红外光谱结构解析专家系统

本文报道一个可辅助化学家进行红外光谱结构解析的新的专家系统。它由5个基本部分组成:知识库、推理机、数据库、知识获取模块和解释模块。系统用TurboPROLOG人工智能语言实现。与其它光谱解析系统相比较,本系统具有下述特点:方便友好的用户界面,两种知识库管理手段,数种解释功能。可在IBMPC/XT及其兼容机上运行。系统的另一个重要特点是能模拟有经验的化学家解析光谱、推断完整分子结构的推理方法。     

Interpretation of analytical chemical information by pattern recognition methods-a survey

Since the late sixties, pattern recognition techniques have been used by analytical chemists to facilitate the interpretation of multivariate analytical information. Most research within the field has focused on adapting pattern recognition methods to chemical data. This has been necessary since chemical data are often complicated by the fact that distributions are unknown. Through the first decade of chemical pattern recognition, promising results have been obtained even though the data sets studied have frequently been rather small for statistical analysis. The past few years have shown that an increasing number of analytical chemists are interested in the sheer utility of pattern recognition. This can be taken as a valid sign of a useful approach. The present communication surveys this development. Those methods which have proved most useful for analytical chemical data are described in some detail, and applications within the various fields of analytical chemistry are reviewed.     

CAMAC-based instrumentation for a non-destructive neutron activation analysis system

The measuring system described in this paper, developed for non-destructive neutron activation analysis, consists of a semiconductor detector gamma-ray spectrometer and a sample changer coupled to a PDP-9 computer via a CAMAC interface system. CAMAC modules implemented in this system are an ADC interface, a sample changer control, display unit, a timer and a time-of-the-year clock. The spectra are accumulated in a section of the computer memory. The computer is further used for experiment control and for the analysis and interpretation of the measured gamma-ray spectra.     

Dynamic light scattering – an all-purpose guide for the supramolecular chemist

ABSTRACT

Dynamic light scattering (DLS) is a useful tool for the study of the solution-based behavior of colloids and molecular assemblies. The aim of this methods paper is to provide perspective on how this technique can be used by supramolecular chemists. As this technique is not extensively used within the field, we also provide a historical background of its development, summarize data interpretation and the strengths and limitations of the technique, and provide a perspective on some of the important features for supramolecular chemists that can be found in an instrument.     

Infrared spectra of surface hydroxyl groups and crystalline structure of oxides

An interpretation of the infrared spectra of surface hydroxyl groups based on crystal structure considerations has been suggested for a large number of oxides. The free hydroxyl groups proved to be of several distinct types, the number of which depends on the oxygen coordination in the bulk lattice. Such an approach gives an understanding of certain properties of surface hydroxyl species, and it can be used for the interpretation of spectra of some other functional groups.     

Improved DECRA processing of DOSY data: correcting for non-uniform field gradients

Mixture analysis using PFG-NMR (DOSY) data is, for many chemists, a valuable and increasingly popular technique where the NMR signals of different species are separated according to their diffusion coefficients. Where NMR signals overlap, however, it is often difficult to extract the spectra of pure components from experimental data. In such situations, it can often be helpful to use multivariate methods, which exploit all the available signal covariance, to resolve the spectra of the components of a mixture. The best-established and by some way the quickest such method, DECRA (Direct Exponential Curve Resolution Algorithm), unfortunately requires that data conform to a pure exponential decay as a function of gradient strength squared, while experimental data typically deviate significantly from this. If this deviation is known, the performance of DECRA can be greatly improved for components with similar diffusion coefficients by adjusting the choice of gradient strengths used.     

Descriptive,interactive computer-assisted interpretation of infrared spectra

A knowledge-based system for interpreting infrared spectra which explains the rationale behind the interpretation process, in a step-by-step fashion, has been developed. The user, having been informed of the basis for decisions made during interpretation of the data, is better able to understand, and thereby to utilize, the results. Additional features allow the informed user to participate in the interpretation of the spectral data, thereby increasing the quality and quantity of data available to the system. In addition to assisting researchers, this system can be used for computer- assisted instruction of the infrared spectral interpretation process.     

