Temperature dependence of the crystal structure and g-values of trans-diaquabis(methoxyacetato)copper(II): evidence for a thermal equilibrium between complexes with tetragonally elongated and compressed geometries

The crystal structures of trans-diaquabis(methoxyacetato)copper(II) and the isostructural nickel(II) complex have been determined over a wide temperature range. In conjunction with the reported behavior of the g-values, the structural data suggest that the copper(II) compound exhibits a thermal equilibrium between three structural forms, two having orthorhombically distorted, tetragonally elongated geometries but with the long and intermediate bonds to different atoms, and the third with a tetragonally compressed geometry. This is apparently the first reported example of a copper(II) complex undergoing an equilibrium between tetragonally elongated and compressed forms. The optical spectrum of single crystals of the copper(II) compound is used to obtain metal-ligand bonding parameters which yield the g-values of the compressed form of the complex and hence the proportions of the complex in each structural form at every temperature. When combined with estimates of the Jahn-Teller distortions of the different forms, the latter produce excellent agreement with the observed temperature dependence of the bond lengths. The behavior of an infrared combination band is consistent with such a thermal equilibrium, as is the temperature dependence of the thermal ellipsoid parameters and the XAFS. The potential surfaces of the different forms of the copper(II) complex have been calculated by a model based upon Jahn-Teller coupling. It is suggested that cooperative effects may cause the development of the population of tetragonally compressed complexes, and the crystal packing is consistent with this hypothesis, though the present model may oversimplify the diversity of structural forms present at high temperature.     

Two isotypic transition metal germanophosphates M(II)4(H2O)4[Ge(OH)2(HPO4)2(PO4)2] (M(II) = Fe, Co): synthesis, structure, Mössbauer spectroscopy, and magnetic properties

Synthetic, structural, thermogravimetric, M?ssbauer spectroscopic, and magnetic studies were performed on two new isotypic germanophosphates, M(II)(4)(H(2)O)(4)[Ge(OH)(2)(HPO(4))(2)(PO(4))(2)] (M(II) = Fe, Co), which have been prepared under hydro-/solvo-thermal conditions. Their crystal structures, determined from single crystal data, are built from zigzag chains of M(II)O(6)-octahedra sharing either trans or skew edges interconnected by [GeP(4)O(14)(OH)(4)](8-) germanophosphate pentamers to form three-dimensional neutral framework structure. The edge-sharing M(II)O(6)-octahedral chains lead to interesting magnetic properties. These two germanophosphates exhibit a paramagnetic to antiferromagnetic transition at low temperatures. Additionally, two antiferromagnetic ordering transitions at around 8 and 6 K were observed for cobalt compound while only one at 19 K for the iron compound. Low-dimensional magnetic correlations within the octahedral chains are also observed. The divalent state of Fe in the iron compound determined from the M?ssbauer study and the isothermal magnetization as well as thermal analyses are discussed.     

Polymorphism in crystalline cinchomeronic acid

The structural relationship between the two crystal forms of cinchomeronic acid (CA 3,4-dicarboxypyridine) has been investigated by single crystal X-ray diffraction, IR and Raman spectroscopy and solid state NMR spectroscopy, showing that the two polymorphs form a monotropic system, with the orthorhombic form I being the thermodynamically stable form, while the monoclinic form II is unstable. In both forms CA crystallizes as a zwitterion and decomposes before melting. The crystal structure and spectroscopic analysis indicate that the difference in stability can be ascribed to the strength of the hydrogen-bonding patterns established by the protonated N-atom and the carboxylic/carboxylate O-atoms.     

