Expanding the structural chemistry of the weakly coordinating closo-carborane CB11H12 −: its monoiodo derivatives with and without C 5v symmetry

Two iodo derivatives of closo-CB₁₁H₁₂ ^?, i.e., 12-I-1-CB₁₁H₁₁ ^? (C _5v symmetry) and 7-I-1-CB₁₁H₁₁ ^? (C _s symmetry), were prepared (the latter for the first time) and the influence of differently positioned iodine substituents on the geometry of the CB₁₁ icosahedral core was structurally examined both by X-ray diffraction and quantum-chemical computation at the MP2 level. Observed and computed molecular geometries are in overall agreement. Supramolecular architectures of these two anionic substituted monocarboranes are shown. According to DFT computations at the ZORA-SO/BP86 level, the ¹¹B chemical shifts of the boron atoms to which iodine substituents are bonded are dominated by spin–orbit coupling. Different positions of iodine atoms in these two isomers may result in different acidities of the (C)-H atoms in the icosahedral bodies, as suggested by visually analyzing the corresponding lowest unoccupied molecular orbitals.     

ℓ-Resonance effects in the νv5, 2ν5←ν5, and ν4 + ν5←ν4 bands of C2H2 and 13C12CH2 near 13.7 μm

An extension to the previous LSCD (lower state combination difference) determination of molecular parameters involving acetylene's ν₅ fundamental and the strongest one quantum hotbands, 2ν₅←ν₅ and ν₄ + ν₅←ν₄ [J. Molec. Spectrosc. 146, 389 (1991)] has been made. A novel iterative numerical diagonalization procedure was employed to fit the vibrational states involved in the seven one quantum hotbands. This method utilizes the Hellmann—Feynman theorem to calculate first derivatives and singular value decomposition (SVD) in its least-square procedure and permits the simultaneous evaluation of the effective dipole moment responsible for the ℓ-type resonance effect upon IR intensities. A set of molecular parameters describing the rotation—vibration levels of the ground state, ν₅, ν₄, 2ν₅ and ν₄ + ν₅ for the major isotope and for ¹³C¹²CH₂ are reported based upon FT-spectrometric data taken at the McMath Solar Telescope Observatory. The improved spectroscopic parameters retrieved from this investigation will serve as a database for modelling abundances of acetylene in various astrophysical sources.     

Kinetics and Mechanism of the Insertion Reaction of Arylisocyanates into C‒C Bond of Phosphabetaine Obtained ont the Basis of Triisopropylphosphine and 2-Cyanoethylacrylate

Abstract

On the basis of kinetic investigation o f previously discovered [I] insertion reaction of arylisocyanates into C-C bond of nvitter-ions, obtained on the basis of trialkylphoshines and Z-cyanoacrylates, the mechanism of this unusual reaction has been suggested. According to this mechanism the nucleophilic attack of nvitter-ion anionic center on the carbon atom of isocyanate group and nucleophilic attack of nitrogen atom on carbethoxylic group, leading to breakup of C-C bond, carry out relatively synchronously within one transition state on the concerted mechanism.     

Simulation of the molecular and electronic structure of C60 fullerene π-complex with twelve half-sandwich species FeC5H5

The problem of existence of ⁵--complexes of fullerenes and their derivatives is discussed. The stability of the ⁵--complex C₆₀(FeCp)₁₂ (viz., icosahedral C₆₀ fullerene coated with twelve FeCp groups, each coordinated to its own pentagonal face of the fullerene cage) was first estimated in the framework of density functional approach (PBE approximation). The molecular and electronic structure of a biradical complex of C₆₀ fullerene with ten FeCp groups, C₆₀(FeCp)₁₀ (D _5d symmetry), and a 2⁵--complex of substituted fullerene H₁₀C₆₀, H₁₀C₆₀(FeCp)₂ (D _5d symmetry) in which hydrogen atoms are attached to the C atoms in the -positions relative to the atoms of the polar five-membered cycles, was simulated. According to calculations, the coated complex, I _h-C₆₀(FeCp)₁₂, should be much more stable than the complex of naked fullerene with one or two polarly located FeCp groups and only slightly less stable than the ferrocene molecule FeCp₂. The existence of C₆₀(FeCp)₁₂ and H₁₀C₆₀(FeCp)₂ complexes was suggested.     

Synthesis and Characterization of the Large Pore Molecular Sieves VPI-5 and Si-VPI-5

The large pore molecular sieves VPI-5 and Si VPI-5 were synthesized by using three organic amines (dipropylamine, diisopropylamine and dipentylamine) as the structure-directing agents. Compared with general alumlnophosphate molecular sieves, the synthesis of the molecular sieves of VPI-5 type ls of many unique features. Both VPI-5 and Si-VPI-5 were characterized by XRD, IR, TG-DTA, and MAS-NMR.     

Electrochemical and photochemical approaches for the synthesis of the C28–C38 fragment of okadaic acid

Okadaic acid, a potent and selective inhibitor of Protein Phosphatases 1 and 2A (PP1 and PP2A), is widely used as a probe for various biochemical processes. We describe herein two innovative methods for the synthesis of the terminal C28–C38 fragment of the natural polyether. Suárez photochemical oxidative cyclization and electrochemical oxidation of malonates to their ketals equivalents have been successfully applied for the assembly of the key spiroketal core.     

