Ultrasensitive Measurement of Ca2+ Influx into Lipid Vesicles Induced by Protein Aggregates

To quantify and characterize the potentially toxic protein aggregates associated with neurodegenerative diseases, a high‐throughput assay based on measuring the extent of aggregate‐induced Ca²⁺ entry into individual lipid vesicles has been developed. This approach was implemented by tethering vesicles containing a Ca²⁺ sensitive fluorescent dye to a passivated surface and measuring changes in the fluorescence as a result of membrane disruption using total internal reflection microscopy. Picomolar concentrations of Aβ42 oligomers could be observed to induce Ca²⁺ influx, which could be inhibited by the addition of a naturally occurring chaperone and a nanobody designed to bind to the Aβ peptide. We show that the assay can be used to study aggregates from other proteins, such as α‐synuclein, and to probe the effects of complex biofluids, such as cerebrospinal fluid, and thus has wide applicability.     

On the Structure of PHB (=Poly[(R)‐3‐hydroxybutanoic Acid]) in Phospholipid Bilayers: Preparation of Trifluoromethyl‐Labeled Oligo[(R)‐3‐hydroxybutanoic Acid] Derivatives

Oligomers of (R)‐3‐hydroxybutanoate (OHB) have previously been shown to transport cations through lipid bilayers. The ion‐transport activity has been attributed to the formation of hydrophobic aggregates or pores, which have been identified by fluorescence‐microscopy measurements of membrane‐incorporated fluorescence‐labeled OHBs. To obtain more information about these aggregates, we describe here the synthesis of the specifically F‐labeled HB oligomers II – IV for structural investigation by means of solid‐state ¹⁹F‐NMR spectroscopic techniques.     

Perfluorophenyl‐Bifuran: A Stable and Fluorescent Material Exhibiting Mechanofluorochromic Behavior

π‐Conjugated oligomers and polymers consisting of bifuran units are applied in optoelectronic devices, because bifuran units endow such devices with superior properties compared with their thiophene analogs. However, as is true for most furan oligomers, bifuran oligomers suffer from low photostability, which restricts their application. In this work, we present the synthesis and the photophysical and structural characterization of perfluorinated phenyl bifuran ( PFB‐2F ), which displays high photostability, while maintaining strong fluorescence quantum efficiency in both solution and the solid state. X‐Ray crystallography reveals that, unlike its thiophene analog, PFB‐2F has a completely planar backbone, with slip‐stacked packing and short interplanar distances. PFB‐2F crystals display mechanofluorochromic behavior, which renders perfluorophenyl‐substituted oligofurans potential candidates for both stable optoelectronic devices and responsive optical materials.     

Influence of the β‐Sheet Content on the Mechanical Properties of Aggregates during Amyloid Fibrillization

Amyloid fibrils associated with neurodegenerative diseases, such as Parkinson’s and Alzheimer’s, consist of insoluble aggregates of α‐synuclein and Aβ‐42 proteins with a high β‐sheet content. The aggregation of both proteins occurs by misfolding of the monomers and proceeds through the formation of intermediate oligomeric and protofibrillar species to give the final fibrillar cross‐β‐sheet structure. The morphological and mechanical properties of oligomers, protofibrils, and fibrils formed during the fibrillization process were investigated by thioflavin T fluorescence and circular dichroism in combination with AFM peak force quantitative nanomechanical technique. The results reveal an increase in the Young’s modulus during the transformation from oligomers to mature fibrils, thus inferring that the difference in their mechanical properties is due to an internal structural change from a random coil to a structure with increased β‐sheet content.     

A Hexameric Peptide Barrel as Building Block of Amyloid‐β Protofibrils

Oligomeric and protofibrillar aggregates formed by the amyloid‐β peptide (Aβ) are believed to be involved in the pathology of Alzheimer’s disease. Central to Alzheimer pathology is also the fact that the longer Aβ₄₂ peptide is more prone to aggregation than the more prevalent Aβ₄₀. Detailed structural studies of Aβ oligomers and protofibrils have been impeded by aggregate heterogeneity and instability. We previously engineered a variant of Aβ that forms stable protofibrils and here we use solid‐state NMR spectroscopy and molecular modeling to derive a structural model of these. NMR data are consistent with packing of residues 16 to 42 of Aβ protomers into hexameric barrel‐like oligomers within the protofibril. The core of the oligomers consists of all residues of the central and C‐terminal hydrophobic regions of Aβ, and hairpin loops extend from the core. The model accounts for why Aβ₄₂ forms oligomers and protofibrils more easily than Aβ₄₀.     

