Study on the interactions of chlorpromazine hydrochloride and promethazine hydrochloride with nucleic acids by resonance Rayleigh scattering spectrum

The interaction between nucleic acids and medicine molecule is one of the important research fields of nucleic acids, which is very valuable for investigating the interactive mechanisms of anti-cancer and anti-virus medicine, screening medicine in vitro, …     

Measurement uncertainty in analytical methods in which trueness is assessed from recovery assays

We propose a new procedure for estimating the uncertainty in quantitative routine analysis. This procedure uses the information generated when the trueness of the analytical method is assessed from recovery assays. In this paper, we assess trueness by estimating proportional bias (in terms of recovery) and constant bias separately. The advantage of the procedure is that little extra work needs to be done to estimate the measurement uncertainty associated to routine samples. This uncertainty is considered to be correct whenever the samples used in the recovery assays are representative of the future routine samples (in terms of matrix and analyte concentration). Moreover, these samples should be analysed by varying all the factors that can affect the analytical method. If they are analysed in this fashion, the precision estimates generated in the recovery assays take into account the variability of the routine samples and also all the sources of variability of the analytical method. Other terms related to the sample heterogeneity, sample pretreatments or factors not representatively varied in the recovery assays should only be subsequently included when necessary. The ideas presented are applied to calculate the uncertainty of results obtained when analysing sulphides in wine by HS-SPME-GC.     

Comparison of quantitative methods for analysis of resinic acids in crude Tall-Oil

Currently used analytical methods to quantify resinic acids in crude Tall-Oil (ASTM D 803 and SCAN T 14), have been reviewed and their accuracy and precision ascertained with different samples containing from 30 to 80% of resinic acids. A new method for quantification of resinic acids in crude Tall-Oil samples, using a gas chromatographic method was compared with the standard methods. It provides the same level of precision and accuracy, is much faster and requires smaller samples. Dibuthylphthalate was tested, with good results, as an internal standard.     

Chemiluminescence-based detection technologies for biomolecules, mainly in gel electrophoresis

We provide an overview of powerful applications of chemiluminescence (CL) analysis for biomolecules, mainly in gel electrophoresis. In routine immunoassays, CL labels and detection reactions are widely used for peroxidase and alkaline-phosphatase enzymes. The sensitivity, the dynamic range and the diversity of CL assays have led to a vast range of applications, notably in protein and nucleic-acid blotting. Non-enzymatic CL detection is also being developed gradually.Direct CL detection of biomolecules in gels has emerged recently, with simple, convenient and rapid methods. It offers substantial potential to detect many proteins or nucleic acids in complex biological samples. In addition, metallic nanoparticles and catalytic nucleic acids are also potential candidates for CL detection of biomolecules in the future.     

Single-laboratory validation of a refined AOAC HPLC method 2005.06 for oysters, cockles, and clams in U.K. shellfish

In 2009, a refined HPLC method based on AOAC Official Method 2005.06 was developed and validated for the determination of paralytic shellfish poisoning (PSP) in mussels. A single-laboratory validation study of this method was undertaken here for the analysis of PSP toxins in oysters, cockles, clams, and razor clams. The method was characterized for selectivity, sensitivity, linearity, precision, repeatability, recovery, ruggedness, and uncertainty of measurement. Validation data were utilized to determine method performance characteristics for non-mussel bivalves for all commercially available certified reference toxins, extending the method to dcNEO and dcGTX2,3, where available. A period of parallel testing of oysters, cockles, and clams enabled a comparison of sample toxicities obtained using mouse bioassay (MBA) and HPLC methodologies, although only a very low number of PSP-positive samples were obtained through the United Kingdom official control monitoring program. Results from the MBA and HPLC methods were well-correlated for PSP-negative samples, but the low number of naturally contaminated PSP-positive samples has prevented any comparative statistical assessment of method performance for non-mussels between the two official methods. However, some evidence for potentially significant differences in total saxitoxin equivalents obtained by the two methods in some species has highlighted the need for further comparative testing in non-mussel samples to be conducted prior to implementation of the HPLC method in routine official control monitoring programs.     

SPE-GC-MS for the Determination of Halogenated Acetic Acids in Drinking Water

The development and optimization of analytical methods for the better monitoring of disinfection by-products especially haloacetic acids in water are key step in order to estimate human exposure to such products after chlorination. A reliable and accurate analytical method is needed in order to reach the levels of concentration required by United States Environmental Protection Agency regulations. In this study a method was developed for determining halogenated acetic acids in drinking water, involving solid phase extraction, methylation derivatization, and GC-MS. The new SPE-GC-MS-SIM method is capable of analyzing all nine acids at extremely low μg L^–1 level. Run time is significantly reduced without compromising analytical results. The major advantages of the method are the simplicity of the chromatography, short run time and low detection limits. The method performance, limits of detection and spiking recovery were evaluated and the results proved that the accuracy and precision were good. This method outperforms previous GC-MS methods especially for the determination of dibromoacetic, dibromochloroacetic, dichlorobromoacetic and tribromoacetic acids. The method has been used to analyse domestic tap water and water samples collected at a local water treatment plant.     

