运用密度泛函活性理论的信息论方法研究苯并富烯衍生物的芳香性

文献中已有越来越多的芳香性体系被发现,同时也有越来越多的芳香性指标被提出来,但是如何解释芳香化合物稳定性的起源以及理解芳香性的本质仍然是当今理论化学中一个悬而未决的难题。运用我们新近提出的密度泛函活性理论信息论方法,不久前我们曾对一系列富烯衍生物进行了系统研究并得到了一个全新的认识。本文进一步探讨苯并富烯衍生物的芳香性行为,目的在于考察一个或多个苯环与富烯连接之后其芳香性发生变化的情况。运用香农熵,费舍尔信息,Ghosh-Berkowitz-Parr熵,Onicescu信息能,信息增益,以及相对Rényi熵六个信息量,和四种芳香指标,ASE,HOMA,FLU和NICS,我们系统地研究了信息量和芳香性指标在单、双、三苯并富烯衍生物中的相关性。我们发现,不管是否有苯环与富烯相连,芳香指标和信息量的交叉相关性都是一样的。这表明,虽然苯环本身具有芳香性,但苯环与富烯相连并不能改变富烯的芳香性与反芳香性本质。苯并富烯衍生物与富烯衍生物的芳香性和反芳香性一致。苯并富烯衍生物的芳香性和反芳香性完全取决于富烯本身的芳香性和反芳香性。这些结果为认识和理解复杂体系芳香性和反芳香性起源和本质将提供有益的启示。     

Synthesis and antitumor activity of benzimidazolyl-1,3,5-triazine and benzimidazolylpyrimidine derivatives

Triamino-substituted 1,3,5-triazine and pyrimidine derivatives were synthesized and tested for antitumor activities using some human cancer cell lines and murine leukemia cell lines. All the compounds having benzimidazolyl and morpholino groups as substituents on the 1,3,5-triazine ring showed antitumor activity. Pyrimidine derivatives having the same groups as substituents also showed antitumor activity. Among them, the compounds having 1-benzimidazolyl, morpholino and cis-2,3-dimethylmorpholino groups as substituents on the 1,3,5-triazine ring or pyrimidine ring exhibited the most potent antitumor activity, and these compounds exhibited no or very weak aromatase inhibitory activity. In contrast, the compounds having imidazolyl group instead of benzimidazolyl group as a substituent on the 1,3,5-triazine ring showed a potent aromatase inhibitory activity.     

Functionalization and kinetic stabilization of the [4]paracyclophane system and aromaticity of its extremely bent benzene ring

Kinetic stabilization of the [4]paracyclophane skeleton by the introduction of substituents, which serve to sterically hinder reactions at the reactive bridgehead sites, and properties of the resultant [4]paracyclophanes are investigated in this study. Modification of the property of [4]paracyclophane by functionalization is also intended. [4]Paracyclophanes are designed to be derived from the corresponding Dewar benzene isomers via their photochemical aromatization, and the requisite 1,4-bridged Dewar benzenes bearing sterically demanding functional groups are prepared. Irradiation of these precursors under matrix isolation at 77 K leads to the formation of [4]paracyclophanes, which exhibit characteristic electronic absorption spectra. The half-lives of the generated species vary widely from less than 1 min at -90 degrees C to 0.5 h at -20 degrees C, depending on the type of substituents and the pattern of substitution. One of the derivatives, 24, is stable enough and its content in the irradiated mixture is high enough to permit the measurement of the (1)H NMR spectrum. The recorded spectrum, which is reproduced very well by theoretical calculations using the GIAO method at the hybrid HF-DFT (B3LYP/6-31+G*) level, suggests the sustenance of rather strong diatropicity in its severely bent benzene moiety. Calculations on the bent benzene whose geometry is constrained to that calculated for 24 support that aromaticity is retained to a significant extent as compared to that of planar benzene, as judged by the magnetic criteria of aromaticity, that is, diamagnetic susceptibility exaltation and nucleus-independent chemical shift. The reason for the retention of aromaticity despite the severe bending of the benzene ring is discussed. Cyclophane 24 is so strained that it exceeds the corresponding Dewar benzene precursor in energy and thermally reverts to the latter with a half-life of 15 +/- 5 min at -20 degrees C (DeltaG++ = 18.3 +/- 0.3 kcal mol(-1)).     

Acyclic analogs of pyrimidine nucleosides. Synthesis of 1-(2-hydroxyethoxymethyl)- and 1-(4-hydroxybutyl)-5-amino derivatives of uracil

With the objective of discovering new antiviral agents based on acyclic analogs of pyrimidine nucleosides, we have synthesized 1-(2-hydroxyethoxymethyl)- and 1-(4-hydroxybutyl) derivatives of uracil having various aromatic and heterocyclic amino-containing substituents in the 5 position of the pyrimidine ring.Scientific-Research Institute of Pharmacology, Volgograd Medical Academy, Volgograd 400066, Russia. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 7, pp. 971–978, July, 1998.     

