Binding energies and dissociation pathways in the aniline-Ar2 cation complex

Mass analyzed threshold ionization spectroscopy is used to measure the Ar binding energy for the cationic aniline-Ar (An(+)-Ar) and aniline-Ar(2) (An(+)-Ar(2)) complexes. Since the experiments begin with the neutral species, photoexcitation creates the cations in the pi-bonding configuration with the Ar located above the phenyl ring. The binding energy in this conformation of the An(+)-Ar complex is determined to be 495+/-15 cm(-1). Measurements of An(+)-Ar(2) revealed the production of a lower energy dissociation product which is assigned to the An(+)-Ar H-bonding configuration. Combinations of measurements allow determination of the dissociation energy of this complex to be 640+/-20 cm(-1). The observation of a more stable H-bonded conformer is consistent with recent infrared experiments on An(+)-Ar complexes created by complexing An(+) with Ar, rather than creation through the neutral complex. Calculations are presented which closely reproduce the binding energy of the pi bound Ar but underestimate the stability of the H-bonded species.     

DNA photocleavage by a supramolecular Ru(II)-viologen complex

A novel Ru(II) complex possessing two sequentially linked viologen units, Ru-V(1)-V(2)(6+), was synthesized and characterized. Upon excitation of the Ru(II) unit (lambda(exc) = 532 nm, fwhm approximately 10 ns), a long-lived charge-separated (CS) state is observed (tau = 1.7 micros) by transient absorption spectroscopy. Unlike Ru(bpy)(3)(2+), which cleaves DNA upon photolysis through the formation of reactive oxygen species, such as (1)O(2) and O(2)(-), the photocleavage of plasmid DNA by Ru-V(1)-V(2)(6+) is observed both in air and under N(2) atmosphere (lambda(irr) > 395 nm).     

Sequential two photon dissociation of cyanobenzene cation

In continuation of our studies in the new area of multiple photon laser dissociation of ions, we report evidence for the sequential two photon dissociation of cyanobenzene radical cation, C₆H₅CN⁺, to produce predominantly C₆H⁺₄ and HCN. The complete excitation function for this process, as well as for a single photon process occurring at higher energies, are compared to the photoelectron spectrum of cyanobenzene to elucidate the nature of the transitions involved. An exact kinetic expression is derived and used to obtain information about the absorption spectra of C₆H₅CN⁺ in its ground vibronic state and with internal energy between 2.0 and 2.8 eV. Finally, data from our earlier study of benzene radical cation is reanalyzed and discussed.     

Dual molecular light switches for pH and DNA based on a novel Ru(II) complex. A non-intercalating Ru(II) complex for DNA molecular light switch

A new Ru(II) complex of [Ru(phen)(2)(Hcdpq)](ClO(4))(2) {phen = 1,10-phenanthroline, Hcdpq = 2-carboxyldipyrido[3,2-f:2',3'-h]quinoxaline} was synthesized and characterized. The spectrophotometric pH and calf thymus DNA (ct-DNA) titrations showed that the complex acted as a dual molecular light switch for pH and ct-DNA with emission enhancement factors of 17 and 26, respectively. It was shown to be capable of distinguishing ct-DNA from yeast RNA with this binding selectivity being superior to two well-known DNA molecular light switches of [Ru(bpy)(2)(dppz)](2+) {bpy =2,2'-bipyridine, and dppz = dipyrido-[3,2-a:2',3'-c]phenazine}and ethidium bromide. The complex bond to ct-DNA probably in groove mode with a binding constant of (4.67 ± 0.06) × 10(3) M(-1) in 5 mM Tris-HCl, 50 mM NaCl (pH = 7.10) buffer solution, as evidenced by UV-visible absorption and luminescence titrations, the dependence of DNA binding constants on NaCl concentrations, DNA competitive binding with ethidium bromide, and emission lifetime and viscosity measurements. To get insight into the light-switch mechanism, theoretical calculations were also performed by applying density functional theory (DFT) and time-dependent DFT.     

Isomerization and dissociation of n-butylbenzene radical cation

Fragmentation mechanisms of ionized butylbenzene to give m/z 91 and m/z 92 fragment ions have been examined at the G3B3 and G3MP2B3 levels of theory. It is shown that the energetically favored pathways lead to tropylium, Tr(+), and methylene-2,4-cyclohexadiene, MCD(?+), ions. Formation of m/z 91 benzyl ions, Bz(+), by a simple bond fission (SBF) process, needs about 30 kJ/mol more energy than Tr(+). Possible formation of C(7)H(8)(?+) ions of structures different from the retro-ene rearrangement (RER) product, MCD(?+), has been also considered. Comparison with experimental data of this "thermometer" system is done through a kinetic modeling using Rice-Ramsperger-Kassel-Marcus (RRKM) and orbiting transition state (OTS) rate constant calculations on the G3MP2B3 0 K energy surface. The results agree with previous experimental observation if (i) the competitive formation of Tr(+) and Bz(+) is taken into account in the m/z 91 pathway, and (ii) the stepwise character of the RER fragmentation is introduced in the m/z 92 fragmentation route.     