Synthesis,spectroscopic, thermal,crystal structure properties and characterization of new Hofmann-type-like clathrates with 4-aminopyridine and water

In this study, synthesis of two new heteronuclear tetracyanonickelate(II) clathrates based on 4-aminopyridine (4AP) and guest water (H₂O) molecule and investigation of their structural properties were reported. These clathrates were characterized by using vibration spectroscopy, elemental, thermal analysis and single crystal X-ray diffraction (SC-XRD) techniques. Examining the elemental and spectral data of these clathrates, it was observed that the formulas [Zn(II)(4AP)₂Ni(µ-CN)₂(CN)₂]·6H₂O and [Cu(II)(4AP)₄Ni(µ-CN)₂(CN)₂]·H₂O were defined their structures. General information about the structural properties of these clathrates in single crystal form has been obtained by considering the changes in the characteristic peaks of the cyanide group and the 4AP that formed them. The thermal behaviors of these clathrates were obtained by examining the temperature-dependent changes of their masses. The magnetic susceptibilities of these clathrates in single crystal form were measured with a Gouy balance. According to the data obtained using SC-XRD technique, the heterometallic [Zn(II)(4AP)₂Ni(µ-CN)₂(CN)₂]·6H₂O compound has Cmcm and the heterometallic [Cu(II)(4AP)₄Ni(µ-CN)₂(CN)₂]·H₂O compound has crystal structures in the C2 / c space group.     

3,4‐Diethyl‐2,5‐dihydro‐1H‐pyrrole‐2,5‐dione

In the crystal structure of the title compound, C₈H₁₁NO₂, three distinct mol­ecules are present in the asymmetric unit. The mol­ecules are organized in two different hydrogen‐bonded tapes, which form a complex layered structure. A structural comparison with the crystal structures of related maleimide derivatives unravels a stepwise evolution of morphological complexity with increasing mol­ecular complexity for this class of compounds.     

Growth and studies of thiourea urea magnesium chloride (TUMC) single crystals

A new semi organic Non-linear optical (NLO) crystal thiourea urea magnesium chloride (TUMC) was grown by slow evaporation technique at room temperature. Good quality single crystals were grown within 20?days. The FTIR spectrum of title compound was recorded and vibrational assignments were made. The recorded UV?Cvis spectrum shows the optical transmission property of the crystal. The Second harmonic generation (SHG) of TUMC crystal was tested by Kurtz?CPerry method using Nd:YAG laser and the result confirms that the grown crystal exhibits NLO property. To analyse the thermal stability of the crystal TG/DTA analysis were made. Detailed structural analysis of the compound is under progress.     

Metal-complex assemblies constructed from the flexible hinge-like ligand H2bhnq: structural versatility and dynamic behavior in the solid state

Novel metal-complex assemblies constructed from the flexible hinge-like ligand H(2)bhnq (H(2)bhnq=2,2'-bi(3-hydroxy-1,4-naphthoquinone)) have been synthesized. The X-ray crystal structures of these compounds reveal that four types of architectures are accessible by variation of the metal ions. In copper(II) compounds 1-3, the chelating bhnq(2-) ions bridge copper(II) centers to form one-dimensional zigzag chains. The chains of 1-3 are arranged by hydrogen-bonding interactions and stacking interactions to produce porous structures. Cobalt(II) and zinc(II) compounds 4 and 5 form one-dimensional helical chains. In 4 and 5, the crystal packing induces spontaneous resolution of the helical chains with chiral cavities formed perpendicular to the helices. Nickel(II) compounds 6 and 7 form cyclic tetramers. The fourth architecture, a dimer (compound 8), is obtained by the reaction of zinc(II) and bhnq(2-) in MeOH. In these compounds, changes of the dihedral angles and the metal-coordination mode of the bhnq(2-) ion induce the structural versatility. The assemblies of the zigzag chains of the copper(II) compounds exhibit reversible vapochromic behavior. UV/Vis, powder X-ray diffraction, EPR, and adsorption isotherm measurements indicate that this vapochromic behavior is based on the hinge-like flexibility of the bhnq(2-) ion.     

Determination of the Crystal Structure of a New Polymorph of Theophylline

A new approach to crystal structure determination, combining crystal structure prediction and transmission electron microscopy, was used to identify a potential new crystal phase of the pharmaceutical compound theophylline. The crystal structure was determined despite the new polymorph occurring as a minor component in a mixture with Form II of theophylline, at a concentration below the limits of detection of analytical methods routinely used for pharmaceutical characterisation. Detection and characterisation of crystallites of this new form were achieved with transmission electron microscopy, exploiting the combination of high magnification imaging and electron diffraction measurements. A plausible crystal structure was identified by indexing experimental electron‐diffraction patterns from a single crystallite of the new polymorph against a reference set of putative crystal structures of theophylline generated by global lattice energy minimisation calculations.     