Current perspectives on quinazolines with potent biological activities: A review

Quinazoline is a heterocyclic compound having biological activities. It is aromatic in nature having bicyclic structure containing benzene ring and pyrimidine ring. Quinazoline and its derivatives are found to have wide range of biological activities that is anticancer, analgesic, antimicrobial, antihypertensive, anticonvulsant, antimalarial, antitumor, and anti-tubercular activities. The purpose of this review is to highlight the recent researches made by researchers on various biological activities of quinazoline derivatives on different targets.     

Novel phenoxyalkylamine derivatives. VII. Synthesis and pharmacological activities of 2-alkoxy-5-[(phenoxyalkylamino)alkyl]benzenesulfonamide derivatives.

To find a novel alpha-blocker with high alpha-blocking selectivity against dopamine D2-receptor affinity, we performed structural modification of the alkylene chains and the substituents on two benzene rings of 2-alkoxy-5-[(phenoxyalkylamino)alkyl]benzenesulfonamide derivatives. The modification of the alkylene chain between the amino moiety in the center of the molecule and the benzene ring (ring A) was found to be the most significant. 5-[2-[[2-(5-Fluoro-2-methoxyphenoxy)ethyl]amino]propyl]-2- methoxybenzenesulfonamide (II-4), which possesses 1-methylethyl as the alkylene chain, exhibited high alpha-blocking selectivity as well as potent alpha-blocking activity.     

Archimedean structure of the carbon cluster C12: Alternation of bond lengths and aromaticity

We consider the possibility that the stability of the Archimedean structure C₆₀ (a truncated icosahedron) is a consequence of the aromaticity of this nonalternant molecule. As the model, we used the structure of C₁₂ in the form of a truncated tetrahedron — the first of the Archimedean solids, having triangular faces in addition to hexagonal faces (rather than the pentagonal faces in the analogous C₆₀ molecule of symmetry I_h). On the basis of calculation of the topological resonance energy of the C₁₂ molecule of T_d symmetry, we conclude that the structure with different bond lengths is antiaromatic, while the C₁₂ molecule (whose hexagonal faces are benzene rings of the Kekulé type) has a slight degree of aromatic character. MNDO and AMl calculations have shown that these structures for C₁₂ correspond to minima on the potential energy surface, but the structure with different bond lengths has lower energy. We also observe an isomer of C₁₂ having benzene rings of the quinoid type, which corresponds to a minimum on the potential energy surface but is less stable than the structure with equal bonds. Aromatic stabilization is expected, as shown by the calculation for the tetracation C⁴⁺ ₁₂ of Td symmetry with virtually equal lengths of all the carbon-carbon bonds.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 26, No. 2, pp. 229–233, March–April, 1990.     

Correlated electron dynamics: how aromaticity can be controlled

In this Article, we show that the aromaticity of a molecule can be turned off by controlling the electron dynamics. We present a controlled switching from the aromatic ground state of benzene to two different nonaromatic states, using a laser pulse. The propagation of the molecular wave function is carried out with the time-dependent configuration interaction method. The laser pulse for switching between the ground and excited states is optimized using optimal control theory. Bond orders and Mulliken charges serve as an aromaticity criterion. The nonaromatic target states exhibit localized bonds and partial charges on the carbon atoms; these localized electrons circulate on an attosecond time scale in the ring system.     

Aromaticity changes along the reaction coordinate connecting the cyclobutadiene dimer to cubane and the benzene dimer to hexaprismane

Aromaticity and reactivity are two deeply connected concepts. Most of the thermally allowed cycloadditions take place through aromatic transition states, while transition states of thermally forbidden reactions are usually less aromatic, if at all. In this work, we perform a numerical experiment to discuss the change of aromaticity that occurs along the reaction paths that connect two antiaromatic units of cyclobutadiene to form cubane and two aromatic rings of benzene to yield hexaprismane. It is found that the aromaticity profile along the reaction coordinate of the [4+4] cycloaddition of two antiaromatic cyclobutadiene molecules goes through an aromatic highest energy point and finishes to an antiaromatic cubane species. Up to our knowledge, this represents the first example of a theoretically and thermally forbidden reaction path that goes through an intermediate aromatic region. In contrast, the aromaticity profile in the [6+6] cycloaddition of two aromatic benzene rings show a slow steady decrease of aromaticity from reactants to the highest energy point and from this to the final hexaprismane molecule a plunge of aromaticity is observed. In both systems, the main change of aromaticity occurs abruptly near the highest energy point, when the distance between the centers of the two rings is about 2.2 Å.     

A DFT study on the magnetostructural property of ferromagnetic heteroverdazyl diradicals with phenylene coupler

We have theoretically designed five different m-phenylene coupled high-spin bis-heteroverdazyl diradicals and their analogous p-phenylene coupled low-spin positional isomers. The geometry-based aromaticity index, harmonic oscillator model of aromaticity (HOMA) values for both the couplers (local HOMA), and the whole diradicals (global HOMA) have been calculated for all the diradicals. We also qualitatively relate these HOMA values with the intramolecular magnetic exchange coupling constants (J), calculated using a broken symmetry approach within unrestricted density functional theory framework. Structural aromaticity index HOMA of linkage specific benzene rings in our designed diradical systems shows that the aromatic character depends on the planarity of the molecule and it controls the sign and magnitude of J. The predicted J values are explained on the basis of spin polarization maps, average dihedral angles, and magnetic orbitals. The effect of the spin leakage phenomenon on magnetic exchange coupling constant and that on HOMA values of certain phosphaverdazyl systems has been explicitly discussed. In addition, a similar comparison is made between the calculated exchange coupling constants and corresponding HOMA values. The main novelty of this work stands on the consideration of the aromatic behavior by means of the geometrical index HOMA. We also estimate another aromaticity index, nucleus independent chemical shift (NICS) values for the phenylene coupler in each diradical to measure aromaticity and compare its value with that of HOMA. The ground state stabilities of these diradicals have also been compared.     

