Microwave spectrum, conformational composition, and intramolecular hydrogen bonding of (2-chloroethyl)amine (ClCH2CH2NH2)

The microwave spectrum of (2-chloroethyl)amine, ClCH(2)CH(2)NH(2), has been investigated in the 22-120 GHz region. Five rotameric forms are possible for this compound. In two of these conformers, denoted I and II, the Cl-C-C-N chain of atoms is antiperiplanar, with different orientations of the amino group. The link of the said atoms is synclinal in the three remaining forms, III-V, which differ with respect to the orientation of the amino group. The microwave spectra of four of these conformers, I-IV, have been assigned. In two of these rotamers, III and IV, the amino group is oriented in such a manner that rare and weak five-membered N-H···Cl intramolecular hydrogen bonds are formed. The geometries of conformers I and II preclude a stabilization by this interaction. The energy differences between the conformers were obtained from relative intensity measurements of spectral lines. The hydrogen-bonded conformer IV represents the global energy minimum. This rotamer is 0.3(7) kJ/mol more stable than the other hydrogen-bonded conformer III, 4.1(11) kJ/mol more stable than II, and 5.5(15) kJ/mol more stable than I. The spectroscopic work has been augmented by quantum chemical calculations at the CCSD/cc-pVTZ and MP2/6-311++G(3df,3pd) levels of theory. The CCSD rotational constants and energy differences are in good agreement with their experimental counterparts.     

Comparison between CH3(CH2)15SH and CF3(CF2)3(CH2)11SH monolayers on electrodeposited silver

In this paper, two monolayers self-assembled on a silver substrate are compared: a monolayer of n-hexadecanethiol and a monolayer of n-11-perfluorobutylundecanethiol. The protecting properties of both monolayers have been extensively studied by X-ray photoelectron spectroscopy, contact angle, polarization modulation infrared reflection absorption spectroscopy, conventional electrochemical techniques (polarization curves and electrochemical impedance spectroscopy), and scanning vibrating electrode technique. Both monolayers were successfully self-assembled but organization is slightly different, the fluorinated segment introduces small disorganization. Nevertheless, good homogeneous corrosion protection is observed for each monolayer.     

Microwave spectrum,conformation, intramolecular hydrogen bond,and dipole moment of pyrrole-2-carboxaldehyde

Microwave spectra of C₄H₃NH-CHO, C₄H₃ND-CHO, and C₄H₃NH-CH¹⁸O are reported. The stable form of the molecule is demonstrated to be planar with the N-H and C-O bonds in a cis conformation. Other forms of the molecule are at least 1 kcal mol^?1 less stable. The H(1) · O distance is 2.592±0.006 Å. Six vibrationally excited states were attributed to the C-C torsional mode, the symmetrical, and the antisymmetrical aldehyde group deformation vibrations. Relative intensity measurements yielded 151±11 cm^?1, for the first frequency, 210±17 cm^?1 for the second, and 270±38 cm^?1 for the last mode. The dipole moment was determined to be μ_a = 2.47 ±0.02 D, μ_b = 0.16±0.06 D, and μ_tot = 2.48 ±0.02 D, respectively.     

NMR spectra of oriented 2,2,2-trifluoroethanol (CF3CH2OH)

Photolysis of hydrogen sulphide in argon, nitrogen and carbon monoxide matrices at 20 K produces HS radicals and S atoms. On warming the matrix, H₂S₂ and S₂ molecules are formed as a result of recombination reactions. The latter are identified by a blue-purple emission observed during warm-up of the matrix.     

Rate constants for the reactions of OH radicals with CH3OCF2CF3, CH3OCF2CF2CF3, and CH3OCF(CF3)2

The rate constants for the reactions of OH radicals with CH₃OCF₂CF₃, CH₃OCF₂CF₂CF₃, and CH₃OCF(CF₃)₂ have been measured over the temperature range 250–430 K. Kinetic measurements have been carried out using the flash photolysis, laser photolysis, and discharge flow methods combined respectively with the laser induced fluorescence technique. The influence of impurities in the samples was investigated by using gas‐chromatography. The following Arrhenius expressions were determined: k(CH₃OCF₂CF₃) = (1.90) × 10⁻¹² exp[−(1510 ± 120)/T], k(CH₃OCF₂CF₂CF₃) = (2.06) × 10⁻¹² exp[−(1540 ± 80)/T], and k(CH₃OCF(CF₃)₂) = (1.94) × 10⁻¹² exp[−(1450 ± 70)/T] cm³ molecule⁻¹ s⁻¹. © 1999 John Wiley & Sons, Inc. Int J Chem Kinet 31: 846–853, 1999     

