Pathways of polaron and bipolaron transport in DNA double strands

We investigate the pathways of polaron and bipolaron transports in DNA double strands with an extended Su-Schrieffer-Heeger model involving the effects of solvent polarization. We find that the long-range transport of polaron/bipolaron under high electric field at low temperature is the field-facilitated sequential tunneling through spatial-disordered potential barriers via multiple intrastrand and interstrand pathways. Although the interstrand pathways may be very active and effective in some DNA sequences, the intrastrand ones always dominate the charge transfer when the excess charge moves close to the final acceptor.     

Theoretical study on oligothiophene N-succinimidyl esters: size and push-pull effects

We report a theoretical study on the optical properties of bithiophene and terthiophene N-succinimidyl esters, which have been functionalized with a methylsulfanyl group in the alpha or the beta positions. Time-dependent density functional theory (TD-DFT) and approximate coupled-cluster singles and doubles with the resolution of identity technique (RI-CC2) calculations have been performed in the ground and excited states. The RI-CC2 results for absorption and fluorescence energies are in better qualitative agreement with experiments, whereas TD-DFT does not correctly describe the higher energy part of the absorption spectra of beta-substituted bithiophenes, due to the presence of charge-transfer states. Systems functionalized at the alpha position show a large red-shift of the main absorption and fluorescence band and a larger Stokes-shift compared to the unsubstituted species. These effects are in most cases less pronounced for the beta-substituted structures. In particular, we found that the Stokes-shift of the alpha-substituted structures is larger than the one of the beta-substituted species due to a more planar orientation of the methylsulfanyl group with respect to the neighbouring thiophene in the excited state.     

Theoretical study of low-lying triplet states of aniline

Multireference complete active space self-consistent-field CASSCF(10,12)/ANO and second-order perturbation theory MS-CASPT2 calculations were performed to determine the vertical low-lying singlet and triplet states of aniline. The sequence of the seven lower lying triplet states is T1(1(3)A'), T2(1(3)A' '), T3(2(3)A'), T4(3(3)A'), T5(2(3)A' '), T6(4(3)A'), and T7(3(3)A' '). The 3(3)A', 4(3)A', and 3(3)A' ' states are assigned as 3s, 3py, and 3pz Rydberg states, respectively, while other states correspond to pi <-- pi excitations. Both the T1 and T2 states are found to be below at the lowest-lying singlet S1 (1(1)A' ') state. Geometry, vibrational modes, and electron distribution of the lowest lying T1 state were determined using UB3LYP calculations. The vertical and adiabatic singlet-triplet energy gaps DeltaE(S0-T1) amount to 3.7 and 3.5 +/- 0.2 eV, respectively. In clear contrast with the S0 state, the triplet aniline is no longer aromatic, and its protonation occurs preferentially at the ring meta-carbon site, with a proton affinity PA = 243 +/- 3 kcal/mol.     

Theoretical investigation of excited states of oligothiophene anions

Electron-hole symmetry upon p- and n-doping of conducting organic polymers is rationalized with Hückel theory by the presence of symmetrically located intragap states. Since density functional theory (DFT) predicts very different geometries and energy level diagrams for conjugated pi-systems than semiempirical methods, it is an interesting question whether DFT confirms the existence of electron-hole symmetry predicted at the Hückel level. To answer this question, geometries of oligothiophene anions with 5-19 rings were optimized and their UV/vis spectra were calculated with time-dependent DFT. Although DFT does not produce symmetrically placed sub-band energy levels, spectra of cations and anions are almost identical. The similarity in transition energies and oscillator strengths of anions and cations can be explained by the fact that the single sub-band energy level of cations lies above the valence band by the same amount of energy as the single sub-band level of anions lies below the conduction band. This and the resemblance of the energy level spacings in valence bands of cations to those in conduction bands of anions give rise to peaks with equal energies and oscillator strengths.     

Theoretical study of the triplet state aryl cations recombination: A possible route to unusually stable doubly charged biphenyl cations

The self‐recombination reactions of 4‐aminophenyl cations and parent phenyl cations, each in ground triplet states, are studied within the framework of density functional theory. Only the total zero spin (singlet state) is chosen, as the quintet and triplet counterparts are nonreactive in these systems. The recombination products are the benzidine and biphenyl doubly charged cations. These species are unexpectedly stable. The transition state of the 4‐aminophenyl cations reaction is located at the distance of about 4.0 Å between the ipso‐carbon atoms. The activation barrier is predominantly formed by electrostatic repulsion between two cations and is estimated to be 27.6 kcal mol^?1 [B3LYP/6–311+G(d,p)]. Similar results are obtained for the phenyl cations recombination. The general importance of the participation of other aryl cations in analogous organic reactions is discussed. © 2013 Wiley Periodicals, Inc.     