Electrospray ionization mass spectrometric analysis of nucleic acids using high-throughput on-line desalting

A rapid on-line desalting method utilizing ion-pair reversed-phase high-performance liquid chromatography (IP-RP-HPLC) was employed in tandem with negative electrospray ionization mass spectrometry (ESI-MS) for the routine analysis of nucleic acids. Desalting was performed on a short 10 x 2.1 mm guard column packed with 3.5 microm C(18) sorbent. The HPLC system was connected in-line to an orthogonal ESI-TOF mass spectrometer via a six-port, two-position switching valve, allowing desalting followed by mass analysis of nucleic acids. Duty cycle times for the method were as low as 1.5 min per sample. This allowed for the analysis of approximately 950 samples per 24-h time period, which is suitable for medium- to high-throughput applications. Average mass accuracy was determined to be 80 ppm for oligonucleotides up to 110 mer in length with external calibration. The method was utilized for synthetic oligonucleotide quality control and analysis of DNA genotyping fragments.     

功能化核酸适体的筛选及分子识别应用

核酸适体是从寡核苷酸文库中筛选获得的一段单链寡核苷酸. 由于能与多种靶标分子高特异性结合, 核酸适体已发展成为一种新兴的分子识别工具, 广泛应用于生物医学等领域. 天然核酸文库有限的化学组成限制了核酸适体的结构和功能, 进而限制了其在分子识别中的应用. 功能化核酸适体通过引入特定的化学官能团使核酸序列具有更丰富的构象和功能, 增强其分子识别能力. 然而, 功能化核酸很难与核酸扩增方法兼容, 因而难以使用传统筛选方法进行功能化核酸的筛选. 因此, 优化筛选方法对于获得具有优异性能的功能化核酸适体至关重要. 本综述总结了功能化核酸适体的筛选方法, 并介绍了其作为分子识别工具在生物医学领域中的应用.     

Interactions of Night Blue with Nucleic Acids and Determination of Nucleic Acids Using Resonance Light Scattering Technique

The noncovalent interactions of night blue (NB) with several nucleic acids in buffer medium of Britton‐Robinson at pH 4.1 have been studied by spectroscopic methods. It is shown that the binding of NB with nucleic acids involves the J‐aggregation of NB molecules on the surface of nucleic acids. The aggregation was encouraged by polyanions nucleic acids, in which nucleic acids served for acting templates. In this connection, a new method of nucleic acids with sensitivity at nanogram level is proposed based on the measurement of enhanced resonance light scattering (RLS). The linear range of ctDNA, fsDNA and yRNA is 0.01—2.5, 0.03—2.5 and 0.04—1.0 μg/mL, respectively, and the corresponding detection limits (3s?) are 9.4, 7.3 and 5.7 ng/mL at 2.5 × 10–⁵mol/L of NB. Synthetic and real samples were analyzed with satisfactory results.     

SPE-GC-MS for the Determination of Halogenated Acetic Acids in Drinking Water

The development and optimization of analytical methods for the better monitoring of disinfection by-products especially haloacetic acids in water are key step in order to estimate human exposure to such products after chlorination. A reliable and accurate analytical method is needed in order to reach the levels of concentration required by United States Environmental Protection Agency regulations. In this study a method was developed for determining halogenated acetic acids in drinking water, involving solid phase extraction, methylation derivatization, and GC-MS. The new SPE-GC-MS-SIM method is capable of analyzing all nine acids at extremely low μg L^–1 level. Run time is significantly reduced without compromising analytical results. The major advantages of the method are the simplicity of the chromatography, short run time and low detection limits. The method performance, limits of detection and spiking recovery were evaluated and the results proved that the accuracy and precision were good. This method outperforms previous GC-MS methods especially for the determination of dibromoacetic, dibromochloroacetic, dichlorobromoacetic and tribromoacetic acids. The method has been used to analyse domestic tap water and water samples collected at a local water treatment plant.

     

Rapid and Nondestructive Analysis of Bacillus Calmette–Guerin Polysaccharide Nucleic Acid Injection by near-Infrared Spectroscopy with Chemometrics

A novel quantitative analytical method using near-infrared (NIR) spectroscopy combined with chemometrics has been developed to determine the polysaccharides and nucleic acids for routine quality analysis of Bacillus Calmette–Guerin polysaccharide and nucleic acid injections. A Monte-Carlo method was used to detect and discard outliers and to improve the predictive ability of the model. Various other spectral preprocessing methods such as smoothing, derivative, multiplicative scattering correction, standard normal variables, and orthogonal signal correction methods were used to remove noise and other irrelevant information from the spectra. Sample-set partitioning based on joint x–y distance method was utilized to divide the sample measurements into calibration and validation datasets. The optimal wavelength variables were determined by competitive adaptive weighted sampling. The model was established and cross-validated using partial least square regression. The root mean square errors of cross-validation for polysaccharides and nucleic acids were determined to be 0.0382 and 5.218, and the root mean square errors of prediction were 0.0229 and 6.282. The overall results show that NIR spectroscopy combined with chemometry is effective for the quantitative analysis of Bacillus Calmette–Guerin polysaccharide and nucleic acid injections.     

