Synthetic training sets for the development of discriminant functions for the detection of volatile organic compounds from passive infrared remote sensing data

A novel synthetic data generation methodology is described for use in the development of pattern recognition classifiers that are employed for the automated detection of volatile organic compounds (VOCs) during infrared remote sensing measurements. The approach used is passive Fourier transform infrared spectrometry implemented in a downward-looking mode on an aircraft platform. A key issue in developing this methodology in practice is the need for example data that can be used to train the classifiers. To replace the time-consuming and costly collection of training data in the field, this work implements a strategy for taking laboratory analyte spectra and superimposing them on background spectra collected from the air. The resulting synthetic spectra can be used to train the classifiers. This methodology is tested by developing classifiers for ethanol and methanol, two prevalent VOCs in wide industrial use. The classifiers are successfully tested with data collected from the aircraft during controlled releases of ethanol and during a methanol release from an industrial facility. For both ethanol and methanol, missed detections in the aircraft data are in the range of 4 to 5%, with false positive detections ranging from 0.1 to 0.3%.     

Towards a deeper understanding of the third millennium BC Iranian metallurgy: Use of synchrotron light for characterizing arsenic-bearing minerals in metal objects from Espidej

New excavations at Espidej at the Kerman Province of the Halil Basin corridor in Iran offer a unique opportunity to reconsider the third millennium BC (i.e. Bronze Age) metallurgical practices related particularly to arsenical copper (Cu-As) alloying and to explore arsenic-bearing raw materials. This paper presents results of optical microscopy and environmental scanning electron microscopy (ESEM) on a selected group of copper-based artefacts from Espidej. Additionally, we have benefited from synchrotron light for further investigations on a dagger sample. The scientific examinations on metal corpora adds new information regarding the microchemistry and production techniques of metals of the south-eastern cultural zone of Iran. Synchrotron micro X-ray diffraction (SR-μXRD) data of the sample demonstrates traces of arsenic-bearing minerals in the corrosion products indicative of types of ores used in alloying processes. Preliminary research on copper ores indicates possible extraction of local ore deposits that were outcropped along the south-east Makran orogeny zone of Iran. This area is part of hydrothermal mineralization zone consisting of arsenopyrite (FeAsS), sinnerite (Cu₆As₄S₉), bornite (Cu₅FeS₄) and algodonite (Cu₆As). Noticeable arsenic-bearing phases within the metallic core of the sample were frequently characterized as sinnerite and algodonite.     

How to use the vibrational data for a better understanding of bonding structure and reactivity of organometallic complexes

The infrared frequency and intensity values of the main vibrational modes of selected examples of hydrocarbon ligands bonded to metals are reported. Despite the approximations on the vibrational analysis, the data offer fundamental information on structure, bonding, and reactivity of the metal-ligand unit, successfully comparable with those obtained by other sources (structural analysis, nmr spectroscopy, MO calculation). A future extension of this topic to the study of the adsorbate surface interaction is proposed, in light of the well-known cluster-surface analogy.     

SPECA: a program for the calculation of thermodynamic equilibrium constants from spectrophotometric data

A computer program called SPECA and written in compiled BASIC (Microsoft QuickBasic Ver. 4.5) has been written for the calculation of thermodynamic constants in solution equilibria studies from spectrophotometric measurements. In order to calculate the thermodynamic constants it is necessary to introduce different theories to estimate the activity coefficients of the system involved under investigation. In this version of the program the equations proposed in the models of Debye-Hückel. Specific Interaction Theory (SIT) or the Modified's Bromley Theory can be chosen. To achieve its purpose, the program uses absorbance and activity or free concentration data of one of the components, normally H(+), and it is not limited with respect to the number of components that can be studied. Minimization of the error square sum in the absorbance, which can be absolute or relative, is carried out using the Levenberg-Marquardt-Nash algorithm at three different levels: equilibrium constants in the first level, molar absorptivities in the second and interaction coefficients in the third for those systems using the SIT or the Modified Bromley's Theories.     