Controlling the π‐Stacking Behavior of Pyrene Derivatives: Influence of H‐Bonding and Steric Effects in Different States of Aggregation

The performance of opto‐electronic devices built from low‐molecular‐weight dye molecules depends crucially on the stacking properties and the resulting coupling of the chromophoric systems. Herein we investigate the influence of H‐bonding amide and bulky substituents on the π‐stacking of pyrene‐containing small molecules in dilute solution, as supramolecular aggregates, and in the solid state. A set of four pyrene derivatives was synthesized in which benzene or 4‐tert‐butyl benzene was linked to the pyrene unit either through an ester or an amide. All four molecules form supramolecular H‐aggregates in THF solution at concentrations above 1×10^?4 mol L^?1. These aggregates were transferred on a solid support and crystallized. We investigate: the excimer formation rates within supramolecular aggregates; the formation of H‐bonds as well as the optical changes during the transition from the amorphous to the crystalline state; and the excimer to monomer fluorescence ratio in crystalline films at low temperatures. We reveal that in solution supramolecular aggregation depends predominantly on the pyrene chromophores. In the crystalline state, however, the pyrene stacking can be controlled gradually by H‐bonding and steric effects. These results are further confirmed by molecular modeling. This work bears fundamental information for tailoring the solid state of functional optoelectronic materials.     

Dispersion and Orientation of Zeolite ZSM‐5 Crystallites within a Fluid Catalytic Cracking Catalyst Particle

Confocal fluorescence microscopy was employed to selectively visualize the dispersion and orientation of zeolite ZSM‐5 domains inside a single industrially applied fluid catalytic cracking (FCC) catalyst particle. Large ZSM‐5 crystals served as a model system together with the acid‐catalyzed fluorostyrene oligomerization reaction to study the interaction of plane‐polarized light with these anisotropic zeolite crystals. The distinction between zeolite and binder material, such as alumina, silica, and clay, within an individual FCC particle was achieved by utilizing the anisotropic nature of emitted fluorescence light arising from the entrapped fluorostyrene‐derived carbocations inside the zeolite channels. This characterization approach provides a non‐invasive way for post‐synthesis characterization of an individual FCC catalyst particle in which the size, distribution, orientation, and amount of zeolite ZSM‐5 aggregates can be determined. It was found that the amount of detected fluorescence light originating from the stained ZSM‐5 aggregates corresponds to about 15 wt %. Furthermore, a statistical analysis of the emitted fluorescence light indicated that a large number of the ZSM‐5 domains appeared in small sizes of about 0.015–0.25 μm², representing single zeolite crystallites or small aggregates thereof. This observation illustrated a fairly high degree of zeolite dispersion within the FCC binder material. However, the highest amount of crystalline material was aggregated into larger domains (ca. 1–5 μm²) with more or less similarly oriented zeolite crystallites. It is clear that this visualization approach may serve as a post‐synthesis quality control on the dispersion of zeolite ZSM‐5 crystallites within FCC particles.     

Self‐Association of an Enantiopure β‐Pentapeptide in Nematic Liquid Crystals

Herein, we report for the first time that nematic liquid‐crystalline environments drive the reversible self‐aggregation of an enantiopure β‐pentapeptide into oligomers with a well‐defined structure. The peptide contains four (1S,2S)‐2‐aminocyclopentane carboxylic acid (ACPC) residues and the paramagnetic β‐amino acid (3R,4R)‐4‐amino‐1‐oxyl‐2,2,5,5‐tetramethylpyrrolidine‐3‐carboxylic acid (POAC). The structure of the oligomers was investigated by electron paramagnetic resonance (EPR) spectroscopy, which allowed us to obtain the intermonomer distance distribution in the aggregates as a function of peptide concentration in two nematic liquid crystals, E7 and ZLI‐4792. The aggregates were modeled on the basis of the EPR data, and their orientation and order in the nematic phase were studied by the surface tensor method.     

Cytotoxic Oligomers and Fibrils Trapped in a Gel‐like State of α‐Synuclein Assemblies

α‐Synuclein (α‐Syn) aggregation is associated with Parkinson's disease (PD) pathogenesis. In PD, the role of oligomers versus fibrils in neuronal cell death is debatable, but recent studies suggest oligomers are a proximate neurotoxin. Herein, we show that soluble α‐Syn monomers undergo a transformation from a solution to a gel state on incubation at high concentration. Detailed characterization of the gel showed the coexistence of monomers, oligomers, and short fibrils. In vitro, the gel was highly cytotoxic to human neuroblastoma cells. The individual constituents of the gel are short‐lived species but toxic to the cells. They comprise a structurally heterogeneous population of α‐helical and β‐sheet‐rich oligomers and short fibrils with the cross‐β motif. Given the recent evidence of the gel‐like state of the protein associated with neurodegenerative diseases, the gel state of α‐Syn in this study represents a mechanistic and structural model for the in vivo toxicity of α‐Syn in PD.     