含能配合物[Zn(DAT)6](ClO4)2(DAT＝1,5-二氨基四唑)的合成、晶体结构及性质

采用直接法合成了新型高氮含能配合物[Zn(DAT)₆](ClO₄)₂(DAT＝1,5-二氨基四唑), 并用元素分析、傅立叶变换红外光谱对其结构进行了表征. 利用缓慢蒸发溶剂法培养出其单晶, 采用X射线单晶衍射仪测定其晶体结构, 结果表明该晶体属于三方晶系, 空间群, a＝b＝1.18398(9) nm, c＝0.65700(10) nm, γ＝120°, V＝0.79760(15) nm³, Z＝1. 在目标配合物的最小不对称单元中有1个Zn^2＋, 6个DAT分子和2个. 来自6个DAT分子的6个N原子分别与中心Zn^2＋配位, 形成一个六配位、非中心对称的畸变八面体结构. 用差示扫描量热分析、热重-微分热重分析结合红外光谱研究了标题化合物的热分解机理以及分解反应动力学参数. 测定了标题配合物的感度性能, 结果表明标题配合物具有一定的摩擦感度.     

Investigation of (1R,2S)‐(−)‐Ephedrine by Cryogenic Terahertz Spectroscopy and Solid‐State Density Functional Theory

The terahertz (THz) spectrum of the pharmaceutical (1R,2S)‐(?)‐ephedrine from 8.0 to 100.0 cm^?1 is investigated at liquid‐nitrogen (78.4 K) temperature. The spectrum exhibits several distinct features in this range that are characteristic of the crystal form of the compound. A complete structural analysis and vibrational assignment of the experimental spectrum is performed using solid‐state density functional theory (DFT) and cryogenic single‐crystal X‐ray diffraction. Theoretical modeling of the compound includes an array of density functionals and basis sets with the final assignment of the THz spectrum performed at a PW91/6‐311G(d,p) level of theory, which provides excellent solid‐state simulation agreement with experiment. The solid‐state analysis indicates that the seven experimental spectral features observed at low temperature consist of 13 IR‐active vibrational modes. Of these modes, nine are external crystal vibrations and provide approximately 57 % of the predicted spectral intensity. This study demonstrates that the THz spectra of complex pharmaceuticals may be well reproduced by solid‐state DFT calculations and that inclusion of the crystalline environment is necessary for realistic and accurate simulations.     

Loading-dependent structures of CO2 in the flexible molecular van der Waals host p-tert-butylcalix[4]arene with 1 : 1 and 2 : 1 guest-host stoichiometries

The adsorption of CO(2) into the low density form of p-tert-butylcalix[4]arene (tBC) has been studied by (13)C solid state NMR, single crystal X-ray diffraction and volumetric adsorption measurements. The experimental results indicate that tBC and carbon dioxide can form two distinct inclusion compounds. At low loadings the structure of the empty low-density form of the tBC framework (space group P2(1)/n) is preserved with the included CO(2) molecules located within the conical cavities of the tBC molecules. The ideal composition of this form is therefore 1 : 1 (CO(2) : tBC). With higher applied CO(2) pressures the guest loading increases and the structure of the tBC framework transforms to a well studied tetragonal (space group P4/n) form. In this form an additional CO(2) molecule is located on an interstitial site resulting in an ideal composition 2 : 1 (CO(2) : tBC). In agreement with SCXRD and the gas adsorption measurements, (13)C NMR measurements show the change in structure that takes place as a function of sample loading. Inclusion of CO(2) is a rather slow activated process that can be accelerated by increasing the temperature and the transition between crystal forms is inhomogeneous over a bulk sample. After gas release, the empty (or near empty) P4/n structure survives, thus providing another low density phase of tBC. The magnitude and temperature variation of the (13)C chemical shift anisotropy of CO(2) in both low and high occupancy complexes with tBC indicates restricted motion of the CO(2) molecules. The location and dynamics of CO(2) molecules inside the tBC structure are discussed and a motional model for CO(2) is proposed. The CO(2) molecules in the highly loaded compound are shown to exchange rapidly as a single resonance is observed for the two distinct CO(2) molecules.     