Theoretical study of singlet and triplet excitation energies in oligothiophenes

We have analyzed singlet and triplet excitation energies in oligothiophenes (up to five rings) using time-dependent density-functional theory (TD-DFT) with different exchange-correlation functionals and compared them with results from the approximate coupled-cluster singles and doubles model (CC2) and experimental data. The excitation energies have been calculated in geometries obtained by TD-DFT optimization of the lowest excited singlet state and in the ground-state geometries of the neutral and anionic systems. TD-DFT methods underestimate photoluminescence energies but the energy difference between singlet and triplet states shows trends with the chain-length similar to CC2. We find that the second triplet excited state is below the first singlet excited state for long oligomers in contrast with the previous assignment of Rentsch et al. (Phys.Chem. Chem. Phys. 1999, 1, 1707). Their photodetachment photoelectron spectroscopy measurements are better described by considering higher triplet excited states.     

Direct conformational analysis of a 10 nm long oligothiophene wire

Conformational variations of a 10 nm long oligothiophene wire comprising 24 thiophene rings on Au(111), which are related to the various straight and bent shapes of the long wires, have been directly visualized by scanning tunneling microscopy (STM). The local bending angles within the wire are well characterized as s-cis/s-trans configurations of individual thiophene rings. We find that the partial stabilization of the metastable s-cis conformation results in the wire bending, which should be influenced by solvent and substituents.     

Influence of triplet state multidimensionality on excited state lifetimes of bis-tridentate RuII complexes: a computational study

Calculated triplet excited state potential energy surfaces are presented for a set of three bis-tridentate Ru(II)-polypyridyl dyes covering a wide range of room temperature excited state lifetimes: [Ru(II)(tpy)(2)](2+), 250 ps; [Ru(II)(bmp)(2)](2+), 15 ns; and [Ru(II)(dqp)(2)](2+), 3 μs (tpy is 2,2':6',2″-terpyridine, bmp is 6-(2-picolyl)-2,2'-bipyridine, and dqp is 2,6-di(quinolin-8-yl)pyridine). The computational results provide a multidimensional view of the (3)MLCT-(3)MC transition for the investigated complexes. Recently reported results of significantly prolonged (3)MLCT excited state lifetimes of bis-tridentate Ru(II)-complexes, for example [Ru(II)(dqp)(2)](2+), are found to correlate with substantial differences in their triplet excited state multidimensional potential energy surfaces. In addition to identification of low-energy transition paths for (3)MLCT-(3)MC conversion associated with simultaneous elongation of two or more Ru-N bonds for all investigated complexes, the calculations also suggest significant differences in (3)MLCT state volume in the multidimensional reaction coordinate space formed from various combinations of Ru-N bond distance variations. This is proposed to be an important aspect for understanding the large differences in experimentally observed (3)MLCT excited state lifetimes. The results demonstrate the advantage of considering multidimensional potential energy surfaces beyond the Franck-Condon region in order to predict photophysical and photochemical properties of bis-tridentate Ru(II)-polypyridyl dyes and related metal complexes.     

硅甲基硼烯异构化反应机理研究所

用量子化学理论方法研究了硅甲基硼烯(SiH~3B)单重态和三重态异构化反应,计算了有关化合物的电子结构, 优化了过渡态构型, 讨论了两个反应的控制类型。     

Theoretical study of multiphoton ionization of cyclohexadienes and unimolecular decomposition of their mono- and dications

Quantum chemical calculations of the geometric structure, vertical excitation energies, and ionization potentials for the isomeric pair of 1,3- and 1,4-cyclohexadienes and their mono- and dications have been performed employing a variety of theoretical methods and basis sets. The computed ionization potentials and electronic excitation energies are used to evaluate the range of internal energies available for fragmentation of the cations following multiphoton resonance ionization of the cyclohexadienes in intense laser field. The conditions governing the competition between multiple ionization and decomposition of the ions are also discussed. Calculations of stationary points on the potential energy surfaces for various fragmentation channels and relative product yields at different available internal energies are then utilized to analyze the trends in branching ratios of major dissociation products of the 1,4-cyclohexadiene(2+) dication, which include C(3)H(3)(+) + C(3)H(5)(+), C(2)H(3)(+) + C(4)H(5)(+), and C(4)H(3)(+) + C(2)H(5)(+).     