Effect of the Bulkiness of the End Functional Amide Groups on the Optical,Gelation, and Morphological Properties of Oligo(p‐phenylenevinylene) π‐Gelators

Herein, we describe the role of end functional groups in the self‐assembly of amide‐functionalized oligo(p‐phenylenevinylene) (OPV) gelators with different end‐groups. The interplay between hydrogen‐bonding and π‐stacking interactions was controlled by the bulkiness of the end functional groups, thereby resulting in aggregates of different types, which led to the gelation of a wide range of solvents. The variable‐temperature UV/Vis absorption and fluorescence spectroscopic features of gelators with small end‐groups revealed the formation of 1D H‐type aggregates in CHCl₃. However, under fast cooling in toluene, 1D H‐type aggregates were formed, whereas slow cooling resulted in 2D H‐type aggregates. OPV amide with bulky dendritic end‐group formed hydrogen‐bonded random aggregates in toluene and a morphology transition from vesicles into fibrous aggregates was observed in THF. Interestingly, the presence of bulky end‐group enhanced fluorescence in the xerogel state and aggregation in polar solvents. The difference between the aggregation properties of OPV amides with small and bulky end‐groups allowed the preparation of self‐assembled structures with distinct morphological and optical features.     

Chiral J‐Aggregates of Atropo‐Enantiomeric Perylene Bisimides and Their Self‐Sorting Behavior

Herein we report on structural, morphological, and optical properties of homochiral and heterochiral J‐aggregates that were created by nucleation–elongation assembly of atropo‐enantiomerically pure and racemic perylene bisimides (PBIs), respectively. Our detailed studies with conformationally stable biphenoxy‐bridged chiral PBIs by UV/Vis absorption, circular dichroism (CD) spectroscopy, and atomic force microscopy (AFM) revealed structurally as well as spectroscopically quite different kinds of J‐aggregates for enantiomerically pure and racemic PBIs. AFM investigations showed that enantiopure PBIs form helical nanowires of unique diameter and large length‐to‐width ratio by self‐recognition, while racemic PBIs provide irregular‐sized particles by self‐discrimination of the enantiomers at the stage of nucleation. Steady‐state fluorescence spectroscopy studies revealed that the photoluminescence efficiency of homochiral J‐aggregated nanowires (47±3 %) is significantly higher than that of heterochiral J‐aggregated particle‐like aggregates (12±3 %), which is explained in terms of highly ordered molecular stacking in one‐dimensional nanowires of homochiral J‐aggregates. Our present results demonstrate the high impact of homochirality on the construction of well‐defined nanostructures with unique optical properties.     

Stimulated emission and ultrafast optical switching in a ter(9,9′‐spirobifluorene)‐co‐methylmethacrylate copolymer

A methacrylate‐functionalized 9,9′‐spirobifluorene trimer is copolymerized with methylmethacrylate (MMA). The photophysical characterization of this copolymer using pump‐probe studies, in solution, as films and in plastic optical fibers (POFs) demonstrates that it shows interesting photonic properties for data communication such as high‐stimulated emission cross section (σ_SE = 2.5 × 10^?16 cm²), good thermal, and optical stability, the ability to perform all‐optical ultrafast switching, and low attenuation when doped into POFs. In addition, the material shows interesting optically induced conformational control in solution and the studies demonstrate the surprising result that intrachain polaron pairs can be generated even in well‐isolated 3‐unit oligomers. Although the material is not yet soluble enough in MMA to create highly efficient photonic devices and the gain spectrum is not optimized to overlap with the region of low attenuation in polymethylmethacrylate POFs, these studies are a good starting point to further optimize copolymers for incorporation into POF networks. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2010     

The effect of branching on the physical properties of 73/27 4‐hydroxybenzoic acid/2‐hydroxy‐6‐naphthoic acid