Effect of cation absorption on ionization/dissociation of cycloketone molecules in a femtosecond laser field

The mass spectra of a series of cycloketone molecules, cyclopentanone (CPO), cyclohexanone (CHO), cycloheptanone (CHPO), and cyclooctanone (COO) are measured in a 788 or 394 nm laser field with 90 fs pulse duration and the intensity ranging from 5 x 10(13) W/cm(2) to 2 x 10(14) W/cm(2). At 788 nm, a dominated parent ion peak and some weak peaks from the fragment ions C(n)H(m)+ are observed for CPO and CHO (a ratio P(+)/T(+), the parent ion yield to the total ion yield, is 81.6% and 52.6%, respectively). But the extensive fragment ion peaks are observed with the greatly reduced parent ion peak for CHPO (P(+)/T(+) = 5.5%) and that are even hard to be identified for COO. These observations are interpreted explicitly in the frame of the significant resonant effect of their cation photoabsorption on ionization and dissociation of these molecules. The present work also suggests that a nonadiabatic ionization occurs with a nuclear rearrangement due to the H movement in these molecules during the ionization in an intense femtosecond laser field.     

The ornithine effect in peptide cation dissociation

Facile cleavage C‐terminal to ornithine residues in gas phase peptides has been observed and termed the ornithine effect. Peptides containing internal or C‐terminal ornithine residues, which are formed from deguanidination of arginine in solution, were fragmented to produce either a y‐ion or water loss, respectively, and the complementary b‐ion. The fragmentation patterns of several peptides containing arginine were compared to those of the ornithine analogues. Conversion of arginine to ornithine results in a decrease of the gas phase proton affinity of the residue, thereby increasing the mobility of the ionizing proton. This alteration allows the nucleophilic amine to facilitate a neighboring group reaction to induce a cleavage of the adjacent amide bond. The selective cleavage at the ornithine residue is proposed to result from the highly favorable generation of a six‐membered lactam ring. The ornithine effect was compared with the well‐known proline and aspartic acid effects in peptide fragmentation using angiotensin II, DRVYIHPF and the ornithine analogue, DOVYIHPF. Under conditions favorable to either the aspartic acid (i.e. singly protonated peptide) or proline effect (i.e. doubly protonated peptide), the ornithine effect was consistently observed to be the more favorable fragmentation pathway. The highly selective nature of the ornithine effect opens up the possibility for conversion of arginine to ornithine residues to induce selective cleavages in polypeptide ions. Such an approach may complement strategies that seek to generate non‐selective cleavages of the related peptides. Copyright © 2013 John Wiley & Sons, Ltd.     

Light induced photoreactions with plasmid DNA by Cu/Ru and Cu/Ru/Pt multi-metallic porphyrins

Coordination of two [Ru(bipy)(2)Cl](+) moieties (where bipy = 2,2'-bipyridine) to the pyridyl nitrogens in the 5,10-positions of meso-5,10,15-(4-Pyridyl)-20-(pentafluorophenyl)porphyrin gives the diruthenium porphyrin complex II. Insertion of copper(II) into the porphyrin center allows for the third pyridyl nitrogen to coordinate to Pt(dmso)Cl(2). Electronic transitions associated with the ruthenium porphyrin include an intense Soret band and four less intense Q-bands in the visible region of the spectrum. An intense π-π* transition in the UV region associated with the bipyridyl groups and a metal to ligand charge transfer (MLCT) band appearing as a shoulder to the Soret band are also observed. A slight blue shift of the Soret band and collapse of the Q-bands into one band is observed upon insertion of Cu(II) into the porphyrin center. No change in the electronic spectrum is observed upon coordination of the Pt(dmso)Cl(2) moiety. Electrochemical properties associated with the complexes include a redox couple in the cathodic region attributed to the porphyrin and a redox couple in the anodic region due to the Ru(III/II) couple. DNA titrations of the Cu/Ru and Cu/Ru/Pt porphyrins indicate that both complexes interact strongly with DNA potentially through a partial intercalation mechanism. Gel electrophoresis studies indicate that the Cu/Ru/Pt porphyrin has a greater effect on DNA migration through the gel than the well known DNA binding agent cis-platin. Irradiation of aqueous solutions of the Cu/Ru porphyrin and supercoiled DNA at a 5:1 base pair to complex ratio (in the absence of oxygen) with visible light above 400 nm shows a nicking of the DNA. Repeat experiments in the presence of oxygen show that the Cu/Ru porphyrin photocleaves the DNA, giving the linear form, as evidenced by gel electrophoresis.     