Synthesis of 5-fluoro- and 5-hydroxymethanoprolines via lithiation of N-BOC-methanopyrrolidines. Constrained Cγ-exo and Cγ-endo Flp and Hyp conformer mimics

Proline derivatives with a C(γ)-exo pucker typically display a high amide bond trans/cis (K(T/C)) ratio. This pucker enhances n→π* overlap of the amide oxygen and ester carbonyl carbon, which favors a trans amide bond. If there were no difference in n→π* interaction between the ring puckers, then the correlation between ring pucker and K(T/C) might be broken. To explore this possibility, proline conformations were constrained using a methylene bridge. We synthesized discrete gauche and anti 5-fluoro- and 5-hydroxy-N-acetylmethanoproline methyl esters from 3-syn and 3-anti fluoro- and hydroxymethanopyrrolidines using directed α-metalation to introduce the α-ester group. NBO calculations reveal minimal n→π* orbital interactions, so contributions from other forces might be of greater importance in determining K(T/C) for the methanoprolines. Consistent with this hypothesis, greater trans amide preferences were found in CDCl(3) for anti isomers en-MetFlp and en-MetHyp (72-78% trans) than for the syn stereoisomers ex-MetFlp and ex-MetHyp (54-67% trans). These, and other, K(T/C) results that we report here indicate how substituents on proline analogues can affect amide preferences by pathways other than ring puckering and n→π* overlap and suggest that caution should be exercised in assigning enhanced pyrrolidine C(γ)-exo ring puckering based solely on enhanced trans amide preference.     

Influences of the Hydrophobicity of the Heme-binding Pocket on the Properties and Functions of Cytochrome b_5 Mutants

IntroductionElectrontransferreactionsarethekeystepsinphoto synthesis ,respirationandmanyotherbiochemicalprocess es.1Cytochromeb5isaredoxproteinexistingwidelyinnature ,whichactsasanelectron carrierduringvariouselectrontransferprocessesinthebiologicalsystem .2Cytochromeb5isamembraneproteinwithmolecularweightofapproximately 16kDa ,ofwhichthehydrophobicC terminaldomainanchorscytochromeb5tothemem brane ,andthehydrophilicN terminaldomaincontainshemeprostheticgroupandexhibitsthebiologicalfunctionsof…     

Design, Synthesis and Investigation of Bone Affinity of the Conjugates of 5-Fluorouracil and Hydroxybisphosphonate

Bone tumor, as a common disease, is treated by surgical resection, radiotherapy and chemotherapy. Chemotherapy is one of the most important treatment, however, a major problem of chemotherapy is lack of selectivity of cytotoxic drugs. Although many attempts have been made to increase the selectivity of therapeutic drugs for the bone diseases, such as osteoporosis, paget’s, hypercalcemia and bone metastases by conjugating them with targeting carriers1-4, there are still no bone-targeting agent…     

A quantum chemical study of the infrared absorption intensities of the isoelectronic C2v systems H2F+, H2O and NH−2

The results of a comparative theoretical study of the dipole moment derivatives and infrared absorption intensities within the double harmonic approximation are presented for the isoelectronic, isostructural C_2v molecules: H₂F⁺, H₂O and NH⁻₂. The calculations, performed at the ab initio SCF and CI levels of theory, utilize basis sets of triple zeta+two polarization functions quality. For the ions H₂F⁺ and NH⁻₂, in the absence of adequate experimental data the equilibrium geometries and force constants were also calculated. The trends observed in the dipole moment derivatives for the three systems are indicative of the amount of electronic charge associated with the hydrogen atoms and are very similar to the trends noted for a set of C_3v hydrides.     

A quantum chemical study of the infrared absorption intensities of the isolectronic C3v systems NH3, H3O+ and CH−3

The dipole moment derivatives and the infrared absorption intensities for the isoelectronic, isostructural species NH₃, H₃O⁺ and CH⁻₃, calculated by ab initio quantum methods within the double harmonic approximation, are reported. The calculations were performed at the SCF, CI and CPA″ levels of theory using basis sets of triple zeta+two polarization functions quality. For the ions H₃O⁺ and CH⁻₃, in the absence of adequate experimental information, the calculations are fully ab initio, since the equilibrium geometries as well as the force constants had to be computed. The applicability of the harmonic treatment to systems with inversion potentials is discussed, especially with regard to H₃O⁺. The dipole moment derivatives of the three systems show interesting, regular trends in accordance with the amount of electronic charge associated with the hydrogen atoms.     