The 73/27 4‐hydroxybenzoic acid (HBA)/2‐hydroxy‐6‐naphthoic acid (HNA) copolyester was prepared by the inclusion of two crosslinkable oligomers. These systems were synthesized by melt polymerization and characterized using differential scanning calorimetry, thermogravimetric analysis, polarized optical microscope and wide‐angle X‐ray diffraction. The transition from thermoplastic to thermosetting character occurred when 10 wt% or above of oligomer was added to the 73/27 HBA/HNA random mixture. The melt rheology of the HBA/HNA copolyesters containing two oligomers was investigated. The copolyesters displayed an increase in complex viscosity and transition from liquid‐like to solid‐like behavior as the oligomer content increased, and finally there was no melting transition when the oligomer content reached 10 wt%. Shear storage modulus measured by a dielectric mechanical analysis decreased slightly with increasing oligomer content. An adhesive test using an aluminum sheet revealed an increase in the lap shear strength up to 5 wt% of oligomer content without a significant reduction in shear storage modulus. On the other hand, the 73/27 HBA/HNA containing 10 wt% oligomer displayed a dramatic decrease in lap shear strength. Copyright © 1999 John Wiley & Sons, Ltd.     

Inducing Axial Chirality in a “Geländer” Oligomer by Length Mismatch of the Oligomer Strands

Helical molecules are not only esthetically appealing due to their structural beauty, they also display unique physical properties as a result of their chirality. We describe herein a new approach to “Geländer” oligomers by interlinking two oligomer strands of different length. To compensate for the dimensional mismatch, the longer oligo(benzyl ether) oligomer wraps around the oligophenyl backbone. The new “Geländer” oligomer 1 was assembled in a sequence of functional‐group transformations and cross‐coupling steps followed by final cyclizations based on nucleophilic substitution reactions, and was fully characterized, including X‐ray diffraction analysis. The isolation of pure enantiomers enabled the racemization process to be studied by circular dichroism spectroscopy.     

Modulating Photo‐ and Electroluminescence in a Stimuli‐Responsive π‐Conjugated Donor–Acceptor Molecular System

Functional organic materials that display reversible changes in fluorescence in response to external stimuli are of immense interest owing to their potential applications in sensors, probes, and security links. While earlier studies mainly focused on changes in photoluminescence (PL) color in response to external stimuli, stimuli‐responsive electroluminescence (EL) has not yet been explored for color‐tunable emitters in organic light‐emitting diodes (OLEDs). Here a stimuli‐responsive fluorophoric molecular system is reported that is capable of switching its emission color between green and orange in the solid state upon grinding, heating, and exposure to chemical vapor. A mechanistic study combining X‐ray diffraction analysis and quantum chemical calculations reveals that the tunable green/orange emissions originate from the fluorophore's alternating excited‐state conformers formed in the crystalline and amorphous phases. By taking advantage of this stimuli‐responsive fluorescence behavior, two‐color emissive OLEDs were produced using the same fluorophore in different solid phases.     

Excited‐state energy dynamics of conjugated polycarbogermane oligomers: Introduction effects of germanium atom into π‐conjugated molecular system

Excited‐state energy dynamics of the conjugated polycarbogermane oligomers, poly{[1,4‐bis(thiophenyl)buta‐1,3‐diyne]‐alt‐(dimethylgermane)} (PBTBD‐DMG; n = 33), poly{[1,4‐bis‐(thiophenyl)buta‐1,3‐diyne]‐alt‐(diphethylgermane)} (PBTBD‐DPG; n = 12), poly{[1,4‐bis(phenyl)buta‐1,3‐diyne]‐alt‐(dimethylgermane)} (PBPBD‐DMG; n = 36), and poly{[1,4‐bis(phenyl)buta‐1,3‐diyne]‐alt‐(diphenylgermane)} (PBPBD‐DPG; n = 2), were investigated by steady‐state and picosecond time‐resolved fluorescence spectroscopies in liquid solution. The introduction effect of a germanium atom into π‐conjugated oligomer backbones and the substitution effect of a methyl or phenyl group on the germanium atom are discussed from solvent polarity‐dependent studies. Steady‐state and time‐resolved fluorescence studies on the thiophene‐containing polycarbogermane (PBTBD‐DMG and PBTBD‐DPG) oligomers revealed considerable solvent polarity‐dependent characteristics, whereas those of the phenylene‐containing polycarbogermane (PBPBD‐DMG and PBPBD‐DPG) oligomers do not significantly show such characteristics. As the solvent polarity increased from n‐hexane to tetrahydrofuran, the steady‐state fluorescence spectra of PBTBD‐DMG and PBTBD‐DPG oligomers were significantly redshifted, and their fluorescence lifetimes seemed to change from ～624 to ～46 ps. These results suggest that the excited‐state dynamics of PBTBD‐DMG and PBTBD‐DPG oligomers are related to an intramolecular charge transfer (ICT) emission process through (d‐p) π conjugation between the π‐conjugated system and unoccupied 4d orbitals of the germanium atom. These results are supported by quantum chemical (AM1 and CNDO/2) calculations. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 1298–1306, 2002     

