Spectroscopic and quantum chemical study of the properties and structure of 5-hydroxy-benzimidazole

The MNDO method has been used to calculate the heats of formation of six tautomeric forms of 5-hydroxybenzimidazole (1), their anionic and cationic forms, as well as the energetic, electronic, and structural characteristics of neutral, protonated, and deprotonated tautomers. According to the IR spectra,1 exists in the crystalline state and in CCl₄ and acetonitrile solution in the hydroxy form as two tautomers. A significant difference has been shown to exists in the EAS in acidic media of benzimidazoles, containing a benzene ring in the C² position, as compared with the spectra of benzimidazoles with alkyl substituents in this position. Spectral characteristics are given which can be used to distinguish the mono- and dianionic forms of derivatives of1.N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, 117977 Moscow. P. Lumumba University of the Brotherhood of Nations, 117198 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 7, pp. 1557–1565, July, 1992.     

Spectroscopic and quantum chemical study of the novel compound cyclopropylmethylselenol

An investigation into the properties of the novel compound cyclopropylmethylselenol has been undertaken by use of Stark-modulation microwave spectroscopy and high-level quantum chemical calculations. Ground-state spectra belonging to six isotopomers of a single conformer of the molecule were recorded and assigned. This conformer, predicted to be the lowest in energy by a series of quantum chemical calculations, possesses a synclinal arrangement of the H-C-C-Se atoms. In addition to the assignment of these ground-state spectra, transitions attributable to vibrationally excited states of the 78Se- and 80Se-containing isotopomers were identified. A tentative assignment of these excited-state spectra to specific vibrational modes has been made with the assistance of a density functional theory calculation at the B3LYP/6-311++G(3df,2pd) level of theory. Close agreement was found between experimental ground-state rotational constants and ab initio equilibrium values calculated at the MP2/aug-cc-pVTZ level of theory. Good agreement was also noted between certain r(s) principal axis coordinates of atoms in the molecule and the corresponding ab initio r(e) values. Limited evidence in favor of the formation of a weak intramolecular hydrogen bond between the H atom of the selenol group and electron density associated with the cyclopropyl ring is discussed.     

Spectroscopic and quantum chemical studies on 4-acryloyl morpholine

Fourier transform infrared (FTIR) and FT-Raman spectra have been recorded and an extensive spectroscopic investigations have been carried out on 4-acryloyl morpholine (4AM). Theoretical quantum chemical studies have also been performed. From the ab initio and DFT analysis using HF, B3LYP and B3PW91 methods with 6-31G(d,p) and 6-311G++(d,p) basis sets the energies, structural, thermodynamical and vibrational characteristics of the compound were determined. The energy difference between the chair equatorial and chair axial conformers of 4AM have been calculated by density functional theory (DFT) method. The optimized geometrical parameters, theoretical wavenumbers and thermodynamic properties of the molecule are compared with the experimental values. The effect of acryloyl group on the characteristic frequencies of the morpholine ring has been analysed. The mixing of the fundamental modes with the help of potential energy distribution (PED) through normal co-ordinate analysis has been discussed.     

Electron diffraction and quantum chemical study of the molecular structure of 4-methylbenzene sulfochloride

A combined electron diffraction and mass spectrometric study was carried out to investigate the molecular structure of 4-methylbenzene sulfochloride at 330(2) K. An analysis of the electron diffraction data was performed in terms of the r_α structure. Several models of geometrical structure having different orientations of the sulfochloride group relative to the plane of the benzene ring are treated. The following values of structural parameters were obtained: r_α(C-H)_meth= 1.104(41)Å, r_a(C-H)/_phen = 1.103(27)Å, r_a(C-C)_phen = 1.403(7) Å, r_a(C-C)_meth = 1.512(25) Å, r_a(C-S) =1.758(6) Å, r_a(S = O) = 1.419(3) Å,r _a(S-Cl) = 2.049(5) Å, ∠CCH_meth = 106.9(47)?, ∠CSO = 110.5(6)?, ∠CSCl = 101.3(6)°, ∠OSO = 120.5(9)°. The angle between the plane of the benzene ring and the plane of the S-Cl bond was found to be 83°. Ab initio and semiempirical quantum chemical calculations were accomplished to estimate the geometrical and energy parameters and compare them with electron diffraction data.     