A topological pattern for the understanding of the stability and aromaticity of closo-boranes: constructing closo-borane from nido-boranes

The closo-boranes B _n H _n ^2? (6????n????12) have been constructed topologically by fusing together of the two component nido-boranes B₅H₉ and B₆H₁₀. The stability and aromaticity of the closo-boranes can be regarded as inherited from the two component nido-boranes, and the closo-boranes which can be formed by two same nido-boranes through sharing a ??ring?? fragment or without sharing any BH fragment are more stable than other types of closo-boranes. It can be anticipated that the constructing method of this article can bring enlightment to the structural interpretation process of other systems.     

Chemical composition of the essential oil of aerial parts of Haussknechtia elymaitica Boiss. from Iran: a good natural source for trans-asaron

The chemical composition of the essential oil of Haussknechtia elymaitica Boiss. was investigated by capillary GC and GC/MS for the first time. Twelve components were identified which accounting for 99.7% of the oil composition. The major compounds were trans-asarone (59.9%), trans-methyl isoeugenol (22.4%), α-zingiberene (7.96%), β-sesquiphellandrene (4.7%) and β-bisabolene (4.3%). The first three compounds considered as the main components of the essential oil were isolated and characterised by spectroscopic techniques.     

Atom transfer radical polymerization from nanoparticles: a tool for the preparation of well-defined hybrid nanostructures and for understanding the chemistry of controlled/"living" radical polymerizations from surfaces

Structurally well-defined polymer--nanoparticle hybrids were prepared by modifying the surface of silica nanoparticles with initiators for atom transfer radical polymerization and by using these initiator-modified nanoparticles as macroinitiators. Well-defined polymer chains were grown from the nanoparticle surfaces to yield individual particles composed of a silica core and a well-defined, densely grafted outer polystyrene or poly(methyl methacrylate) layer. In both cases, linear kinetic plots, linear plots of molecular weight (M(n)) versus conversion, increases in hydrodynamic diameter with increasing conversion, and narrow molecular weight distributions (M(w)/M(n)) for the grafted polymer samples were observed. Polymerizations of styrene from smaller (75-nm-diameter) silica nanoparticles exhibited good molecular weight control, while polymerizations of methyl methacrylate (MMA) from the same nanoparticles exhibited good molecular weight control only when a small amount of free initiator was added to the polymerization solution. The difference in polymerization behavior for styrene and MMA was ascribed to the facts that styrene undergoes thermal self-initiation while MMA does not and that termination processes involving freely diffusing chains are faster than those involving surface-bound chains. The polymerizations of both styrene and MMA from larger (300-nm-diameter) silica nanoparticles did not exhibit molecular weight control. This lack of control was ascribed to the very high initial monomer-to-initiator ratio in these polymerizations. Molecular weight control was induced by the addition of a small amount of free initiator to the polymerization but was not induced when 5--15 mol % of deactivator (Cu(II) complex) was added.     

Thermodynamic-kinetic correlations in supercooled liquids: a critical survey of experimental data and predictions of the random first-order transition theory of glasses

Thermodynamics and kinetics are thought to be linked in glass transitions. The quantitative predictions of alpha-relaxation activation barriers provided by the theory of glasses based on random first-order transitions are compared with the experimental results for 44 substances. The agreement found between the predicted activation energies near T(g) and experiment is excellent. These predictions depend on the configurational heat capacity change on vitrification and the entropy of melting the crystal which are experimental inputs.     

Fluorescent and colourimetric 1, 8-naphthalimide-appended chemosensors for the tracking of metal ions: selected examples from the year 2010 to 2017

The global sensing science in the past couple of years has seen brilliant successes in the designs and syntheses of diverse fluorescent and colourimetric chemosensors of ultra-high selectivities and sensitivities for the tracking of metal ions in environmental and biological systems. Amongst the most widely employed fluorophores for the development of fluorescent and colourimetric chemosensors is the 1, 8-naphthalimide fluorophore, which is distinctive due to its possession of outstanding photophysical properties unequalled by other fluorophores. Many reported literatures are replete with employment of 1, 8-naphthalimide as a unique fluorophore for the construction of chemosensors for the monitoring of metal ions (such as Cu²⁺, Hg²⁺, Cr³⁺, Fe³⁺, Zn²⁺, Ag⁺, Pd²⁺, Al³⁺, Ba²⁺, Au³⁺, and Bi²⁺, and/or a combination of any of them) with remarkable results documented from various labs. This review summarises recent advances in the development of representative fluorescent and colourimetric 1, 8-naphthalimide-based chemosensors reported within the past 7 years. It is believed that gaining insights into the various highlighted examples would help to refine our knowledge of the field and pave the way for further advancement in the constructions of fluorescent and colourimetric 1, 8-naphthalimide-based chemosensors of improved sensing parameters and practical application values.     

