Spodium Bonds: Noncovalent Interactions Involving Group 12 Elements

The term spodium (Sp) bond is proposed to refer to a net attractive interaction between any element of Group 12 and electron‐rich atoms (Lewis bases or anions). These noncovalent interactions are markedly different from coordination bonds (antibonding Sp–ligand orbital involved). Evidence is provided for the existence of this interaction by calculations at the RI‐MP2/aug‐cc‐pVTZ level of theory, atoms‐in‐molecules, and natural bond orbital analyses and by examining solid‐state structures in the Cambridge Structure Database.     

Guest‐Induced Transformation of a Porphyrin‐Edged FeII4L6 Capsule into a CuIFeII2L4 Fullerene Receptor

The combination of a bent diamino(nickel(II) porphyrin) with 2‐formylpyridine and Fe^II yielded an Fe^II₄L₆ cage. Upon treatment with the fullerenes C₆₀ or C₇₀, this cage was found to transform into a new host–guest complex incorporating three Fe^II centers and four porphyrin ligands, in an arrangement that is hypothesized to maximize π interactions between the porphyrin units of the host and the fullerene guest bound within its central cavity. The new complex shows coordinative unsaturation at one of the Fe^II centers as the result of the incommensurate metal‐to‐ligand ratio, which enabled the preparation of a heterometallic cone‐shaped Cu^IFe^II₂L₄ adduct of C₆₀ or C₇₀.     

Spatial,Hysteretic, and Adaptive Host–Guest Chemistry in a Metal–Organic Framework with Open Watson–Crick Sites

Biological and artificial molecules and assemblies capable of supramolecular recognition, especially those with nucleobase pairing, usually rely on autonomous or collective binding to function. Advanced site‐specific recognition takes advantage of cooperative spatial effects, as in local folding in protein–DNA binding. Herein, we report a new nucleobase‐tagged metal–organic framework (MOF), namely ZnBTCA (BTC=benzene‐1,3,5‐tricarboxyl, A=adenine), in which the exposed Watson–Crick faces of adenine residues are immobilized periodically on the interior crystalline surface. Systematic control experiments demonstrated the cooperation of the open Watson–Crick sites and spatial effects within the nanopores, and thermodynamic and kinetic studies revealed a hysteretic host–guest interaction attributed to mild chemisorption. We further exploited this behavior for adenine–thymine binding within the constrained pores, and a globally adaptive response of the MOF host was observed.     

Accuracy of geometries: influence of basis set,exchange–correlation potential,inclusion of core electrons,and relativistic corrections

The geometries of a set of small molecules were optimized using eight different exchange–correlation (xc) potentials in a few different basis sets of Slater-type orbitals, ranging from a minimal basis (I) to a triple-zeta valence basis plus double polarization functions (VII). This enables a comparison of the accuracy of the xc potentials in a certain basis set, which can be related to the accuracies of wavefunction-based methods such as Hartree–Fock and coupled cluster. Four different checks are done on the accuracy by looking at the mean error, standard deviation, mean absolute error and maximum error. It is shown that the mean absolute error decreases with increasing basis set size, and reaches a basis set limit at basis VI. With this basis set, the mean absolute errors of the xc potentials are of the order of 0.7–1.3 pm. This is comparable to the accuracy obtained with CCSD and MP2/MP3 methods, but is still larger than the accuracy of the CCSD(T) method (0.2 pm). The best performing xc potentials are found to be Becke–Perdew, PBE and PW91, which perform as well as the hybrid B3LYP potential. In the second part of this paper, we report the optimization of the geometries of five metallocenes with the same potentials and basis sets, either in a nonrelativistic or a scalar relativistic calculation using the zeroth-order regular approximation approach. For the first-row transition-metal complexes, the relativistic corrections have a negligible effect on the optimized structures, but for ruthenocene they improve the optimized Ru–ring distance by some 1.4–2.2 pm. In the largest basis set used, the absolute mean error is again of the order of 1.0 pm. As the wavefunction-based methods either give a poor performance for metallocenes (Hartree–Fock, MP2), or the size of the system makes a treatment with accurate methods such as CCSD(T) in a reasonable basis set cumbersome, the good performance of density functional theory calculations for these molecules is very promising; even more so as density functional theory is an efficient method that can be used without problems on systems of this size, or larger.     