Spectroscopic study on chemical structure of plasma-polymerized hexamethyldisiloxane

A plasma-polymerized material was produced from hexamethyldisiloxane vapor by a glow discharge polymerization technique. Spectroscopic interpretation of the chemical structure of the polymerized hexamethyldisiloxane was studied by spectroscopic means such as IR, XPS, and NMR. The plasma polymer was barely soluble in the usual organic solvents, although it contained a small amount of the monomer and its oligomers. The IR spectrum indicated that the polymer consisted of Si? CH₃, Si? O, Si? CH₂, and Si? H groups. The surface of the polymer was found to retain structural units similar to the monomer from the XPS measurement. On the other hand, the ¹³C and ²⁹Si high-resolution, solid-state NMR measurements revealed that the plasma polymer was highly crosslinked with a variety of conformations and a number of O atoms surrounding a Si atom. Results from the XPS and NMR spectra suggested that the bulk of the polymer was more oxidized than the surface layer; Si atom was preferentially oxidized. A hypothetical chemical structure was proposed for the polymerized hexamethyl-disiloxane.     

Spectroscopic and quantum chemical studies of isocytosine

The methods of electronic and vibrational (IR) spectroscopy were used to study the spectral properties of isocytosine in H₂O, D₂O, chloroform, and hexane in a wide concentration interval. Quantum chemical calculations of tautomeric forms and dimers of isocytosine were carried out. The bands of the calculated and experimental spectra were assigned. The results of the quantum calculations were compared with the experimental data. The spectral bands were classified according to the type of tautomer or dimer to which they belong.Translated from Teoreticheskaya i éksperimental'naya Khimiya, Vol. 24, No. 1, pp. 29–36, January–February, 1988.The authors are grateful to I. M. Ginzberg and L. F. Strelkova for their participation in the discussion of the infrared spectroscopy results.     

Spectroscopic and quantum chemical studies on the structure of 2-arylquinoline-4(1H)-thione derivatives

The geometries of the title compounds were probed in solution, solid and gas states using spectroscopic methods, X-ray crystallography and quantum chemical techniques. The exclusive existence of the NH-4-thiones in solution (NMR and PCM-B3LYP(MP2)/6-31+G(d) calculations) and solid state (FT-IR and X-ray) is also corroborated by comparison of their spectroscopic data with those of the corresponding 2-aryl-1-methylquinoline-4(1H)-thione derivatives. The co-existence of the quinoline-4-thione and quinoline-4-thiol (4-mercaptoquinoline) isomers in the gas phase is confirmed by mass spectrometry and the preponderance of the 4-thiol is supported by quantum chemical techniques (PM3, MP2 and B3LYP).     

Vibrational frequencies and structure of B4Cl4: an ab intio quantum chemical study

The normal mode frequencies and corresponding vibrational assignments of B4Cl4 are examined theoretically using the Gaussian 98 set of quantum chemistry codes. All normal modes were successfully assigned to one of three types of motion predicted by a group theoretical analysis (B-B stretch, B-Cl stretch, B-Cl bend) utilizing the Td symmetry of the molecule. The vibrational modes of the naturally isotopically substituted (1-(10)B, 2-(10)B, 3-(10)B and 4-(10)B) forms of B4Cl4 were also calculated and compared against experimental data. A complex pattern of frequency shifts and splittings is revealed.     

Gas-phase electron diffraction and quantum chemical study of the structure of the 4-nitrobenzene sulfonyl chloride molecule

A combined gas-phase electron diffraction and quantum chemical (B3LYP/6-311+G**, B3LYP/cc-pVTZ, MP2/6-31G*, and MP2/cc-pVTZ) study of the structure of the 4-nitrobenzene sulfonyl chloride molecule is performed. It is found that at a temperature of 391(3) K only one conformer with C _s symmetry is present in the gas phase. The following experimental values of structural parameters are obtained: r _h1(C-H)_av = 1.086(6) Å, r _h1(C-C)_av = 1.395(3) Å, r _h1(C1-S) = 1.773(4) Å, r _h1(S=O) = 1.423(3) Å, r _h1(S-Cl) = 2.048(4) Å, r _h1(N-O) = 1.224(3) Å, r _h1(N-C4) = 1.477(3) Å, ∠(C1-S=O) = 109.0(4)°, ∠(Cl-S-O) = 106.7(2)°, ∠C1-S-Cl = 100.2(13)°, ∠O=S=O = 122.9(11)°, ∠O=N=O = 123.6(5)°. The C2-C1-S-Cl torsion angle that characterizes the position of the S-Cl bond relative to the benzene ring plane is 89(4)°. The NO₂ group lies in the benzene ring plane. Internal rotation barriers calculated by B3LYP/6-311+G** and MP2/6-31G* methods are: V ₁ = 4.7 kcal/mol and 5.3 kcal/mol for the sulfonyl chloride group; V ₂ = 4.9 kcal/mol and 6.0 kcal/mol for the nitro group.     

