Thioacetylacetone: structural and vibrational assignments.

Thioacetylacetone and its variously deuterated isotopomers have been investigated using electronic and vibrational spectroscopy combined with quantum chemical calculations. Thioacetylacetone is known for its photochromic properties, but the structures of the initial and final forms have been the subject of a long debate. Analysis of the IR spectra recorded in low-temperature argon and xenon matrices, room-temperature solutions, and in the gas phase has allowed us to establish the nature of the photochromic species and of its precursor. Similar to the case of another beta-thioxoketone, monothiodibenzoylmethane, the photo-product has been assigned to the nonchelated SH exo-rotamer of the (Z)-enethiol tautomeric form, whereas the dominant ground-state species corresponds to the chelated (Z)-enol tautomeric form. Detailed vibrational assignments have been proposed for both forms based on quantum chemical calculations and polarization experiments. In the case of the chelated (Z)-enol species prevailing in the ground state, a second-order perturbative anharmonic analysis at the B3LYP/cc-pVTZ level indicated strong anharmonic effects associated with the intramolecular hydrogen bond, leading to a shift of more than 600 cm-1 of the wavenumber of the OH-stretching vibration. A small fraction of the SH endo-rotameric chelated (Z)-enethiol form was also detected under unperturbed conditions. The (Z)-enethiol form can be converted into the (Z)-enol form by irradiation at 290 nm.     

Two rotors potential scans and vibrational assignments for dihalomethylsulfonyl isocyanates

The conformational behavior and structural stability of dichloro and difluoromethyl-sulfonyl isocyanates were investigated by quantum mechanical DFT and ab initio calculations. The 6-311 + + G** basis set was employed to include polarization and diffuse functions in the calculation at B3LYP and MP2 levels. The molecules were found to exist in a mixture of trans-gauche and gauche-gauche conformations at ambient temperatures. From the calculations the isocyanate NCO moiety was predicted to nearly eclipse one of the sulfony S=O bonds in the two stable conformers of both molecules. The potential scans for the rotations of the two NCO and CX2H rotors were calculated from which the rotational barriers could be estimated. The vibrational frequencies, potential energy distributions, IR intensities as well as depolarization ratios were calculated.     

Potential energy scans and vibrational assignments of cyclopropanecarboxylic acid and cyclopropanecarboxamide

The structural stability and internal rotations in cyclopropanecarboxylic acid and cyclopropanecarboxamide were investigated by the DFT-B3LYP and the ab initio MP2 calculations using 6-311G** and 6-311+G** basis sets. The computations were extended to the MP4//MP2/6-311G** and CCSD(T)//MP2/6-311G** single-point calculations. From the calculations the molecules were predicted to exist predominantly in the cis (C=O group eclipses the cyclopropane ring) with a cis-trans barrier of about 4-6kcal/mol. The OCOH torsional barrier in the acid was estimated to be about 12-13kcal/mol while the corresponding OCNH torsional barrier in the amide was calculated to be about 20kcal/mol. The equilibrium constant k for the cis<-->trans interconversion in cyclopropanecarboxylic acid was calculated to be 0.1729 at 298.15K that corresponds to an equilibrium mixture of about 85% cis and 15% trans. The vibrational frequencies were computed at the DFT-B3LYP level. Normal coordinate calculations were carried out and potential energy distributions were calculated for the low energy cis conformer of the molecules. Complete vibrational assignments were made on the basis of normal coordinate calculations and comparison with experimental data of the molecules.     

Resonance Raman spectra and vibrational assignments of Azulene-d0 and Azulene-d8

The observed resonance effects in the Raman spectra of Azulene (C₁₀H₈) and its completely deuterated analog are utilized to assign the totally symmetric modes of these molecules. In conjunction with the data on the i.r. spectra and the normal coordinate analysis a complete assignment of the vibrational modes of these molecules is presented.The experimental excitation profiles are analyzed in the light of some current theoretical approaches. The experimental data strongly suggest that the variation of transition moment with the vibrational coordinate gives a dominant factor in determining the resonance Raman intensity of a mode.     