An empirical approach to the bond additivity model in quantitative interpretation of sum frequency generation vibrational spectra

Knowledge of the ratios between different polarizability betai'j'k' tensor elements of a chemical group in a molecule is crucial for quantitative interpretation and polarization analysis of its sum frequency generation vibrational spectroscopy (SFG-VS) spectrum at interface. The bond additivity model (BAM) or the hyperpolarizability derivative model along with experimentally obtained Raman depolarization ratios has been widely used to obtain such tensor ratios for the CH3, CH2, and CH groups. Successfully, such treatment can quantitatively reproduce the intensity polarization dependence in SFG-VS spectra for the symmetric (SS) and asymmetric (AS) stretching modes of CH3 and CH2 groups, respectively. However, the relative intensities between the SS and AS modes usually do not agree with each other within this model even for some of the simplest molecular systems, such as the air/methanol interface. This fact certainly has cast uncertainties on the effectiveness and conclusions based on the BAM. One of such examples is that the AS mode of CH3 group has never been observed in SFG-VS spectra from the air/methanol interface, while this AS mode is usually very strong for SFG-VS spectra from the air/ethanol interface, other short chain alcohol, as well as long chain surfactants. In order to answer these questions, an empirical approach from known Raman and IR spectra is used to make corrections to the BAM. With the corrected ratios between the betai'j'k' tensor elements of the SS and AS modes, all features in the SFG-VS spectra of the air/methanol and air/ethanol interfaces can be quantitatively interpreted. This empirical approach not only provides new understandings of the effectiveness and limitations of the bond additivity model but also provides a practical way for its application in SFG-VS studies of molecular interfaces.     

Pi-dimer of an aniline dimer: an ESR-UV-vis spectroelectrochemical study

It is shown for the first time that the most important intermediate formed during aniline polymerization, the p-aminodiphenylamine, forms a pi-dimer under oxidation at room temperature in acidified organic solvents that are used in electropolymerization. N-Phenylquinonediimine, which is generally assumed to be formed under oxidation, is only formed in basic solutions and in ionic liquids. Most of the mechanistic studies reported so far take the formation of N-phenylquinonediimine under consideration, although it is not consistent with the UV-vis spectra measured during oxidation of p-aminodiphenylamine. The formation of a pi-dimer is very well consistent with the electronic spectra of the oxidation product. In this way the pi-dimer is very important for the interpretation of the UV-vis spectra of higher oligomers and polyaniline as well. Furthermore, it offers a new interpretation of the redox behavior of p-aminodiphenylamine as found by cyclic voltammetry and has to be considered in the mechanism of the electrochemical polyaniline formation.     

石英晶体微天平的新进展

石英晶体微天平（quartz crystal microbalance,QCM）是一种对界面变化敏感的仪器,它已经在物理、化学、生物学、药物学、临床医学、环境科学等学科的界面问题研究中得到了一定的应用.然而,QCM在液相下的应用和推广一直受限于QCM数据定量解释的困难.为此,科研工作者发展了多种高级的QCM,比如带阻抗分析功能的QCM（impedance QCM,i-QCM）或带能量耗散监测功能的QCM（QCM with dissipation,QCM-D）,同时还发展了许多相应的理论模型.但是,对于多数生物、化学工作者来说,这些理论过于复杂.这极大地限制了QCM的推广和潜力发挥.本文以我们小组在QCM方面的研究工作为线索,对已报道的分析方法、模型和方程按5类应用条件进行了整理,给出了明确的界定标准：它们是：1,固-气界面;2,牛顿流体;3,固-液界面的薄膜;4,固-液界面厚膜;5,固-液界面超厚膜.对于每一类情况,我们将用通俗易懂的语言描述如何对QCM数据进行简化却又保证研究精度需要的定量分析.对于液态环境下的QCM数据的分析,我们着重介绍了＂固化水层＂模型,该模型允许QCM在一定的条件下成为一把＂分子尺＂,工作范围从几个纳米到数百纳米.该分子尺在多个创新界面问题研究中得到很好的应用.最后,我们从理论上分析了QCM作为生物传感器的先天缺陷--因基于面均质量检测的原理,QCM技术对溶液中蛋白的检测下限仅在1μg mL-1数量级.进一步,我们探索了QCM的发展方向和潜在应用领域,希望籍此能进一步推广QCM在各个学科界面问题中的研究应用.     