Elastically Flexible Crystals have Disparate Mechanisms of Molecular Movement Induced by Strain and Heat

Elastically flexible crystals form an emerging class of materials that exhibit a range of notable properties. The mechanism of thermal expansion in flexible crystals of bis(acetylacetonato)copper(II) is compared with the mechanism of molecular motion induced by bending and it is demonstrated that the two mechanisms are distinct. Upon bending, individual molecules within the crystal structure reversibly rotate, while thermal expansion results predominantly in an increase in intermolecular separations with only minor changes to molecular orientation through rotation.     

Studies on solid-state proton transfer along hydrogen bond of pyrazolone-ring

Evidence from the time-dependent UV-vis reflection spectra studies indicates the compound 1-phenyl-3-methyl-4-(4-methylbenzal)-5-pyrazolone 4-ethylthiosemicarbazone (PM4MBP-ETSC) undergoes a solid-state photochromism. The reaction rate constant was studied by the first-order kinetics curves. X-ray single crystal structural analysis shows that the pyrazolone-ring stabilizes in the keto form. The conclusion can be made that its photochromism in crystalline is associated with a photoinduced proton transfer reaction (inter- and intra-molecular hydrogen transfer) along hydrogen bond leading to a colored tautomer as the compound crystallizes in H-bonded supramolecular configuration.     

Closed-pore crystal capable of adsorbing CO2 onto isolated cavities generated by disorderly mixing of substituents on host skeleton

A single crystal adsorbent, [Rh(II)(2)(bza)(4)(2,3-empyz)](n) (2,3-empyz = 2-ethyl-3-methylpyrazine) (1), was synthesized by self-assembly reaction of a Rh(2) benzoate complex and substituted pyrazine linker. The compound consists of one-dimensional zigzag chains, which generated a closed-pore structure without channels. The cavities were statistically generated by the static disorder of substituents on pyrazine and are separated by long intervals within the crystal. The property of CO(2) absorption was characterized in this closed-pore system. The CO(2) inclusion structure was determined by single-crystal X-ray diffraction measurements. These studies suggest that CO(2) molecules were adsorbed and diffused in the nonporous crystal with the isolated cavities.     

In situ Crystallization Technique – an Approach to Circumvent Crystal Structures with high Z′‐Crystallization Behavior of (CF3)2C–OH

In situ crystallization on the diffractometer of 1,1,1,3,3,3‐hexafluoro‐2‐propanol (HFIP) with and without pyridine allows to obtain the new polymorphic form II of HFIP and the cocrystal HFIP‐pyridine. In contrast of the known HFIP form I, single‐crystal X‐ray diffraction analysis of HFIP form II shows a reduced number of molecules in the asymmetric unit (form I: Z′ = 8, form II: Z′ = 4) Furthermore, UNI Force Field calculations were used to gain a deeper understanding of the intermolecular potentials of the main interactions of the described crystal structures.     

Reversible structural isomerisation in rare thioether complexes of cobalt(II)--effects of ligand architecture

Rare examples of (high spin) Co(II) complexes with geometrically constrained tetrathioether ligands exhibit a very unusual structural isomerism, switching reversibly between tetrahedral monomers in solution and octahedral chain polymers in the solid; the crystal structures of one polymeric species and a tetrahedral monomer model compound are described.     

Extensive structural change of the envelope protein of dengue virus induced by a tuned ionic strength: conformational and energetic analyses