Microwave spectrum of 3-butyne-1-thiol: evidence for intramolecular S-H...pi hydrogen bonding

The microwave spectrum of 3-butyne-1-thiol has been studied by means of Stark-modulation microwave spectroscopy and quantum-chemical calculations employing the B3LYP/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, MP2/6-311++G(3df,2pd), and G3 methods. Rotational transitions attributable to two conformers of this molecule were assigned. One of these conformers possesses an antiperiplanar arrangement of the atoms S-C1-C2-C3, while the other is synclinal and stabilized by the formation of an intramolecular hydrogen bond between the H-atom of the thiol group and the pi-electrons of the C[triple bond]C triple bond. The energy difference between these conformers was estimated to be 1.7(4) kJ mol(-1) by relative intensity measurements, with the hydrogen-bonded conformer being lower in energy. The spectra of five vibrationally excited states of the synclinal conformer were observed, and an assignment of these states to particular vibrational modes was made with the aid of a density functional theory (DFT) calculation of the vibrational frequencies at the B3LYP/6-311++G(3df,2pd) level of theory.     

Kinetic study of the reactions of Cl atoms with CF3CH2CH2OH, CF3CF2CH2OH, CHF2CF2CH2OH, and CF3CHFCF2CH2OH

The reaction kinetics of chlorine atoms with a series of partially fluorinated straight-chain alcohols, CF(3)CH(2)CH(2)OH (1), CF(3)CF(2)CH(2)OH (2), CHF(2)CF(2)CH(2)OH (3), and CF(3)CHFCF(2)CH(2)OH (4), were studied in the gas phase over the temperature range of 273-363 K by using very low-pressure reactor mass spectrometry. The absolute rate coefficients were given by the expressions (in cm(3) molecule(-1) s(-1)): k(1) = (4.42 +/- 0.48) x 10(-11) exp(-255 +/- 20/T); k(1)(303) = (1.90 +/- 0.17) x 10(-11), k(2) = (2.23 +/- 0.31) x 10(-11) exp(-1065 +/- 106/ T); k(2)(303) = (6.78 +/- 0.63) x 10(-13), k(3) = (8.51 +/- 0.62) x 10(-12) exp(-681 +/- 72/T); k(3)(303) = (9.00 +/- 0.82) x 10(-13) and k(4) = (6.18 +/- 0.84) x 10(-12) exp(-736 +/- 42/T); k(4)(303) = (5.36 +/- 0.51) x 10(-13). The quoted 2sigma uncertainties include the systematic errors. All title reactions proceed via a hydrogen atom metathesis mechanism leading to HCl. Moreover, the oxidation of the primarily produced radicals was investigated, and the end products were the corresponding aldehydes (R(F)-CHO; R(F) = -CH(2)CF(3), -CF(2)CF(3), -CF(2)CHF(2), and -CF(2)CHFCF(3)), providing a strong experimental indication that the primary reactions proceed mainly via the abstraction of a methylenic hydrogen adjacent to a hydroxyl group. Finally, the bond strengths and ionization potentials for the title compounds were determined by density functional theory calculations, which also suggest that the alpha-methylenic hydrogen is mainly under abstraction by Cl atoms. The correlation of room-temperature rate coefficients with ionization potentials for a set of 27 molecules, comprising fluorinated C2-C5 ethers and C2-C4 alcohols, is good with an average deviation of a factor of 2, and is given by the expression log(k) (in cm(3) molecule(-1) s(-1)) = (5.8 +/- 1.4) - (1.56 +/- 0.13) x (ionization potential (in eV)).     