Theoretical anharmonic Raman and infrared spectra with vibrational assignments for monofluoroaniline isomers

The ortho-meta-, and para-fluoro substituted anilines are prototype molecules for investigation of the interactions of both the amino group and the fluorine atom with the aromatic ring. The molecular structures, natural atomic charges and theoretical anharmonic Raman and infrared spectra of the three fluoroaniline isomers have been calculated by using the density functional B3LYP method with the extended 6-311++G(df,pd) basis set. The Raman and infrared spectra of 2FA, 3FA, and 4FA have been recorded. The detailed vibrational assignments of the experimental spectra have been made on the basis of the calculated potential energy distributions, PEDs. The effect of fluorine substituent on the aniline ring geometry and charge distribution, the nature of the characteristic “marker bands” and a quenching of intensities of some bands are discussed. It is shown that the frequencies of the NH₂ stretching vibrations depend on the degree of pyramidalization of the C-NH₂ group, in the isomers. In 2FA and 3FA, the NH₂ stretching frequencies are higher than those in 4FA. This corresponds to a more flattened structure of the amino group in 2FA and 3FA, in comparison to 4FA.     

Configuration-sensitive infrared bands and vibrational assignments of S-alkyldithizones based on isotopic substitutions

By comparison of the infrared spectra of S-methyl-, S-ethyl- and S-isopropyidithizones in the solid state, the configuration-sensitive i.r. bands have been obtained for the trans-syn-s-trans and trans-anti-s-trans configurations with respect to the NN, CN and CN bonds of the formazan skeleton. The vibrational assignment of S-methyldithizone has been made based on the frequency shifts on isotopic substitutions: 1,5-¹⁵N- and 2,4-¹⁵N- substitutions, deuterium substitutions of the methyl group, phenyl groups and NH group, and deuterium substitutions of both phenyl and NH groups.     

Infrared spectrum of solid isocyanic acid (HNCO): vibrational assignments and integrated band intensities

Infrared spectra of thin films of solid HNCO condensed from the gas phase are characterized in terms of their vibrational frequencies, mode assignments, and integrated band intensities at low temperatures ( approximately 20-145 K). Isocyanic acid is shown to react with water (H2O) and ammonia (NH3) even at low temperatures; consequently, it may be an important species in the chemistry of interstellar ices and comets.     

Conformational stability, r0 structural parameters, and vibrational assignments of mono-substituted cyclobutanes: fluorocyclobutane

Variable temperature (-55 to -100°C) studies of the infrared spectra (3500-400 cm(-1)) of fluorocyclobutane, c-C(4)H(7)F, dissolved in liquid xenon have been carried out as well as the infrared spectra of the gas. By utilizing eight pairs of conformers at 10 different temperatures, the enthalpy difference between the more stable equatorial conformer and the axial form has been determined to be 496±40 cm(-1) (5.93±0.48 kJ/mol). The percentage of the axial conformer present at ambient temperature is estimated to be 8±1%. The ab initio MP2(full) average predicted energy difference from a variety of basis sets is 732±47 cm(-1) (9.04±0.44 kJ/mol) and the average value of 602±20 cm(-1) from density functional theory predictions by the B3LYP method are significantly larger than the experimentally determined enthalpy value. By utilizing previously reported microwave rotational constants for the equatorial and axial conformers combined with ab initio MP2(full)/6-311+G(d,p) predicted structural values, adjusted r(0) parameters have been obtained. The determined heavy atom structural parameters for the equatorial [axial] conformer are: distances (?) C-F=1.383(3) [1.407(3)], C(α)-C(β)=1.543(3) [1.546(3)], C(β)-C(γ)=1.554(3) [1.554(3)] and angles (°) ∠C(α)C(β)C(γ)=85.0(5) [89.2(5)], ∠C(β)C(α)C(β)=89.3(5) [89.2(5)], ∠F-(C(β)C(α)C(β))=117.4(5) [109.2(5)] and a puckering angle of 37.4(5) [20.7(5)]. The conformational stabilities, harmonic force fields, infrared intensities, Raman activities, depolarization ratios and vibrational frequencies have been obtained for both conformers from MP2(full)/6-31G(d) ab initio calculations and compared to experimental values where available. The results are discussed and compared to the corresponding properties of some other monosubstituted cyclobutanes with halogen and pseudo-halogen substituents.     

Comment on the assignments of some vibrational bands of oxalyl fluoride

In view of existing contradictory assignments of the symmetrical stretching vibrations associated with the formal C-C and C-F bonds of trans/cis oxalyl fluoride, an additional theoretical analysis of the corresponding calculated wavenumbers was preformed on trans-C₂O₂F₂ and cis-C₂O₂F₂ based on previously calculated ab initio scaled force fields at the HF/6-31G computational level and new force fields calculated at the MP2/aug-cc-pVTZ level. This novel analysis included computational data from the isotopic shifts brought about by incorporating ¹³C and ¹⁴C atoms into the structure. A detailed examination of the calculated wavenumbers made it possible to validate the assignments of the ν₂ and ν₃ wavenumbers in the trans-C₂O₂F₂ and cis-C₂O₂F₂ molecules as the formal C-C bond stretching and the formal C-F bond symmetrical stretching vibrations, respectively.     