Kinetics of dissociation of tris-1,10-phenanthroline-iron(II) complex cation in aqueous acetic acid solutions

The reaction under study is first order in the complex ion over the entire composition range of the mixed solvent. A minimum amount of mineral acid is needed for completion of the reaction (formation of colorless products), but the rate is practically acid-independent. The influence of solvent composition and some common ions on the reaction rate have been examined. A reaction mechanism consistent with the rate behavior is proposed where water is shown as an active participant in the dissociation process. A plausible explanation for the retardation effect of HSO₄ ⁻ as against the accelerating effect of Cl⁻ under water-scarce conditions is provided.     

Unimolecular dissociation reactions of methyl benzoate radical cation

The blackbody infrared radiation induced dissociation of methyl benzoate (C8H8O2(+*)) radical cation was investigated by using a Fourier transfer ion cyclotron resonance mass spectrometer equipped with a resistively heated (wire temperatures of 400-1070 K) wire ion guide. We observed product ion branching ratios that are strongly dependent upon wire temperature. At low temperatures (670-890 K) the major product ion C7H8 (+*) (m/z 92), which is formed by loss of CO2, and at higher temperatures (above 900 K), loss of methoxy radical ((*)OCH3) competes with loss of CO2. The energies of the various reactant ions and transition states for product ion formation were estimated by using density functional theory molecular orbital calculations, and a proposed mechanism for the dissociation chemistry of C8H8O2 (+*) involving a multistep rearrangement reaction is tested using the Master Equation formalism.     

Gas-phase dissociation pathways of a tetrameric protein complex

The gas-phase dissociation of the tetrameric complex transthyretin (TTR) has been investigated with tandem-mass spectrometry (tandem-MS) using a nanoflow-electrospray interface and a quadrupole time-of-flight (Q-TOF) mass spectrometer. The results show that highly charged monomeric product ions dissociate from the macromolecular complex to form trimeric products. Manipulating the pressure conditions within the mass spectrometer facilitates the formation of metastable ions. These were observed for the transitions from tetrameric to monomeric and trimeric product ions and additionally for losses of small molecules associated with the protein complex in the gas phase. These results are interpreted in the light of recent mechanisms for the electrospray process and provide insight into the composition and factors governing the stability of macromolecular ions in the gas phase.     

The triethylammonium-pyridine complex cation

The infrared spectra of the hydrogen bonded complex cation (triethylamine H⁺ pyridine) and of the three similar cations resulting from deuterium substitution in pyridine and at the bridge, have been examined in solution. The bridging proton occupies a potential with a single minimum closer to the triethylamine moiety. The V_s band structure is ascribed to Fermi resonance with triethylamine mode combinations. The N · N stretching mode of this complex, and also of the (trimethylamine H⁺ pyridine) complex have been observed in the far-infrared range.The present complex is weaker than the corresponding trimethylamine one.     

Sulfoxidation on a SiO2-supported Ru complex using O2/aldehyde system

A site-isolated SiO(2)-supported Ru-monomer complex, whose structure was characterized by means of solid-state NMR, XPS, UV/vis, and Ru K-edge EXAFS, was found to be efficient for sulfoxidation using an O(2)/aldehyde system. Significant enhancement of sulfoxidation rates was observed on the SiO(2)-supported Ru complex for various sulfide derivatives.     

Photo-activation of Pd-catalyzed Sonogashira coupling using a Ru/bipyridine complex as energy transfer agent

The mixed catalyst system, Pd(CH3CN)2Cl2/P(t-Bu)3/[Ru(2,2'-bipyridine)3].2PF6, promotes the copper-free Sonogashira coupling reaction of aryl bromides at room temperature under irradiation of visible light.     

正基于吡啶鎓阳离子对配合物的合成及表征

合成了马来二氰基二硫烯镍(Ⅱ)配合物,[2-Na Phth Me Py NH2]2[Ni(mnt)2]([2-Na Phth Me Py NH2]+为1-(2’-萘苄基)-2-氨基吡啶鎓离子),并用元素分析,UV,IR,单晶X-射线衍射表征了其组成和结构。结果表明,配合物系单斜晶系,空间群P21/c,a=13.335(2),b=7.9458(12),c=17.480(3),α=90°,β=97.646(2)°,γ=90°,V=1835.7(5),Z=2。     

Light-induced water oxidation by a Ru complex containing a bio-inspired ligand

The new Ru complex 8 containing the bio-inspired ligand 7 was successfully synthesized and characterized. Complex 8 efficiently catalyzes water oxidation using Ce(IV) and Ru(III) as chemical oxidants. More importantly, this complex has a sufficiently low overpotential to utilize ruthenium polypyridyl-type complexes as photosensitizers.     