Theoretical study of the excited singlet and triplet states of alloxan

The possibility of excited‐state protomeric shifts in the biologically important molecule, alloxan, is investigated. We have focused on the S₁ and T₁ excited states of alloxan and its hydroxy tautomers. Modifications brought in by excitation on the relative stabilities, activation barriers, and optimized geometries, computed at the MNDO, AM1, and PM3 levels of approximation, have been discussed for both excited electronic states. The absorption and fluorescence spectra for the three tautomers are also discussed. Results show significant changes in the geometries on excitation, although the changes are similar for the singlet and triplet excited states. Though the relative stability orders do not change, the 2‐hydroxy tautomer is stabilized, while the 4‐hydroxy tautomer gets destabilized on excitation. The excited states are (n,π*) states, involving the promotion of a nonbonding oxygen lone pair from the CO? CO? CO moiety, which explains why the oxygens of this group become less basic and the 4‐hydroxy tautomer gets destabilized on excitation. However, the activation barriers do not reduce significantly on excitation, and this precludes the possibility of ground‐ or excited‐state proton transfer in the gas phase. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

三重态SiCP2异构体的结构和稳定性的理论研究

采用DFT,QCISD和CCSD(T)等理论计算方法对三重态SiCP2异构体的结构和稳定性进行了理论研究.在B3LYP/6-311G(d)水平下,共计算得到由17个过渡态相连接的15个异构体.在CCSD(T)/6-311 +G(2df)//QCISD/6-311G(d)水平下,考虑重点振动能相对能量最低的三元环状异构体P-cCSiP 8(0.0 kJ/mol)及四元环状结构的cPCSiP 4具有相当大的动力学稳定性,在一定的实验室和星际条件下可能被检测到.另外,对它们的成键性质也进行了分析.     

ESR study of the photoexcited triplet state of substituted 2-acetonaphthones

Electron spin resonance of phosphorescent triplet states of a number of 6-substituted-2-acetonaphthones is studied at 77 K in toluene glass. The life-times of the triplet states and zero-field parameter D* have been measured from Δm_s = ± 2 resonance. The life-times and the zero-field splitting parameters indicate that the lowest triplet states have mainly π, π* character.     

Acetone in its lowest excited triplet state: an isotope dependent ODMR study

The lowest excited triplet state T₁ of acetone-h₆ and acetone-d₆ was investigated with a pulsed dye laser equipped Optical Detection of Magnetic Resonance spectrometer. The results obtained for this prototype aliphatic carbonyl compound are discussed with reference to a recent ab initio calculation on formaldehyde. The peculiarities of the acetone T₁ are largely determined by its distinct non-planar geometry: Our data indicate that the carbonyl group is rotated out of the plane defined by the three C-atoms, and the distortion angle is found to be appoximately 38°C, similar to the formaldehyde value. This is a central result of our investigation: All of the observed zero-field splitting parameters, ODMR linewidths, kinetic data, and the deuterium effects can be satisfactorily rationalized with this out-of-plane distortion.     

Intermolecular hydrogen atom abstraction from the fluoranil triplet excited state: a Raman study

Intermolecular hydrogen abstraction reaction mechanisms in photoexcited ketones have traditionally been studied using time resolved absorption spectroscopy. Another approach is presented involving time resolved resonance Raman spectroscopy to study such reactions, using the fluoranil/isopropanol system as an example. It has been shown that vibrational spectra can be recorded starting from the triplet excited state to the product state (radical anion) via the intermediate state, which is the ketyl radical. Thus, it is demonstrated that following the reaction evolution in terms of structural (vibrational modes) details would prove to be useful not only for mechanistic investigation but also for structure-reactivity correlations in photoexcited systems.     

The triplet state of 4-nitronaphthylamine

Nanosecond spectroscopic and kinetic studies of 4-nitronaphthylamine (4-NO₂NA) in aerated and deaerated nonpolar solvents at room temperature show a transient species with absorption maxima at 470 and 665 nm. The rate constant for the decay of this species in deaerated benzene is 6.7 × 10⁵ sec^?1, while in aerated benzene solutions the species is quenched by oxygen with arate constant k = 2.0 × 10⁹M^?1·sec^?1. The transient absorption at 470and 665 nm is assigned to the lowest triplet excited state of 4-NO₂NA. In polar solvents, however, electronic excitation of 4-NO₂NA does not lead to any detectable transient absorption between 400 and 800 nm for the temperature range of 25 to ?150°C. This is attributed to lack of intersystem crossing of 4-NO₂NA in polar solvents.