Vibrational assignments of six-coordinate ferrous heme nitrosyls: new insight from nuclear resonance vibrational spectroscopy

This Communication addresses a long-standing problem: the exact vibrational assignments of the low-energy modes of the Fe-N-O subunit in six-coordinate ferrous heme nitrosyl model complexes. This problem is addressed using nuclear resonance vibrational spectroscopy (NRVS) coupled to (15)N(18)O isotope labeling and detailed simulations of the obtained data. Two isotope-sensitive features are identified at 437 and 563 cm(-1). Normal coordinate analysis shows that the 437 cm(-1) mode corresponds to the Fe-NO stretch, whereas the 563 cm(-1) band is identified with the Fe-N-O bend. The relative NRVS intensities of these features determine the degree of vibrational mixing between the stretch and the bend. The implications of these results are discussed with respect to the trans effect of imidazole on the bound NO. In addition, a comparison to myoglobin-NO (Mb-NO) is made to determine the effect of the Mb active site pocket on the bound NO.     

Theoretical study of the force field and vibrational assignments of acetamide and deuterated analogues

The complete harmonic force constants of acetamide have been evaluated by ab initio calculations at the Hartree-Fock level with the 4–31G(d) basis set. The force field was scaled to compensate for the systematic overestimations of the Hartree-Fock-level force constants by empirical factors using the matrix isolation IR spectra of CH₃CONH₂ and CD₃CONH₂. A normal coordinate treatment has been carried out with the scaled force field to analyze the vibrational spectra of CH₃CONH₂. A normal coordinate treatment has been carried out with the scaled force field to analyze the vibrational spectra of CH₃COND₂, cis-CH₃CONHD and trans-CH₃CONHD. The effect of cis/trans isomerism of CH₃CONHD on the fundamental bands was well reproduced by the calculations. The fundamental vibrations were also predicted for CD₃COND₂, cis-CD₃CONHD and trans-CD₃CONHD.     

2-Bromohydroquinone: structures, vibrational assignments and RHF, B- and B3-based density functional calculations

Vibrational spectral measurements, namely, infrared (4000-400 cm(-1)) and Raman (3500-50 cm(-1)) spectra have been made for 2-Bromohydroquinone. Optimized geometrical structures, harmonic vibrational frequencies and intensities have been computed by the ab initio (RHF), B-based (BLYP, BP86) and B3-based (B3P86, B3LYP, B3PW91) density functional methods using 6-31G(d) basis set. A complete assignment of the observed spectra has been proposed. Coupling of vibrations has been determined by calculating potential energy distributions (PEDs) at BP86/6-31G(d) level of theory. In the computed equilibrium geometries by all the levels, the bond lengths and bond angles show changes in the neighborhood of Bromine. Similarly, the vibrational spectra exhibit some marked spectral features unlike in hydroquinone and phenol. On the other hand, the infrared spectrum shows a clear evidence of O-H...O bonding near 3200 cm(-1) as in hydroquinone. Evaluation of the theoretical methods demonstrates that all the levels but the RHF have reproduced frequencies fairly accurately in the 2000-500 cm(-1); below 500 cm(-1) the RHF has performed reasonably well.     

Terahertz, infrared and Raman vibrational assignments of [FeFe]-hydrogenase model compounds

Using Raman, terahertz (THz), and mid-infrared (IR) spectroscopies, the vibrational spectra of two chromophore models of hydrogen-producing [FeFe]-hydrogenase, Fe₂(μ-S₂C₃H₆)(CO)₆ and Fe₂(μ-S₂C₂H₄)(CO)₆, have been assigned. The combination of absorption and scattering techniques, along with DFT calculations, allows for assignments to be made without traditional isotopic substitution methods.     

On the vibrational assignments and force constants of tetrasulphurtetraimide, (SNH)4

Infrared and Raman spectra of (S¹⁵NH)₄ and (S¹⁵ND)₄ have been recorded for the first time. The spectra are compared with those of (S¹⁴NH)₄ and (S¹⁴ND)₄ reported earlier. The observed isotopic shifts support the vibrational assignments and force constants published in 1977 by Steudel and Rose, while the alternative assignments published in 1978 by Turowski et al. and by Domingo and Orza are shown to be partly in error.     