A CAS SCF CI study of the 1Σ+g and 3IIu states of the C2 molecule and the 4Σ−g and 2IIu states of the C+2 ion

Ab initio calculations of the X ¹Σ⁺_g and a ³II_u states of C₂ and the X⁴Σ⁻_g and a²II_u states of the C⁻₂ molecular ion are performed to determine the corresponding potential curves around the potential minima and at the dissociation limits. A large Gaussian basis set augmented by three d-type polarization functions on each carbon center is used to approximate the molecular orbits. The calculations are done at the complete-active-space SCF and multi-reference configuration interactions level. Spectroscopic constants and rotation—vibration energies are derived from the ab initio calculated potentials. Good agreement between theory and experiment is obtained for the X¹Σ⁺_g and a ³II_u states of C₂. In the earlier tentative assignment of the observed electronic transition around 2490 Å to the ²Σ⁻_g ← ²II_u system in C⁺₂, the lower state is confirmed by the present calculations to be C⁺ ₂ (²II_u).     

Functionalized 2-Substituted Allyl Bromides in the Barbier Allylation of (R)-2,3-O-Isopropylideneglyceraldehyde. Synthesis of the C8–C17, C8–C18, and C5–C17 Building Blocks of Laulimalides and Their Synthetic Analogs

Russian Journal of Organic Chemistry - Several new 2-substituted allyl bromides were synthesized through cyclopropanol intermediates and were then involved in the Barbier allylation of...     

Synthesis and Reactivity of the First Stable λ5-Phosphaacetylene

Abstract

The synthesis and reactivity of he P-bis(diisopropylamino) trimethylsilylphosphaacetylene (bp 75–80°C/10^?2) is reported. Addition of trimethylsilyltriflate to this compound leads to a stable methylenephosphonium salt which has been characterized by an X-ray diffraction study.     

Molecular, Thermodynamic, and Kinetic Parameters of the Free Radical C2H5 · in the Gas Phase

The wave function, energy, equilibrium geometry, and normal vibration frequencies of the ground state of the free radical C₂H₅ ^· were obtained by ab initio calculations with inclusion of electron correlation effects at the UB3LYP/6-311++G^{* *} level. The resulting molecular parameters were used to estimate the thermodynamic functions of an ideal gas of C₂H₅ ^·. From the thermodynamic functions of C₂H₅ ^·, I^·, C₂H₅I, C₂H₄, and HI and the kinetic curves of isothermal pyrolysis of ethyl iodide, the absolute rate constants of elementary reactions of free ethyl radical and the mentioned iodine compounds were estimated. The dissociation energy E _{D , 0}(C₂H₅-I) and the standard formation enthalpy _f H ⁰298 (C₂H₅ ^·) were found.     

Influences of the Hydrophobicity of the Heme－binding Pocket on the Properties and Functions of Cytochrome b5 Mutants

The mutation sites of the four mutants F35Y, P40V, V45E and V45Y of cytochrome b5 are located at the edge of the heme-binding pocket. The solvent accessible areas of the “pocket inte-rior“ of the four mutants and the wild-type cytochrome b5 have been calculated based on their crystal structures at high resolu-tion. The change in the hydrophobicity of the heme-binding pocket resulting from the mutation can be quantitatively de-scribed using the difference of the solvent accessible area of the “pocket interior“ of each mutant from that of the wild-type cy-tochrome b5. The influences of the hydrophobicity of the heme-binding pocket on the protein stability and redox potential are discussed.     

Gas-phase reactions between O−. and C6H5F: On the acidity of fluorobenzene and 1,4-difluorobenzene

The gas-phase reactions of negative ions (O^-., NH ₂ ^? , C₂H₅NH^?, (CH₃)₂N^?, C₆H ₅ ^t- , and CH₃SCH ₂ ^? ) with fluorobenzene and 1,4-difluorobenzene have been studied with Fourier transform ion cyclotron resonance mass spectrometry. The O^?. ion reacts predominantly by (1) proton abstraction, (2) formal H ₂ ^+. abstraction, and (3) attack on an unsubstituted carbon atom. In addition to these processes, attack on a fluorine bearing carbon atom yielding F^? and C₆H₄FO^? ions occurs with 1,4-difluorobenzene. Site-specific deuterium labeling reveals the occurrence of competing 1,2-, 1,3-, and 1,4-H ₂ ^+. abstractions in the reaction of O^?. with fluorobenzene. Attack of the O^?. ion on the 3- and 4-positions in fluorobenzene with formation of the 3- and 4-fluorophenoxide ions, respectively, is preferred to reaction at the 2-position, as indicated by the relative extent of loss of a hydrogen and a deuterium atom in the reactions with labeled fluorobenzenes. The NH ₂ ^? , C₂H₅NH^?, (CH₃)₂N^?, C₆H ₅ ^? , and CH₃SCH ₂ ^? anions react with fluoroberuene and 1,4-difluorobenzene only by proton abstraction. The relative importance of H⁺ and D⁺ abstraction in the reaction of these anions with labeled fluorobenzenes indicates that the 2-position in fluorobenzene is more acidic than the 3- and 4-positions, suggesting that the literature value of the gas-phase acidity of this compound (ΔH _acid ^o = 1620 ± 8 kJ mol^?1) refers to the former site. Based on the occurrence of reversible proton transfer between the CH₃O^? ion and 1,4-difluorobenzene, the ΔH _acid ^o of this compound is redetermined to be 1592 ± 8 kJ mol^?1.