The Dengue has become a global public health threat, with over 100 million infections annually; to date there is no specific vaccine or any antiviral drug. The structures of the envelope (E) proteins of the four known serotype of the dengue virus (DENV) are already known, but there are insufficient molecular details of their structural behavior in solution in the distinct environmental conditions in which the DENVs are submitted, from the digestive tract of the mosquito up to its replication inside the host cell. Such detailed knowledge becomes important because of the multifunctional character of the E protein: it mediates the early events in cell entry, via receptor endocytosis and, as a class II protein, participates determinately in the process of membrane fusion. The proposed infection mechanism asserts that once in the endosome, at low pH, the E homodimers dissociate and insert into the endosomal lipid membrane, after an extensive conformational change, mainly on the relative arrangement of its three domains. In this work we employ all-atom explicit solvent Molecular Dynamics simulations to specify the thermodynamic conditions in that the E proteins are induced to experience extensive structural changes, such as during the process of reducing pH. We study the structural behavior of the E protein monomer at acid pH solution of distinct ionic strength. Extensive simulations are carried out with all the histidine residues in its full protonated form at four distinct ionic strengths. The results are analyzed in detail from structural and energetic perspectives, and the virtual protein movements are described by means of the principal component analyses. As the main result, we found that at acid pH and physiological ionic strength, the E protein suffers a major structural change; for lower or higher ionic strengths, the crystal structure is essentially maintained along of all extensive simulations. On the other hand, at basic pH, when all histidine residues are in the unprotonated form, the protein structure is very stable for ionic strengths ranging from 0 to 225 mM. Therefore, our findings support the hypothesis that the histidines constitute the hot points that induce configurational changes of E protein in acid pH, and give extra motivation to the development of new ideas for antivirus compound design.     

On the preparation of coordination polymers by controlled thermal decomposition: synthesis, crystal structures, and thermal properties of zinc halide pyrazine coordination compounds

The five zinc(II) halide pyrazine coordination compounds poly-bis(mu2-pyrazine)-dichloro-zinc(II) (I), poly-(mu2-pyrazine-N,N')-dichloro-zinc(II) (II), poly-bis(mu2-pyrazine-N,N')-dibromo-zinc(II) (III), catena-(mu2-pyrazine-N,N')-dibromo-zinc(II) (IV), and catena-(mu-pyrazine)-diiodo-zinc(II) (V) were prepared by the reaction of ZnX2 (X = Cl, Br, I) with pyrazine in acetonitrile. In the crystal structure of compound I, the zinc atoms are coordinated by two chlorine atoms and two pyrazine ligands within distorted tetrahedra. The zinc atoms are linked by the N-donor ligands into layers. The crystal structure of compound III is very similar to that of compound I. The structure of compound III was originally reported in space group Ccca with similar a and b axes, but it was proved that the correct space group is I4/mmm. Ligand-poor compound V is isotypic to compound IV, in which ZnX2 units (X = Br, I) are connected by the pyrazine ligands into chains. It was originally reported in the noncentrosymmetric space group P2(1), but we found that the correct space group is P2(1)/m. If ligand-rich 1:2 compounds I and III are heated in a thermobalance, different mass steps are observed. We have proven that in the first step, ligand-poor compounds II and IV are formed in quantitative yields. On further heating, a second mass step occurs that leads to the formation of two new compounds of composition (ZnCl2)2(pyrazine) (VI) and (ZnBr2)2(pyrazine) (VII). However, the mass step is not well-resolved. and the new compounds are not phase-pure after the thermal event. If ligand-poor 1:1 compound V is investigated by thermogravimetry, a not-well-resolved single mass step is observed in which new ligand-poor 2:1 compound (ZnI2)2(pyrazine) (VIII) is formed. On further heating, all 2:1 compounds lose their remaining ligands and transform into the pure zinc(II) halides.     

新的富金属三组元层状碲化物TaNi2Te2的合成和晶体结构

通过高温固相反应合成了标题化合物并测定了其晶体结构．结晶学参数：正交晶系，空间群Pnma，Z＝4，α＝0.6480(1)；b＝0.35639(6)，c＝1.6994(4) nm，V＝0.3925(1) nm，D_c＝9.37 g·cm~(-3)，λ(MoK_α)＝0.071069 nm，μ(MoK_α)＝514.43 cm~(－1)，F(000)＝932，最终偏离因子R＝0.051．TaNi_2Te_2是一新的富金属三级元层状碲化物，在结构中两层金属原子夹于碲原子层之间，形成对Ta原子的平面三角形碲配位和对Ni原子的三角锥碲配位．演化合物的一个重要结构特征是平面形的五元环TeNi_4孪合形成扩展结构而每个Ta原子夹于两个TeNi_4五元环之间．