Novel Uracil-Based Inhibitors of Acetylcholinesterase with Potency for Treating Memory Impairment in an Animal Model of Alzheimer’s Disease

Novel derivatives based on 6-methyluracil and condensed uracil, 2,4-quinazoline-2,4-dione, were synthesized with terminal meta- and para-benzoate moieties in polymethylene chains at the N atoms of the pyrimidine ring. In the synthesized compounds, the polymethylene chains were varied from having tris- to hexamethylene chains and quaternary ammonium groups; varying substituents (ester, salt, acid) at benzene ring were introduced into the chains and benzoate moieties. In vivo biological experiments demonstrated the potency of these compounds in decreasing the number of β-amyloid plaques and their suitability for the treatment of memory impairment in a transgenic model of Alzheimer’s disease.     

Structure-property relationships in molecular wires

Molecular electrical conductivities between gold electrodes have been measured at the single molecule level through a variety of systems. The results show that the aromaticity of molecules is partly disrupted by passage of electricity, leading to increased resistance. The possibility of the opposite effect resulting from the disruption of antiaromaticity was explored in biphenylene derivatives. When gold atoms terminate benzene or polymethylene molecules they incorporate into the electrodes, greatly diminishing the resistance from other terminating atoms. In paracyclophanes with two, three, and four benzenes in stacks the gold electrodes can directly contact them, and thus measure conductivity directly through the stacks.     

Aromaticity and stability going in opposite directions: An energetic,structural, magnetic and electronic study of aminopyrimidines

The relation between molecular energetics and aromaticity was investigated for the interaction between the amino functional group and the nitrogen atoms of the pyridine and pyrimidine rings, using experimental thermodynamic techniques and computational geometries, enthalpies, chemical shifts, atomic charges and the Quantum Theory of Atoms in Molecules. 2,4-diaminopyrimidine and 2,4,6-triaminopyrimidine were studied by static bomb combustion calorimetry and Knudsen effusion technique. The derived gaseous-phase enthalpies of formation together with the enthalpies of formation of the three isomers of aminopyridine reported in the literature, were compared with the calculated computationally ones and extended to other diamino- and triaminopyrimidine isomers using the MP2/6-311++G(d,p) level of theory.The results were analyzed in terms of enthalpy of interaction between substituents and, due to the absence of meaningful stereochemical hindrance, strong inductive effects, or intramolecular hydrogen bonds according to QTAIM results, the resonance electron delocalization plays an almost exclusive role in the very exothermic enthalpies obtained. Therefore, this enthalpy of interaction was used as an experimental energetic measure of resonance effects and analyzed in terms of aromaticity. It was found that more conjugation between substituents means less aromaticity according to the magnetic (NICS) and electronic (Shannon) criteria, but more aromaticity according to the geometric (HOMA) criterion.     

Retention Behavior of Nucleic Acid Bases and Purine Derivatives on Titania

The retention of nucleic acid bases and purine derivatives on titania was studied using a 0.4 mM acetic acid–sodium acetate buffer (pH 6.0) and 70% aqueous methanol as mobile phases. We observed that the retention strength of tested analytes on titania was dependent on the structural differences between pyrimidine and purine skeletons and the variety and number of substituents. The retention order was purine derivatives with methyl groups, pyrimidine bases and purine derivatives with hydrophilic functional groups, which were retained most strongly on titania. We concluded that the retention of each analyte was caused by the analyte’s hydrophobicity in the case of purine derivatives with methyl groups and pyrimidine bases. In the case of purine and its derivatives with hydrophilic functional groups, it was considered that the retention was dependent on the analyte’s ability to form chelates, and the variety and number of functional groups on C6 and C2.     

Synthesis of novel push-pull unsymmetrically substituted alkynyl phthalocyanines

Two families of "push-pull" phthalocyanines 1-3 having an unusually strong dipole moment have been prepared. The syntheses of unsymmetrically substituted phthalocyanines 1a,b and 2 bearing one or two electron-withdrawing 4-nitrophenylethynyl moieties, respectively, and six alkoxy substituents were performed by combination of a zinc or nickel templated cyclotetramerization and cross-coupling palladium mediated methodologies. In a similar way, the "push-pull" compounds 3a,b having a reversal substitution pattern, characterized by the presence of one electron-donor 4-(dimethylamino)phenylethynyl unit and six strong acceptor alkylsulfonyl substituents were prepared. The compounds show very large second-order nonlinear optical responses.