Structural,vibrational and thermodynamics propertiesof Zn-based semiconductors

We have preformed first-principle calculations for the structural, vibrational and thermodynamic properties of the IIB–VIA Zn-based semiconductor compounds ZnX (X = O, S, Se, Te). The phonon dispersion curves along several high-symmetry lines at the Brillouin zone together with the corresponding phonon density of states are calculated using density-functional perturbation theory. The calculated phonon frequencies at the Γ, X, and L points of the Brillouin zone show good agreement with the experimental values and other calculations. The thermodynamics properties including the phonon contribution to the Helmholtz free energy ΔF, the phonon contribution to the internal energy ΔE, the entropy S, and the constant-volume specific heat C_V are determined within the harmonic approximation based on the calculated phonon dispersion relations. If 298 K is taken as a reference temperature, the difference values of H ? H₂₉₈ have been also calculated and compared with the available experimental data.     

Photoinduced Rydberg ionization spectroscopy of phenylacetylene: vibrational assignments of the C state of the cation

The photoinduced Rydberg ionization spectrum of the third excited electronic state of phenylacetylene cation was recorded via the origin of the cation ground electronic state. The origin of this state is 17 834 cm(-1) above the ground state of the cation, and the spectrum shows well-resolved vibrational features to the energy of 2200 cm(-1) above this. An assignment of the vibrational structure was made by comparison to calculated frequencies and Franck-Condon factors. From the assignments, and electronic structure considerations, the electronic symmetry of the C state is established to be (2)B(1).     

Vibrational spectra,conformational equilibria,ab initio calculations and vibrational assignments of ethylmethylfluorosilane

The infrared spectra of ethylmethylfluorosilane (CH₃SiHFCH₂CH₃) have been recorded as a vapour, liquid and solid at 78 K in the 4000–50 cm⁻¹ range and isolated in an argon matrix at ca. 5 K. Infrared spectra of two different solid phases were obtained after annealing to temperatures of 120 and 130 K, and recooling to 78 K. Although the IR spectra were quite similar in the MIR region, certain differences were noted in the FIR region below 400 cm⁻¹. The most stable conformer MeMe was present after annealing to 130 K, but three bands belonging to MeH were detected after annealing to 120 K. Various infrared bands changed intensity when the argon matrix was annealed to temperatures between 20 and 35 K, and some of these were related to changes in the conformational abundance.Raman spectra of the liquid were recorded at room temperature and at various temperatures between 295 and 153 K. Spectra of an amorphous and annealed solid were recorded at 78 K. In the variable temperature Raman spectra, various bands changed in intensity and were interpreted in terms of conformational equilibria between the three possible conformers. Complete assignments were made for all the bands of the most stable conformer MeMe. From various bands assigned to the three conformers, the conformational enthalpy difference ΔH from MeMe to the intermediate energy conformer MeH was found to be 0.5 kJ mol⁻¹ and to the highest conformer MeF was 0.7 kJ mol⁻¹. At ambient temperature this leads to 39% MeMe, 32% MeH and 29% of the MeF conformer in the liquid.Ab initio calculations in the RHF, MP2, DFT approximations and very accurate G2 calculations were carried out. With one exception, the MeMe conformer had the lowest enthalpy in all these calculations, the MeH had the intermediate and the MeF the highest enthalpy, and the calculations were in good agreement with the measurements.     

FT-IR and Raman spectra vibrational assignments and density functional calculations of 1-naphthyl acetic acid

This work deals with the vibrational spectroscopy of 1-naphthyl acetic acid. The molecular vibrations of 1-naphthyl acetic acid (NAA) is investigated in polycrystalline sample, at room temperature, by Fourier transform infrared (FT-IR) and FT-Raman spectroscopy. In parallel, ab initio and various density functional (DFT) methods were used to determine the geometrical, energetic and vibrational characteristics of NAA. On the basis of B3LYP/6-311+G** method and basis set combinations, a normal mode analysis was performed to assign the various fundamental frequencies according to the total energy distribution (TED). Simulation of infrared and Raman spectra, utilizing the results of these calculations led to excellent overall agreement with observed spectral patterns by refinement of scale factors.     

Theoretical study of the force field and vibrational assignments of thioacetamide and its deuterated analogues

The harmonic force field of thioacetamide has been obtained by Hartree-Fock level ab initio calculations using the 4-31G(d) basis set. The force constants have been scaled to reproduce the infrared fundamental bands of argon matrix isolated CH3CSNH2 and CD3CSNH2. Normal coordinate calculations based on the scaled force field suggested the co-presence of cis-CH3CSNHD and trans-CH3CSNHD in the infrared spectrum measured for CH3CSND2. The prediction of the fundamental bands was made for CD3CSND2, cis-CD3CSNHD and trans-CD3CSNHD.