Energetics of the O-H bond and of intramolecular hydrogen bonding in HOC6H4C(O)Y (Y = H, CH3, CH2CH=CH2, C[triple bond]CH, CH2F, NH2, NHCH3, NO2, OH, OCH3, OCN, CN, F, Cl, SH, and SCH3) compounds

The energetics of the phenolic O-H bond in a series of 2- and 4-HOC 6H 4C(O)Y (Y = H, CH3, CH 2CH=CH2, C[triple bond]CH, CH2F, NH2, NHCH 3, NO2, OH, OCH3, OCN, CN, F, Cl, SH, and SCH3) compounds and of the intramolecular O...H hydrogen bond in 2-HOC 6H 4C(O)Y, was investigated by using a combination of experimental and theoretical methods. The standard molar enthalpies of formation of 2-hydroxybenzaldehyde (2HBA), 4-hydroxybenzaldehyde (4HBA), 2'-hydroxyacetophenone (2HAP), 2-hydroxybenzamide (2HBM), and 4-hydroxybenzamide (4HBM), at 298.15 K, were determined by micro- or macrocombustion calorimetry. The corresponding enthalpies of vaporization or sublimation were also measured by Calvet drop-calorimetry and Knudsen effusion measurements. The combination of the obtained experimental data led to Delta f H m (o)(2HBA, g) = -238.3 +/- 2.5 kJ.mol (-1), DeltafHm(o)(4HBA, g) = -220.3 +/- 2.0 kJ.mol(-1), Delta f H m (o)(2HAP, g) = -291.8 +/- 2.1 kJ.mol(-1), DeltafHm(o)(2HBM, g) = -304.8 +/- 1.5 kJ.mol (-1), and DeltafHm(o) (4HBM, g) = -278.4 +/- 2.4 kJ.mol (-1). These values, were used to assess the predictions of the B3LYP/6-31G(d,p), B3LYP/6-311+G(d,p), B3LYP/aug-cc-pVDZ, B3P86/6-31G(d,p), B3P86/6-311+G(d,p), B3P86/aug-cc-pVDZ, and CBS-QB3 methods, for the enthalpies of a series of isodesmic gas phase reactions. In general, the CBS-QB3 method was able to reproduce the experimental enthalpies of reaction within their uncertainties. The B3LYP/6-311+G(d,p) method, with a slightly poorer accuracy than the CBS-QB3 approach, achieved the best performance of the tested DFT models. It was further used to analyze the trends of the intramolecular O...H hydrogen bond in 2-HOC 6H 4C(O)Y evaluated by the ortho-para method and to compare the energetics of the phenolic O-H bond in 2- and 4-HOC 6H 4C(O)Y compounds. It was concluded that the O-H bond "strength" is systematically larger for 2-hydroxybenzoyl than for the corresponding 4-hydroxybenzoyl isomers mainly due to the presence of the intramolecular O...H hydrogen bond in the 2-isomers. The observed differences are, however, significantly dependent on the nature of the substituent Y, in particular, when an intramolecular H-bond can be present in the radical obtained upon cleavage of the O-H bond.     

Microwave spectrum and conformational composition of 3-fluoropropionitrile (FCH2CH2CN)

The microwave spectrum of 3-fluoropropionitrile, FCH(2)CH(2)C≡N, has been investigated in the whole 17-75 GHz spectral region. Selected portions of the spectrum in the 75-95 GHz have also been recorded. The microwave spectra of the ground state as well as of three vibrationally excited states of each of two conformers have been assigned. The spectra of the vibrationally excited states belong to the lowest torsional and bending vibrations. The F-C-C-C chain of atoms is exactly antiperiplanar in one of these rotamers and synclinal in the second conformer. The F-C-C-C dihedral angle is 65(2)° in the synclinal form. The energy difference between the two forms has been obtained from relative intensity measurements performed on microwave transitions. It was found that the antiperiplanar conformer is more stable than the synclinal form by 1.4(5) kJ/mol. It is argued that the gauche effect is a significant force in this compound. Quantum chemical calculations at the high CCSD(full)/cc-pVTZ, MP2(full)/cc-pVTZ, and B3LYP/cc-pVTZ levels of theory have been performed. Most, but not all, of the theoretical predictions are in good agreement with experiment.     