Spectroscopic and quantum chemical study of cyclopropylmethylphosphine, a candidate for intramolecular hydrogen bonding

The properties of the novel compound cyclopropylmethylphosphine (C3H5CH2PH2) have been investigated by means of Stark-modulation microwave spectroscopy and high-level quantum chemical calculations. Spectra attributable to the three conformers of the molecule with a synclinal arrangement of the H-C-C-P atoms were recorded and assigned. The experimental rotational constants obtained for these conformers were found to be in good agreement with those generated by ab initio geometry optimizations at the MP2/aug-cc-pVTZ level of theory. An estimate of the relative energies of the three conformers with observable spectra, by means of relative intensity measurements, compared favorably with the results of G3 energy calculations performed for the molecule. In addition to the observation of ground-state rotational spectra for three conformers, spectra belonging to a number of vibrationally excited states were also assigned with the aid of radio frequency microwave double-resonance experiments. A tentative assignment of these excited-state spectra was proposed by appealing to the results of density functional theory vibrational frequency calculations performed at the B3LYP/6-311++(3df,2pd) level. The energetically preferred conformer of the molecule allowed a close approach between a hydrogen atom belonging to the phosphino group and the edge of the cyclopropyl ring. The possibility of the formation of an intramolecular hydrogen bond to electron density associated with so-called banana bonds is discussed.     

A quantum chemical study of the electronic structure of substituted germocanes

The PRIRODA (riDFT method, BLYP functional, hf.bas basis set) and Gaussian 98 (HF method, 6-311G(d,p) basis set) programs are used to calculate the spatial and electronic structures of a number of molecules of substituted germocanes with a general formula of R,Rs’Ge(XCH₂CH₂)₂Y (where X = C, O, S, and Y = N, O, S). With the use of the AIM method the topological characteristics of Ge—Y donation bonds are calculated in these molecules. An analysis of the obtained data shows that up to the values of Ge—Y interatomic distances of ~2.7 Å these bonds can be considered as the intermediate type bonds. At Ge—Y distances of ~3.0 Å these bonds become ionic, therefore the Coulomb interaction between oppositely charged Ge and Y atoms mainly contributes to Ge—Y bonding.     

Electronic structure and reactivity of guanylthiourea: A quantum chemical study

Electronic structure analysis of guanylthiourea (GTU) and its isomers has been carried out using quantum chemical methods. Two major tautomeric classes (thione and thiol) have been identified on the potential energy (PE) surface. In both the cases conjugation of pi‐electrons and intramolecular H‐bonds have been found to play a stabilizing role. Various isomers of GTU on its PE surface have been analyzed in two different groups (thione and thiol). The interconversion from the most stable thione conformer ( GTU‐1 ) to the most stable thiol conformer ( GTU‐t1 ) was found to take place via bimolecular process which involves protonation at sulfur atom of GTU‐1 followed by subsequent C? N bond rotation and deprotonation. The detailed analysis of the protonation has been carried out in gas phase and aqueous phase (using CPMC model). Sulfur atom (S1) was found to be the preferred protonation site (over N4) in GTU‐1 in gas phase whereas N4 was found to be the preferred site of protonation in aqueous medium. The mechanism of S‐alkylation reaction in GTU has also been studied. The formation of alkylated analogs of thiol isomers (alkylated guanylthiourea) is believed to take place via bimolecular process which involves alkyl cation attack at S atom followed by C? N bond rotation and deprotonation. The reactive intermediate RS(NH₂)C? N? C(NH₂)₂⁺ belongs to the newly identified ^⊕N(←L)₂ class of species and provides the necessary dynamism for easy conversion of thione to thiol. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Spectroscopic and quantum chemical study on electronic and geometric properties of free and embedded dithizone molecules

The molecular and electronic structure of the three tautomeric forms of dithizone has been calculated by using semiempirical, density functional theory (DFT), and ab initio methods. Comparison of ground‐state energies shows the symmetric form most stabilized, but there is only a small barrier (<3 kcal/mol) for the hydrogen transfer from N? H toward H? S (enol form). For understanding the origin of the optical transitions intermolecular interactions have to be taken into account. By using the supermolecule method, the absorption band pattern can be rationalized already on the level of the PM3 model. The nuclear magnetic resonance (NMR) solution spectrum is interpreted in terms of an equilibrium between the symmetric and the enol forms of dithizone. The appearance of strong EPR signals only for the solid state reflects a considerable lowering of the triplet state (symmetric form). Experimental features are discussed in view of calculated energies (stabilization), chemical shifts (NMR), and SOMO orbitals (EPR). © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

X-ray spectral and quantum chemical study of the electronic structure of thiacalix[4]-arenes and their acyclic analogs

An X-ray photoelectron and X-ray emission study of the charge state of thiacalix[4]arenes is performed with a comparison with the data of quantum chemical calculations. Relaxation corrections between the Kohn-Sham orbital energies calculated by the DFT method and experimental parameters of the X-ray emission and photoelectron spectra of the studied compounds are estimated. It is shown that the formation of a cyclic aromatic system in thiacalixarenes results in a decrease in the energy of orbitals involving p-π interactions of the bridging sulfur atoms and aromatic moieties, which determines the features of the X-ray emission spectra of the studied compounds.     