Single-Crystal X-Ray Diffraction Studies of Oligonucleotides and Oligonucleotide–Drug Complexes

Nucleic acids constitute the library of genetic information for all living organisms. They also play a regulatory role in many biological events concerned with the utilization of genetic information. The double-helical model of DNA, proposed by Watson and Crick in 1953, suggested the structural basis for its biological role, but this insight into nucleic acid structures seems to have generated as many questions as it has provided answers. Experimental studies, in particular fiber diffraction work, yielded a wealth of information on the conformational flexibility of nucleic acids and on the importance of interactions with water and cations. Major advances in synthetic organic chemistry, with implications for molecular biology, propelled nucleic acid research forward in the late 1970s. The availability of milligram quantities of synthetic oligonucleotides of defined sequence and high purity paved the way for detailed and accurate structural analysis using single-crystal X-ray diffraction methods and, in more recent times, NMR spectroscopy. This article is a detailed survey of the structural results generated by crystallographic techniques as applied to DNA, RNA, and nucleic acid–drug complexes over the period 1979–1990. The appendix lists important definitions used in the characterization of oligonucleotide structures.     

Accreditation of GMO detection laboratories: Improving the reliability of GMO detection

Reliable and efficient methods for detecting genetically modified organisms (GMOs) are essential for establishing an effective system for traceability all along the supply chain from seed producers to final consumers. The latter is especially meaningful in European Union and other countries where strict legislations on GMOs were set up. Performance of the methods used in laboratories around the world should be uniform, in order to obtain reliable and comparable results. Accreditation is a suitable system for harmonising procedures in each testing laboratory. In this paper, key elements for the accreditation of molecular biology methods for GMO detection according to ISO/IEC 17025 are described. The procedures described are also valuable for the accreditation of molecular methods for all laboratory diagnostics where qualitative and quantitative characterisation of nucleic acids is needed.     

Probing cell proliferation in the human colon using vibrational spectroscopy: a novel use of FTIR-microspectroscopy

Recently, Fourier transform infrared (FTIR)-spectroscopy has been used to monitor cell growth by several works. Conventionally, the study of cell and tissue dynamics at molecular levels is carried out through various approaches like histochemical methods, application of molecular biology and immunology. Colonic crypts display a pattern in cell growth along their height. Histologically normal sections obtained from formalin fixed biopsies of colon cancer patients were studied in the present work through vibrational spectroscopy. The evolution and development of the normal human colonic crypts manifested in Fourier transform infrared-microspectroscopy (FTIR-MSP) as spectral changes in the levels of nucleic acids, proteins, carbohydrates and lipids. The results indicate that the level of carbohydrates, nucleic acids and lipids increases only till the middle of the crypt up to which the maturation zone is restricted and thereafter decreases till the top where the cells are exfoliated. These observations are in coherence with earlier reports on crypt proliferation. We identify the normal pattern of various biochemicals along the colonic crypt based on data analyzed from FTIR-MSP. This study affords an important example of the application of microscopic vibrational spectroscopy for understanding basic cell processes from formalin fixed tissues where in vivo studies and immunological methods are not feasible.     

基于核酸分子识别的电化学分析方法与应用

核酸作为生物体遗传信息的载体以及分子生物学和生物分析化学中重要的功能分子,近年来在电化学分析中受到了越来越多的重视。本文以作者所在研究组的工作为实例,对核酸分子识别的电化学分析方法作出简要的评述,内容涉及核酸序列和基因变异的电化学分析以及核酸作为功能分子进行识别检测的电化学分析等等。     

Single-stranded DNA (ssDNA) production in DNA aptamer generation

The discovery that synthetic short chain nucleic acids are capable of selective binding to biological targets has made them to be widely used as molecular recognition elements. These nucleic acids, called aptamers, are comprised of two types, DNA and RNA aptamers, where the DNA aptamer is preferred over the latter due to its stability, making it widely used in a number of applications. However, the success of the DNA selection process through Systematic Evolution of Ligands by Exponential Enrichment (SELEX) experiments is very much dependent on its most critical step, which is the conversion of the dsDNA to ssDNA. There is a plethora of methods available in generating ssDNA from the corresponding dsDNA. These include asymmetric PCR, biotin-streptavidin separation, lambda exonuclease digestion and size separation on denaturing-urea PAGE. Herein, different methods of ssDNA generation following the PCR amplification step in SELEX are reviewed.     

某些分子光谱分析法测定核酸的进展

对近年来利用分光光度法、荧光法和共振光散射法定量测定核酸的现状进行了评述，表中列出了重要的反应体系及分析特征，引用文献77篇。