Dependence of glycine CH2 stretching frequencies on conformation, ionization state, and hydrogen bonding

We experimentally and theoretically examined the conformation, pH, and temperature dependence of the CH2 stretching frequencies of glycine (gly) in solution and in the crystalline state. To separate the effects of the amine and carboxyl groups on the CH2 stretching frequencies we examined the Raman spectra of 2,2,2-d3-ethylamine (CD3-CH2-NH2) and 3,3,3-d3-propionic acid (CD3-CH2-COOH) in D2O. The symmetric (nusCH2) and asymmetric (nuasCH2) stretching frequencies show a significant dependence on gly conformation. We quantified the relation between the frequency splitting (Delta = nuasCH2-nusCH2) and the xi angle which determines the gly conformational geometry. This relation allows us to determine the conformation of gly directly from the Raman spectral frequencies. We observe a large dependence of the nusCH2 and nuasCH2 frequencies on the ionization state of the amine group, which we demonstrate theoretically results from a negative hyperconjugation between the nitrogen lone pair and the C-H antibonding orbitals. The magnitude of this effect is maximized for C-H bonds trans to the nitrogen lone pair. In contrast, a small dependence of the CH2 stretching frequencies on the carboxyl group ionization state arises from delocalization of electron density from carboxyl oxygen to C-H bonding orbitals. According to our experimental observations and theoretical calculations the temperature dependence of the nusCH2 and nuasCH2 of gly is due to the change in the hydrogen-bonding strength of the amine/carboxyl groups to water.     

Kinetics of Cl(2P) reactions with CF3CHCl2, CF3CHFCl,and CH3CFCl2

The rate coefficients for the removal of Cl atoms by reaction with three HCFCs, CF₃CHCl₂ (HCFC-123), CF₃CHFCl (HCFC-124), and CH₃CFCl₂ (HCFC 141b), were measured as a function of temperature between 276 and 397 K. CH₃CF₂Cl (HCFC-142b) was studied only at 298 K. The Arrhenius expressions obtained are: k₁ = (3.94 ± 0.84)× 10^?12 exp[?(1740 ± 100)/T] cm³ molecule^?1 s^?1 for CF₃CHCl₂ (HCFC 123); k₂ = (1.16 ± 0.41) × 10^?12 exp[?(1800 ± 150)/T] cm³ molecule^?1 s^?1 for CF₃CHFCl (HCFC 124); and k₃ = (1.6 ± 1.1) × 10^?12 exp[?(1800 ± 500)/T] cm³ molecule^?1 s^?1 for CH₃CFCl₂ (HCFC 141b). In case of HCFC 141b, non-Arrhenius behavior was observed at temperatures above ca. 350 K and is attributed to the thermal decomposition of CH₂CFCl₂ product into Cl + CH₂CFCl. In case of HCFC-142b, only an upper limit for the 298 K value of the rate coefficient was obtained. The atmospheric significance of these results are discussed. © 1993 John Wiley & Sons, Inc.     

A kinetic study of the reaction of fluorine atoms with CH3F,CH3Cl,CH3Br,CF2H2, CO,CF3H,CF3CHCl2, CF3CH2F,CHF2CHF2, CF2ClCH3, CHF2CH3, and CF3CF2H at 295 ± 2 K

A variety of relative and absolute techniques have been used to measure the reactivity of fluorine atoms with a series of halogenated organic compounds and CO. The following rate constants were derived, in units of cm³ molecule^?1 s^?1: CH₃F, (3.7 ± 0.8) × 10^?11, CH₃Cl, (3.3 ± 0.7) × 10^?11; CH₃Br, (3.0 ± 0.7) × 10^?11; CF₂H₂, (4.3 ± 0.9) × 10^?12; CO, (5.5 ± 1.0) × 10^?13 (in 700 torr total pressure of N₂ diluent); CF₃H, (1.4 ± 0.4) × 10^?13; CF₃CCl₂H (HCFC-123), (1.2 ± 0.4) × 10^?12; CF₃CFH₂ (HFC-134a), (1.3 ± 0.3) × 10^?12, CHF₂CHF₂ (HFC-134), (1.0 ± 0.3) × 10^?12; CF₂ClCH₃ (HCFC-42b), (3.9 ± 0.9) × 10^?12, CF₂HCH₃ (HFC-152a), (1.7 ± 0.4) × 10^?11; and CF₃CF₂H (HFC-125), (3.5 ± 0.8) × 10^?13. Quoted errors are statistical uncertainties (2σ). For rate constants derived using relative rate techniques, an additional uncertainty has been added to account for potential systematic errors in the reference rate constants used. Experiments were performed at 295 ± 2 K. Results are discussed with respect to the previous literature data and to the interpretation of laboratory studies of the atmospheric chemistry of HCFCs and HFCs. © 1993 John Wiley & Sons, Inc.     