Multiphoton dissociation dynamics of BrCl and the BrCl+ cation

Ion imaging methods have enabled identification of three mechanisms by which (79)Br(+) and (35)Cl(+) fragment ions are formed following one-color multiphoton excitation of BrCl molecules in the wavelength range 324.6 > lambda > 311.7 nm. Two-photon excitation within this range populates selected vibrational levels (v'= 0-5) of the [X (2)Pi(1/2)]5ssigma Rydberg state. Absorption of a third photon results in branching between (i) photoionization (i.e. removal of the Rydberg electron-a traditional 2 + 1 REMPI process) and (ii)pi*<--pi excitation within the core, resulting in formation of one or more super-excited states with Omega= 1 and configuration [A (2)Pi(1/2)]5ssigma. The fate of the latter states involves a further branching. They can autoionize (yielding BrCl(+)(X (2)Pi) ions in a wider range of v(+) states than formed by direct 2 + 1 REMPI). Further, one-photon absorption by the parent ions resulting from direct ionization or autoionization leads to formation of Br(+) and (energy permitting) Cl(+) fragment ions. Alternatively, the super-excited molecules can fragment to neutral atoms, one of which is in a Rydberg state. Complementary ab initio calculations lead to the conclusion that the observed [Cl**[(3)P(J)]4s + Br/Br*] products result from direct dissociation of the photo-prepared super-excited states, whereas [Br**[(3)P(J)]5p + Cl/Cl*] product formation involves interaction between the [A (2)Pi(1/2)]5ssigma and [X (2)Pi(1/2)]5psigma Rydberg potentials at extended Br-Cl bond lengths. Absorption of one further photon by the resulting Br** and Cl** Rydberg atoms leads to their ionization, and thus their appearance in the Br(+) and Cl(+) fragment ion images.     

The synthesis of a novel cyclo-Se3-bridged trinuclear Ru complex

The reaction of [[RuCl[P(OCH3)3]2]2(mu-Se2)(mu-Cl)2] with four equivalents of NaPF6 gave [[Ru[P(OCH3)3]2(CH3CN)3]2(mu-Se2)](PF6)3 and [[Ru[P(OCH3)3]2(CH3CN)(mu-Cl)]2(mu-cyclo-Se3)[Ru[P(OCH3)3]2(CH3CN)3]](PF6)4. The former is a Ru(II) Ru(III) mixed-valent paramagnetic compound. The X-ray structural analysis of the latter compound revealed that it has a novel mu-cyclo-Se3 neutral ligand and three Ru(II) atoms.     

Correspondence of Ru(III) Ru(II) and Ru(IV) Ru(III) mixed valent states in a small dinuclear complex

The diruthenium(III) compound [(μ-oxa){Ru(acac)(2)}(2)] [1, oxa(2-) =oxamidato(2-), acac(-) =2,4-pentanedionato] exhibits an S=1 ground state with antiferromagnetic spin-spin coupling (J=-40 cm(-1)). The molecular structure in the crystal of 1?2 C(7)H(8) revealed an intramolecular metal-metal distance of 5.433 ? and a notable asymmetry within the bridging ligand. Cyclic voltammetry and spectroelectrochemistry (EPR, UV/Vis/NIR) of the two-step reduction and of the two-step oxidation (irreversible second step) produced monocation and monoanion intermediates (K(c) =10(5.9)) with broad NIR absorption bands (ε ca. 2000 M(-1)cm(-1)) and maxima at 1800 (1(-)) and 1500 nm (1(+)). TD-DFT calculations support a Ru(III)Ru(II) formulation for 1(-) with a doublet ground state. The 1(+) ion (Ru(IV)Ru(III)) was calculated with an S=3/2 ground state and the doublet state higher in energy (ΔE=694.6 cm(-1)). The Mulliken spin density calculations showed little participation of the ligand bridge in the spin accommodation for all paramagnetic species [(μ-oxa){Ru(acac)(2)}(2)](n), n=+1, 0, -1, and, accordingly, the NIR absorptions were identified as metal-to-metal (intervalence) charge transfers. Whereas only one such NIR band was observed for the Ru(III)Ru(II) (4d(5)/4d(6)) system 1(-), the Ru(IV)Ru(III) (4d(4)/4d(5)) form 1(+) exhibited extended absorbance over the UV/Vis/NIR range.