Spectroscopic investigations and quantum chemical computational study of (E)-4-methoxy-2-[(p-tolylimino)methyl]phenol

In this work the electronic structure of (E)-4-methoxy-2-[(p-tolylimino)methyl]phenol has been characterized by the B3LYP/6-31G(d) level by using density functional theory. The experimental infrared and electronic absorption spectra have been obtained and compared with the theoretically obtained ones. Molecular electrostatic potential map has been evaluated; natural bond orbital and frontier molecular orbitals analysis have been performed from the optimized geometry. The energetic behavior of the title compound has been examined in solvent media using polarizable continuum model. The non-linear optical properties have been computed with the same level of theory. In addition, the changes of thermodynamic properties have been obtained in the range of 100-500 K.     

X-ray and quantum chemical study of the electronic structure of glycine and its metal complexes

OK_α spectra of glycine and some transition metal complexes with glycine ligands were obtained. The electronic structure of the glycine zwitterion is calculated by a quantum chemical method, and a theoretical X-ray spectrum of the glycine molecule is constructed. The nature of the metal-ligand bond in the compounds is discussed on the basis of experimental spectra and theoretical calculations. Institute of Inorganic Chemistry, Siberian Branch, Russian Academy of Sciences. Moscow State Academy of Light Industry, Novosibirsk Branch. Moscow State Academy of Light Industry. Novosibirsk State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 34, No. 4, pp. 112–116, July–August, 1994. Translated by L. Smolina     

Spectroscopic and quantum chemical investigation of enol-enol tautomerism of 2-acetyltetronic acid

Vibratonal spectra of 2-acetyltetronic acid (ATA) (3-acetyloxolane-2,4-dione) were investigated in different aggregate states.Ab initio quantum chemical calculations (3-21G basis set) of 2-formyltetronic acid as analogue of ATA and semi empirical calculation of ATA were carried out. The tautomeric forms of ATA can be arranged in the following series with respect to thermodynamic stability (in decresing order):1a,1b,2a,2b.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1043–1048, June, 1995.     

Molecular structure of magnesium dibromide: an electron diffraction and quantum chemical study

The molecular structure of magnesium dibromide was investigated by high-level computational techniques and gas-phase electron diffraction. The vapor consisted of about 88% monomeric and 12% dimeric species at the electron diffraction experimental conditions at 1065 K. The geometrical parameters and vibrational characteristics of monomeric, dimeric, and trimeric magnesium dibromide species were determined by computations. Very high level computations with extended basis sets and relativistic pseudopotentials on bromine were needed to reach an agreement between computed and estimated experimental equilibrium geometries for the monomer. For both the dimer and the trimer, different geometrical arrangements were tested. Their ground-state structures have halogen bridges with four-membered ring geometries and D2h and D2d symmetry, respectively. Thermodynamic parameters have also been calculated.     

Spectroscopic study of the formation and structure of polyselenacyclobutane

Selenacyclobutane (trimethylene selenide) readily undergoes photochemical reaction to give polymeric products. Also, the material polymerizes rapidly when the polycrystalline solid film liquifies on a salt substrate in vacuum. Upon polymerization of the sample, infrared and Raman spectra exhibit profound changes which definitely establish ring cleavage. The Raman spectra of the polymer reveal strong C–Se stretching peaks but little or no scattering in the region of Se–Se stretching, strongly suggesting that the polymerization process proceeds in a regular head-to-tail fashion. An EPR study of the monomer exposed to ultraviolet radiation at ?180°C supports this fact, since the resulting spectrum is indicative of an intermediate radical species, (CH₂CH₂-CH₂Se)_n., where n is sufficiently large that the terminal electrons do not interact. No triplet spectra were observed. Molecular oxygen apparently plays an important role in the polymerization kinetics, since it is found that degassed samples of the substance, in contrast to those which have not been degassed, polymerize rapidly even under room illumination. Freezing-point depression measurements fix a lower limit to the average molecular weight of the polymer at 2700 (n = 23 monomer units).