Chemical composition and antioxidant activity of the essential oil of aerial parts of Petasites albus from Iran: a good natural source of euparin

The chemical composition of the essential oil of Petasites albus (known as 'Baba Adam' in Iran) was investigated by capillary gas chromatography and gas chromatography-mass spectrometry for the first time. Twenty components were identified, accounting for 99.7% of the oil composition. The major compounds were euparin (73%), α-eudesmol (13.2%) and β-selinene (4.5%). Euparin, the main component of the essential oil, was isolated and characterised by spectroscopic techniques. The antioxidant activities of the essential oil and euparin were evaluated by using the 2,2-diphenyl-1-picrylhydrazyl radical scavenging assay and are shown to exhibit a moderate antioxidant activity.     

Chemical composition and anticandidal properties of the essential oil isolated from aerial parts of Cotula cinerea: a rare and threatened medicinal plant in Morocco

The chemical composition and anticandidal properties of the essential oil of Moroccan Cotula cinerea aerial parts have been examined. GC-MS data were used to identify 24 constituents. Oxygenated monoterpenes constituted the main fraction with trans-thujone (41.4%), cis-verbenyl acetate (24.7%), 1,8-cineole (8.2%) and camphor (5.5%) as the major components. The anticandidal activity of the essential oil was evaluated using a panel of human pathogenic fungi (Candida albicans CCMM L4 and CCMM L5, C. krusei CCMM L10, C. glabrata CCMM L7 and C. parapsilosis CCMM L18). The oil showed high anticandidal activity against all investigated strains with minimal inhibitory concentrations of 3.2 to 4.7 mg/mL depending on the tested yeast and 5.9 mg/mL as a minimal candidicidal concentration value. These findings add significant information to the pharmacological activity of Cotula cinerea essential oil, which may present a good alternative to antibiotics for the treatment of resistant strains of Candida.     

Time-course measurements of caffeine and its metabolites extracted from fingertips after coffee intake: a preliminary study for the detection of drugs from fingerprints

The aim of this study was to determine whether an ingested drug and its metabolites could be detected in the subject’s fingerprints. Caffeine (CF) was chosen as the model drug. Three healthy subjects were asked to consume a cup of coffee (ca. 100 mL) containing 80 micro micro mg CF as the total dose, which is the normal amount in one cup of coffee. After washing hands with water to remove external contaminants, each subject pressed the index fingertip to a collecting matrix just before consuming the test cup of coffee, and then again pressed the index fingertip to the collecting matrix after 1, 3, 5, and 7 h. The time curve of the amounts of CF and its metabolites—theobromine (TB), paraxanthine (PX), and theophylline (TP)—in fingerprints and blood was determined using liquid chromatography/tandem mass spectrometry (LC/MS). A filter paper wetted with water (50 μL) was an efficient collecting matrix for extracting the analytes from the fingertip. With optimized sample preparation and LC/MS conditions, the total operating time, from taking the fingerprints to obtaining the analytical result, was approximately 10 min. The lower limits of quantification for CF, TB, PX, and TP were 0.5, 5, 0.5, and 5 ng/fingerprint, respectively. The amount of CF or PX determined in fingerprints obtained over 7 h after coffee intake was significantly greater than the amount determined in fingerprints taken before drinking coffee. Fingerprints were a more efficient source for drug testing than other biological samples, such as blood and sweat, because the procedures for sampling and extracting the drugs were simpler and took less time. The method could be used to prove drug intake in criminal investigations.     

Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the plasma membrane

To gain a better understanding of how monovalent salt under physiological conditions affects plasma membranes, we have performed 200 ns atomic-scale molecular dynamics simulations of phosphatidylcholine (PC) and phosphatidylethanolamine (PE) lipid bilayers. These two systems provide representative models for the outer and inner leaflets of the plasma membrane, respectively. The implications of cation-lipid interactions in these lipid systems have been considered in two different aqueous salt solutions, namely NaCl and KCl, and the sensitivity of the results on the details of interactions used for ions is determined by repeating the simulations with two distinctly different force fields. We demonstrate that the main effect of monovalent salt on a phospholipid membrane is determined by cations binding to the carbonyl region of a membrane, while chloride anions mostly stay in the water phase. It turns out that the strength and character of the cation-lipid interactions are quite different for different types of lipids and cations. PC membranes and Na+ ions demonstrate strongest interactions, leading to notable membrane compression. This finding was confirmed by both force fields (Gromacs and Charmm) employed for the ions. The binding of potassium ions to PC membranes (and the overall effect of KCl), in turn, was found to be much weaker mainly due to the larger size of a K+ ion compared to Na+. Furthermore, the effect of KCl on PC membranes was found to be force-field sensitive: The binding of a potassium ion was not observed at all in simulations performed with the Gromacs force-field, which seems to exaggerate the size of a K+ ion. As far as PE lipid bilayers are concerned, they are found to be influenced by monovalent salt to a significantly lesser extent compared to PC bilayers, which is a direct consequence of the ability of PE lipids to form both intra- and intermolecular hydrogen bonds and hence to adopt a more densely packed bilayer structure. Whereas for NaCl we observed weak binding of Na+ cations to the PE lipid-water interface, in the case of KCl we witnessed almost complete lack of cation binding. Overall, our findings indicate that monovalent salt ions affect lipids in the inner and outer leaflets of plasma cell membranes in substantially different ways.     

Off-line pyrolysis and compound-specific stable carbon isotope analysis of lignin moieties: a new method for determining the fate of lignin residues in soil

Off-line pyrolysis was used to liberate lignin moieties from dung and soil and, after trimethylsilylation, the delta(13)C values of these derivatives were determined by gas chromatography-combustion-isotope ratio mass spectrometry. Initial delta(13)C values determined for 4-vinylphenol, syringol, 4-vinylguaiacol, 4-acetylsyringol, 4-vinylsyringol, 4-(2-Z-propenyl)syringol, 4-(2-E-propenyl)syringol and 4-(2-propenone)syringol pyrolysis products of the lignin polyphenol structure from C(4) (delta(13)C(bulk) = -12.6%) and C(3) (delta(13)C(bulk) = -30.1 per thousand) dung confirmed the robust and reproducible nature of the off-line preparation technique. C(4) dung was used as a treatment in a randomised field experiment to assess the short-term sequestration of dung carbon in managed grasslands. Since lignin was on average 3.5 per thousand depleted in (13)C compared with bulk dung delta(13)C values, this may have resulted in an under-estimation of dung C incorporation based on bulk delta(13)C values. Therefore, an investigation of the compound-specific delta(13)C values of dung-derived lignin moieties extracted from soils sampled up to 372 days was undertaken. Delta(13)C values between lignin moieties extracted from treated and untreated soils showed that dung-derived lignin was not especially resistant to degradation and suggested that individual moieties of the lignin macromolecule must: (i) move into soil, (ii) be degraded, or (iii) be transformed diagenetically at different rates. This adds to a gathering body of evidence that lignin is not particularly stable in soils, which has considerable significance for the perceived role of different biochemical components in the cycling of C in soils.     

Artificial intelligence for the interpretation of combined spectral data : Design and development of a spectrum interpreter

The design of a knowledge-based system for the interpretation of combined spectral data for structure elucidation (EXSPEC) is described. Some basic design features are discussed and the functioning of the knowledge base, inference mechanism and user-interface is outlined. Attention is focussed on the development of a spectrum interpreter for infrared and mass spectral data. Interpretation of spectra for 120 liquid alcohols used for rule generation was successful. The system can be run on a Macintosh II or, more slowly, on a Macintosh Plus.