Kinetics of gas‐phase reactions of CH3OCH2CF3, CH3OCH3, CH3OCH2CH3, CH3CH2OCH2CH3, and CHF2CF2OCH2CF3 with NO3 radicals at 298 K

Rate constants for the gas‐phase reactions of CH₃OCH₂CF₃ (k₁), CH₃OCH₃ (k₂), CH₃OCH₂CH₃ (k₃), and CH₃CH₂OCH₂CH₃ (k₄) with NO₃ radicals were determined by means of a relative rate method at 298 K. NO₃ radicals were prepared by thermal decomposition of N₂O₅ in a 700–750 Torr N₂O₅/NO₂/NO₃/air gas mixture in a 1‐m³ temperature‐controlled chamber. The measured rate constants at 298 K were k₁ = (5.3 ± 0.9) × 10^?18, k₂ = (1.07 ± 0.10) × 10^?16, k₃ = (7.81 ± 0.36) × 10^?16, and k₄ = (2.80 ± 0.10) × 10^?15 cm³ molecule^?1 s^?1. Potential energy surfaces for the NO₃ radical reactions were computationally explored, and the rate constants of k₁–k₅ were calculated according to the transition state theory. The calculated values of rate constants k₁–k₄ were in reasonable agreement with the experimentally determined values. The calculated value of k₅ was compared with the estimate (k₅ < 5.3 × 10^?21 cm³ molecule^?1 s^?1) derived from the correlation between the rate constants for reactions with NO₃ radicals (k₁–k₄) and the corresponding rate constants for reactions with OH radicals. We estimated the tropospheric lifetimes of CH₃OCH₂CF₃ and CHF₂CF₂OCH₂CF₃ to be 240 and >2.4 × 10⁵ years, respectively, with respect to reaction with NO₃ radicals. The tropospheric lifetimes of these compounds are much shorter with respect to the OH reaction. © 2009 Wiley Periodicals, Inc. Int J Chem Kinet 41: 490–497, 2009     

FTIR spectra of HSCH2CH2SH,CH3SCH2SH,and CH3SSCH3 in argon and nitrogen matrices

Matrix-isolated IR spectra of 1,2-ethanedithiol, (methylthio)methanethiol, and dimethyldisulfide were recorded from 400 to 4000 cm⁻¹ in argon and nitrogen matrices at 12 K. The appearances of new bands around the vibrations of the monomers provide evidence for the presence of dimer and multimers of 1,2-ethanedithiol and (methythio)methanethiol in argon and nitrogen matrices. The co-existence of two different dimers of (methylthio)methanethiol in nitrogen matrices is considered on the basis of the experimental data. The spectroscopic data confirm the presence of one gauche and one trans conformer for 1,2-ethanedithiol and at least three conformers for (methylthio)methanethiol, but only one gauche form for dimethyl disulfide in the matrices.     

Microwave spectrum,conformation, intramolecular hydrogen bond,dipole moment, 14N quadrupole coupling constants and centrifugal distortion of 2flu