Theoretical Characterization of Charge Transport in One‐Dimensional Collinear Arrays of Organic Conjugated Molecules

A great deal of interest has recently focused on host–guest systems consisting of one‐dimensional collinear arrays of conjugated molecules encapsulated in the channels of organic or inorganic matrices. Such architectures allow for controlled charge and energy migration processes between the interacting guest molecules and are thus attractive in the field of organic electronics. In this context, we characterize here at a quantum‐chemical level the molecular parameters governing charge transport in the hopping regime in 1D arrays built with different types of molecules. We investigate the influence of several parameters (such as the symmetry of the molecule, the presence of terminal substituents, and the molecular size) and define on that basis the molecular features required to maximize the charge carrier mobility within the channels. In particular, we demonstrate that a strong localization of the molecular orbitals in push–pull compounds is generally detrimental to the charge transport properties.     

A Bioorthogonal Click Chemistry Toolbox for Targeted Synthesis of Branched and Well‐Defined Protein–Protein Conjugates

Bioorthogonal chemistry holds great potential to generate difficult‐to‐access protein–protein conjugate architectures. Current applications are hampered by challenging protein expression systems, slow conjugation chemistry, use of undesirable catalysts, or often do not result in quantitative product formation. Here we present a highly efficient technology for protein functionalization with commonly used bioorthogonal motifs for Diels–Alder cycloaddition with inverse electron demand (DA_inv). With the aim of precisely generating branched protein chimeras, we systematically assessed the reactivity, stability and side product formation of various bioorthogonal chemistries directly at the protein level. We demonstrate the efficiency and versatility of our conjugation platform using different functional proteins and the therapeutic antibody trastuzumab. This technology enables fast and routine access to tailored and hitherto inaccessible protein chimeras useful for a variety of scientific disciplines. We expect our work to substantially enhance antibody applications such as immunodetection and protein toxin‐based targeted cancer therapies.     

Self‐Templating and In Situ Assembly of a Cubic Cluster‐of‐Clusters Architecture Based on a {Mo24Fe12} Inorganic Macrocycle

Engineering self‐templating inorganic architectures is critical for the development of bottom‐up approaches to nanoscience, but systems with a hierarchy of templates are elusive. Herein we describe that the cluster‐anion‐templated (CAT) assembly of a {CAT}?{Mo₂₄Fe₁₂} macrocycle forms a giant ca. 220 nm³ unit cell containing 16 macrocycles clustered into eight face‐shared tetrahedral cluster‐of‐clusters assemblies. We show that {CAT}?{Mo₂₄Fe₁₂} with different CATs gives the compounds 1 – 4 for CAT=Anderson {FeMo₆} ( 1 ), Keggin {PMo₁₂} ( 2 ), Dawson {P₂W₁₈} ( 3 ), and {Mo₁₂O₃₆(HPO₃)₂} ( 4 ) polyoxometalates. “Template‐free” assembly can be achieved, whereby the macrocycle components can also form a template in situ allowing template to macrocycle to superstructure formation and the ability to exchange the templates. Furthermore, the transformation of template clusters within the inorganic macrocycle {Mo₂₄Fe₁₂} allows the self‐generation of an uncapped {Mo₁₂O₃₆(HPO₃)₂} in compound 4 .     

Prismarene: An Emerging Naphthol‐Based Macrocyclic Arene

Phenol‐based macrocyclic arenes have been widely used in supramolecular chemistry, significantly enriching the toolbox of the field. In contrast, naphthol‐based macrocyclic arenes are rather underdeveloped. Very recently, Gaeta and co‐workers successfully synthesized such macrocycles (referred to as prism[n]arenes) with good guest‐binding ability by reacting 2,6‐dimethoxynaphthalene with paraformaldehyde under optimized conditions. In view of the simple synthesis and good host–guest chemistry, we anticipate that this macrocycle will find similar success and wide applications as the phenol‐based macrocyclic arenes.     

