocalorimetry. The reversible melting, and multiple reversible melting, of semicrystalline polymers is explored using quasi‐isothermal temperature modulated differential scanning calorimetry, TMDSC. The excess reversing heat capacity, above the baseline, measured under nearly isothermal conditions is attributed to locally reversible surface melting and crystallization processes that do not require molecular nucleation. Observations of double reversible melting endotherms in isotactic polystyrene suggest existence of two distinct populations of crystals, each showing locally reversible surface melting. The second subject of the review, nanocalorimetry, is utilized to study samples of small mass under conditions of very fast heating and cooling. The glass transition properties of thin amorphous polymer films are observed under adiabatic conditions. The glass transition temperature appears to be independent of film thickness, and is observed even in ultra‐thin films. Recrystallization and reorganization during rapid heating are studied by nanocalorimetry of semicrystalline polymers. The uppermost endotherm seen under normal DSC scanning of poly(ethylene terephthalate) is caused by reorganization, and vanishes under the rapid heating conditions (3000K/s) provided by nanocalorimetry. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 629–636, 2005     

Temperature‐Modulated Water Filtration Using Microgel‐Functionalized Hollow‐Fiber Membranes

In the present work, we investigate the potential of aqueous polymer microgels in membrane technology, especially for filtration applications. The poly(N‐vinylcaprolactam)‐based microgels exhibit thermoresponsive behavior and were employed to coat hollow‐fiber membranes used for micro‐ and ultrafiltration. We discuss the preparation of microgel‐modified membranes (by “inside‐out” as well as “outside‐in” filtration in dead‐end mode). The clean‐water permeability and stability of these membranes was studied not only as a function of time, but also of temperature. The microgel‐modified membranes exhibit a reversible thermoresponsive behavior whereby both the resistance and the retention increased with decreasing temperature.