FTIR microscopy of biological cells and tissue: data analysis using resonant Mie scattering (RMieS) EMSC algorithm

Transmission and transflection infrared microscopy of biological cells and tissue suffer from significant baseline distortions due to scattering effects, predominantly resonant Mie scattering (RMieS). This scattering can also distort peak shapes and apparent peak positions making interpretation difficult and often unreliable. A correction algorithm, the resonant Mie scattering extended multiplicative signal correction (RMieS-EMSC), has been developed that can be used to remove these distortions. The correction algorithm has two key user defined parameters that influence the accuracy of the correction. The first is the number of iterations used to obtain the best outcome. The second is the choice of the initial reference spectrum required for the fitting procedure. The choice of these parameters influences computational time. This is not a major concern when correcting individual spectra or small data sets of a few hundred spectra but becomes much more significant when correcting spectra from infrared images obtained using large focal plane array detectors which may contain tens of thousands of spectra. In this paper we show that, classification of images from tissue can be achieved easily with a few (<10) iterations but a reliable interpretation of the biochemical differences between classes could require more iterations. Regarding the choice of reference spectrum, it is apparent that the more similar it is to the pure absorption spectrum of the sample, the fewer iterations required to obtain an accurate corrected spectrum. Importantly however, we show that using three different non-ideal reference spectra, the same unique correction solution can be obtained.     

Identification de composes inconnus en spectrometrie de masse par Comparaison a une Bibliotheque sur Cartouches Digitales

An automatic method for interpretation of mass spectra is described. This approach uses the comparison of unknown spectra with those included in a library of standard references. The spectra are stored on digital magnetic tape. Several hundred spectra can be recorded on a cartridge. The tape unit is connected to a minicomputer. This system offers many advantages and is very well suited for medium sized laboratories. The series of compounds studied are the olefins, compounds with very similar spectra, so the method of interpretation has to be powerful. The different parts of the identification algorithm are discussed. The results and experimentation are also presented.     

Extracting 2D IR frequency-frequency correlation functions from two component systems

The center line slope (CLS) method is often used to extract the frequency-frequency correlation function (FFCF) from 2D IR spectra to delineate dynamics and to identify homogeneous and inhomogeneous contributions to the absorption line shape of a system. While the CLS method is extremely efficient, quite accurate, and immune to many experimental artifacts, it has only been developed and properly applied to systems that have a single vibrational band, or to systems of two species that have spectrally resolved absorption bands. In many cases, the constituent spectra of multiple component systems overlap and cannot be distinguished from each other. This situation creates ambiguity when analyzing 2D IR spectra because dynamics for different species cannot be separated. Here a mathematical formulation is presented that extends the CLS method for a system consisting of two components (chemically distinct uncoupled oscillators). In a single component system, the CLS corresponds to the time-dependent portion of the normalized FFCF. This is not the case for a two component system, as a much more complicated expression arises. The CLS method yields a series of peak locations originating from slices taken through the 2D spectra. The slope through these peak locations yields the CLS value for the 2D spectra at a given T(w). We derive analytically that for two component systems, the peak location of the system can be decomposed into a weighted combination of the peak locations of the constituent spectra. The weighting depends upon the fractional contribution of each species at each wavelength and also on the vibrational lifetimes of both components. It is found that an unknown FFCF for one species can be determined as long as the peak locations (referred to as center line data) of one of the components are known, as well as the vibrational lifetimes, absorption spectra, and other spectral information for both components. This situation can arise when a second species is introduced into a well characterized single species system. An example is a system in which water exists in bulk form and also as water interacting with an interface. An algorithm is presented for back-calculating the unknown FFCF of the second component. The accuracy of the algorithm is tested with a variety of model cases in which all components are initially known. The algorithm successfully reproduces the FFCF for the second component within a reasonable degree of error.     