Stabilizing and Organizing Bi3Cu4 and Bi7Cu12 Nanoclusters in Two‐Dimensional Metal–Organic Networks

Multinuclear heterometallic nanoclusters with controllable stoichiometry and structure are anticipated to possess promising catalytic, magnetic, and optical properties. Heterometallic nanoclusters with precise stoichiometry of Bi₃Cu₄ and Bi₇Cu₁₂ can be stabilized in the scaffold of two‐dimensional metal–organic networks on a Cu(111) surface through on‐surface metallosupramolecular self‐assembly processes. The atomic structures of the nanoclusters were resolved using scanning tunneling microscopy and density functional theory calculations. The nanoclusters feature highly symmetric planar hexagonal shapes and core–shell charge modulation. The clusters are arranged as triangular lattices with a periodicity that can be tuned by choosing molecules of different size. This work shows that on‐surface metallosupramolecular self‐assembly creates unique possibilities for the design and synthesis of multinuclear heterometallic nanoclusters.     

Molecular Recognition with Model Systems

How structures fit together is the principal domain of molecular recognition, and current studies are evolving from the host–guest chemistry of ions to interactions between two molecules. Recent advances in the synthesis of sizable concave molecules, especially those featuring convergent functional groups, make it possible to bind smaller convex structures with considerable selectivity. One result is that hydrogen bonding can be addressed in model systems. The present review emphasizes the use of cleftlike structures as a means of probing the forces involved in nucleic acid recognition. The application of such molecules to the catalysis of chemical reactions, particularly those involved in self-replicating systems, is also described. Some implications for future pharmaceutical agents are suggested as a result of access to synthetic receptors for biologically relevant targets.     

Cyclodextrin‐Based Supramolecular Assemblies and Hydrogels: Recent Advances and Future Perspectives

The application of cyclodextrin (CD)‐based host–guest interactions towards the fabrication of functional supramolecular assemblies and hydrogels is of particular interest in the field of biomedicine. However, as of late they have found new applications as advanced functional materials (e.g., actuators and self‐healing materials), which have renewed interest across a wide range of fields. Advanced supramolecular materials synthesized using this noncovalent interaction, exhibit specificity and reversibility, which can be used to impart reversible cross‐linking, specific binding sites, and functionality. In this review, various functional CD‐based supramolecular assemblies and hydrogels will be outlined with the focus on recent advances. In addition, an outlook will be provided on the direction of this rapidly developing field.

     

Elementary Processes at Gas/Metal Interfaces

Recent years have seen the development of several physical methods for the study of solid surfaces under ultrahigh vacuum conditions, of which the most important are discussed in this progress report. Contemporary views of the chemisorption bond and the factors affecting it are discussed against the background of the adsorption of hydrogen and of carbon monoxide on single crystal surfaces of face-centered cubic transition metals. Catalytic oxidation of CO over palladium and the interaction of oxygen with nickel serve as examples of chemical surface reactions.     

CO2 Methanation via Amino Alcohol Relay Molecules Employing a Ruthenium Nanoparticle/Metal Organic Framework Catalyst

Methanation of carbon dioxide (CO₂) is attractive within the context of a renewable energy refinery. Herein, we report an indirect methanation method that harnesses amino alcohols as relay molecules in combination with a catalyst comprising ruthenium nanoparticles (NPs) immobilized on a Lewis acidic and robust metal–organic framework (MOF). The Ru NPs are well dispersed on the surface of the MOF crystals and have a narrow size distribution. The catalyst efficiently transforms amino alcohols to oxazolidinones (upon reaction with CO₂) and then to methane (upon reaction with hydrogen), simultaneously regenerating the amino alcohol relay molecule. This protocol provides a sustainable, indirect way for CO₂ methanation as the process can be repeated multiple times.