End‐functionalization of semiconducting species with dendronized terpyridine–Ru(II)–terpyridine complexes

Semiconducting oligomers and polymers decorated with two or one dendronized tpy‐Ru(II)‐tpy metallocomplexes are presented. Initially, free terpyridine end‐functionalized semiconducting oligomers (distyrylanthracene, quinquephenylene, mono‐ and trifluorenes) were prepared while in a second approach, atom transfer radical polymerization was employed for the preparation of side‐chain oligomeric and polymeric (oxadiazole)s using a terpyridine initiator. These terpyridine‐bearing oligomers and polymers were complexated with a Percec‐type first‐generation (G1) dendronized terpyridine–Ru(III)Cl₃ monocomplex, having two dodecyloxy groups. All oligomeric and polymeric metallocomplexes were characterized via NMR spectroscopies for their structural perfection and via UV‐Vis and PL spectroscopies for their optical properties. The existence of the organic semiconducting blocks in combination with the terpyridine–Ru(II)–terpyridine groups afforded hybrid metallo‐semiconducting species presenting the optical features of both their components. Moreover, their thin‐film morphologies were investigated through atomic force microscopy, revealing, in some cases, an organization tendency in the nanometer scale. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1939–1952, 2009     

Natural Compounds against Neurodegenerative Diseases: Molecular Characterization of the Interaction of Catechins from Green Tea with Aβ1–42, PrP106–126, and Ataxin‐3 Oligomers

By combining NMR spectroscopy, transmission electron microscopy, and circular dichroism we have identified the structural determinants involved in the interaction of green tea catechins with Aβ1–42, PrP106–126, and ataxin‐3 oligomers. The data allow the elucidation of their mechanism of action, showing that the flavan‐3‐ol unit of catechins is essential for interaction. At the same time, the gallate moiety, when present, seems to increase the affinity for the target proteins. These results provide important information for the rational design of new compounds with anti‐amyloidogenic activity and/or molecular tools for the specific targeting of amyloid aggregates in vivo.     

Significant Structural Differences between Transient Amyloid‐β Oligomers and Less‐Toxic Fibrils in Regions Known To Harbor Familial Alzheimer′s Mutations

Small oligomers of the amyloid β (Aβ) peptide, rather than the monomers or the fibrils, are suspected to initiate Alzheimer′s disease (AD). However, their low concentration and transient nature under physiological conditions have made structural investigations difficult. A method for addressing such problems has been developed by combining rapid fluorescence techniques with slower two‐dimensional solid‐state NMR methods. The smallest Aβ₄₀ oligomers that demonstrate a potential sign of toxicity, namely, an enhanced affinity for cell membranes, were thus probed. The two hydrophobic regions (residues 10–21 and 30–40) have already attained the conformation that is observed in the fibrils. However, the turn region (residues 22–29) and the N‐terminal tail (residues 1–9) are strikingly different. Notably, ten of eleven known Aβ mutants that are linked to familial AD map to these two regions. Our results provide potential structural cues for AD therapeutics and also suggest a general method for determining transient protein structures.     

BF2‐Chelate Complexes of 6‐(4‐Iodophenyl)‐2,3,4,8,9,10‐hexamethyldipyrrin and 2‐(4‐Iodobenzoyl)‐3,4,5‐trimethylpyrrole: Fluorescent Dyes with a Chemical Anchor Group

The one‐pot condensation/coordination reaction of 4‐iodobenzoylchloride, 2,3,4‐trimethylpyrrole and BF₃ × Et₂O yields the BF₂ chelate complexes of the 1:1 condensation product 2‐(4‐iodobenzoyl)‐3,4,5‐trimethylpyrrole and of the 1:2 product 6‐(4‐iodophenyl)‐2,3,4,8,9,10‐hexamethyldipyrrin, as separable compounds in 6 and 38 % yield, respectively. Both new boron derivatives are fluorescent already upon exitation with ambient light. While the fluorescence quantum yield of the benzoyl derivative is very low, this value is significantly higher for the related boron dipyrrin (BODIPY) derivative. Single crystal X‐ray diffraction studies of both compounds reveal that the reason for these deviating physical properties are structural in nature. For the BODIPY an essentially flat structure of the fluorophor has been established, in addition to restricted rotation of the 4‐iodophenyl substituent, so that no conformational dynamic facilitates radiationless deactivations. The 1:1 condensation product on the other hand allows a fast equilibration of the photophysical exitation by dynamic processes and therefore exhibits a low fluorescence quantum yield. Both luminophores contain an iodoaryl moiety with potential uses for further functionalization and bioconjugation.