胶体与界面化学的研究进展

胶体与界面化学是研究胶体分散体系和界面现象的一门科学,在能源、材料、生物、化学制造和环境科学等领域具有广泛的应用。近年来,由于先进功能材料、仿生学和生物医药等学科的迅速发展,在纳米尺寸(胶体)的范围内进行分子组装和材料的制备已经引起了人们的高度关注。过去两年里,中国胶体与界面化学领域的科学家的创新性研究工作层出不穷,国际影响力日益提升,所获得的研究成果越来越受到国际同行的关注。这些成果可概括为:(1)系列新型有序分子组合体的构建及其在生物医药领域的应用,尤其是超分子组装、表面图案化有序组装材料的设计和应用;(2)胶体与界面化学方法在微纳米功能材料合成中的应用,包括形貌可控的无机材料、有机-无机复合功能材料、贵金属纳米材料以及小分子凝胶的合成及其应用;(3)胶体与界面化学在生物传感领域的新应用;(4)胶体与界面化学研究新方法。作为一门与实际应用密切结合的学科,现代经济社会为胶体与界面化学的发展提供了广阔的空间。可以预期,未来胶体与界面化学将更注重其基本的物理化学问题,如:新颖有序分子组合体的构建和理论认识;功能性微纳米材料界面结构与性能调控的理论指导。此外,新的手段和方法在胶体与界面体系的不断渗透,将不断产生新的学科交叉点,从而有力地促进胶体与界面化学的学科发展。共引用参考文献96篇。     

Intuitive patent Markush structure visualization tool for medicinal chemists

A Markush, or generic structure, is a widely used convention in chemical and pharmaceutical patents. The flexibility and complexity of this format, however, preclude an easy understanding and analysis of chemical space. In this paper, an application package called MarVis (Markush Visualization) is introduced to help chemists visualize Markush structures in chemical patents. MarVis can output a report with the Markush structure showing the query substructure and also an R-group table of all the possible R-groups described in the patent. MarVis also has a unique interactive interface that allows chemists to explore and zoom in the chemical space to find a subset of interest. SMILES, with minimal extensions, was used to facilitate a variety of patent Markush structure studies.     

Computer-aided Interpretation of Proton Nuclear Magnetic Resonance Spectra (Ⅰ)——An Artificial Intelligence System for Interpretation of Proton NMR Spectra of Polymers

An artificial intelligence system for interpretation of proton NMR spectra of polymers is reported in this paper. The system, including spectra data base, knowledge data base and reasoning engine, is based on the characteristics of the proton NMR spectra of polymers and the spectra interpretation experiences of specialist. The system can partly simulate human thinking and interpret proton NMR spectra of polymers at different levels of sophistication. The program in the system was written in Turbo Prolog 2.0 and translated into machine language by computer compiler. It has been tested on an IBM PC/XT computer and a satisfactory result was given.     

Consistency in the sum frequency generation intensity and phase vibrational spectra of the air/neat water interface

Substantial progress has been made in the quantitative understanding and interpretation of the hydrogen bonding and ordering structure of the air/water interface since the first sum-frequency generation vibrational spectroscopy (SFG-VS) measurement by Q. Du et al. in 1993 (Phys. Rev. Lett. 1993, 70, 2312-2316). However, there are still disagreements and controversies on the consistency between the different experimental measurements, as well as in the theoretical and computational results. One critical problem lies in the lack of consistency between the SFG-VS intensity measurements and the recently developed SFG-VS phase spectra measurements of the neat air/water interface, which has inspired various theoretical efforts. In this report, the reliability of the SFG-VS intensity spectra of the air/neat water interface is to be quantitatively examined, and possible sources of inaccuracies in the SFG-VS phase spectral measurement are to be discussed based on the nonresonant SHG phase measurements. Solid evidence is shown indicating that the SFG-VS intensity spectra from different laboratories are now quantitatively converging and in agreement with each other. However, the possible inaccuracies and inconsistencies in the SFG-VS phase spectra measurements need to be carefully examined against a properly corrected phase standard to take full advantage of this powerful experimental tool.     

Towards practical biocatalytic Baeyer-Villiger reactions: applying a thermostable enzyme in the gram-scale synthesis of optically-active lactones in a two-liquid-phase system

Baeyer-Villiger monooxygenases (BVMOs) are extremely promising catalysts useful for enantioselective oxidation reactions of ketones, but organic chemists have not used them widely due to several reasons. These include instability of the enzymes in the case of in vitro and even in vivo systems, reactant/product inhibition, problems with upscaling and the necessity of using specialized equipment. The present study shows that the thermally stable phenylacetone monooxygenase (PAMO) and recently engineered mutants can be used as a practical catalysts for enantioselective Baeyer-Villiger oxidations of several ketones on a preparative scale under in vitro conditions. For this purpose several parameters such as buffer composition, the nature of the solvent system and the co-factor regeneration system were optimized. Overall a fairly versatile and efficient catalytic system for enantioselective laboratory scale BV-oxidations of ketones was developed, which can easily be applied even by those organic chemists who are not well versed in the use of enzymes.