Microwave spectra of CH₂FCONH₂, CH₂FCOND(1)H(2), CH₂FCONH-(1)D(2), and CH₂FCOND₂ are reported. The stable form of the molecule is shown to possess a planar FCCONH₂ skeleton, with two out-of-plane hydrogens. The C-F and CO bonds are trans to one another and a weak intramolecular hydrogen bond is formed between the fluorine atom and the nearest amide group hydrogen atom stabilizing the identified rotamer. Other conformations are not present in concentrations exceeding 10% of the total. Nine vibrationally excited states were assigned. Six of these were attributed to the C-C torsional mode and one to the lowest in-plane bending mode. The first excited state of -NH_z out-of-plane deformation mode was tentatively assigned. Relative intensity measurements yielded 114±14 cm^?1 for C-C torsional mode and 239±20 cm^?1 for the in-plane bending mode. The dipole moment was determined asμ_a = 1.27±0.01 D, μ_b = 1.67±0.02 D, and μ_tot = 2.10±0.02 D, while the ¹⁴N quadrupole coupling constants were found to be χ_aa = 1.6±0.2 MHz, χ_bb = 1.6±0.2 MHz and χ_cc = ?3.2±0.3 MHz.     

(Trifluoromethyl)germanes. Preparation and properties of (CF3)2GeHX (X = H,D, F,Cl, Br,I, CH3) and CF3GeHnX3-n (X = H,D, CF2H,CH3)

The hydrogenation of (CF₃)_nGeX_4-n (X = halogen, n = 1–3) with NaBH₄ in an acidic medium has been investigated. Deuteration with NaBD₄ and D₃PO₄ gave the partially deuterated species CF₃GeH_nD_3-n and (CF₃)₂GeH_nD_2-n in reasonable isotopic purity. The (CF₃)₂GeHBr was isolated and converted into the halides (CF₃)₂GeHX (X = F, Cl, I) by treatment with AgX or HX. Insertion of CF₂ into a GeH bond has been observed, and (CF₃)(CF₂H)GeH₂ has been characterized. Direct alkylation of GeH bonds was brought about by reaction with a mixture of RI and R′₂Zn (R, R′= CH₃, C₂H₅), and the methyl(trif]uoromethyl)germanes CF₃GeH₂(CH₃), CF₃GeH(CH₃)₂ and (CF₃)₂GeH(CH₃) were isolated. For R = CD₃, R′ = CH₃ the product distribution can be accounted in terms of two competing mechanisms.     

Surface bonding and dynamical behavior of the CH3SH molecule on Au(111)

The chemisorption of the undissociated CH3SH molecule on the Au(111) surface has been studied at 5 K using scanning tunneling microscopy (STM) and density functional theory (DFT) calculations. The molecule was found to adsorb on atop Au sites on the defect-free surface. CH3SH undergoes hindered rotation about the Au-S bond on the defect-free surface which is seen in STM as a time-averaged 6-fold pattern. The pattern suggests that the potential minima directions occur for the rotating molecule at the six hollow sites surrounding the atop adsorption site. The barrier for rotation, obtained by DFT calculations, is approximately 0.1 kcal.mol(-1). At low coverages, preferential adsorption occurs at defect sites in the surface, namely, the herringbone "elbows" and random atomic step sites. Molecules adsorbed on these sites do not exhibit rotational freedom.     

CF3CH(ONO)CF3: Synthesis,IR spectrum,and use as OH radical source for kinetic and mechanistic studies

The synthesis, IR spectrum, and first‐principles characterization of CF₃CH(ONO)CF₃ as well as its use as an OH radical source in kinetic and mechanistic studies are reported. CF₃CH(ONO)CF₃ exists in two conformers corresponding to rotation about the RCO? NO bond. The more prevalent trans conformer accounts for the prominent IR absorption features at frequencies (cm^?1) of 1766 (N?O stretch), 1302, 1210, and 1119 (C? F stretches), and 761 (O? N? O bend); the cis conformer contributes a number of distinct weaker features. CF₃CH(ONO)CF₃ was readily photolyzed using fluorescent blacklamps to generate CF₃C(O)CF₃ and, by implication, OH radicals in 100% yield. CF₃CH(ONO)CF₃ photolysis is a convenient source of OH radicals in the studies of the yields of CO, CO₂, HCHO, and HC(O)OH products which can be difficult to measure using more conventional OH radical sources (e.g., CH₃ONO photolysis). CF₃CH(ONO)CF₃ photolysis was used to measure k(OH + C₂H₄)/k(OH + C₃H₆) = 0.29 ± 0.01 and to establish upper limits of 16 and 6% for the molar yields of CO and HC(O)OH from the reaction of OH radicals with benzene in 700 Torr of air at 296 K. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 159–165, 2003