Use of 157-nm photodissociation to probe structures of y- and b-type ions produced in collision-induced dissociation of peptide ions

y- and b-type fragment ions produced in the collisional dissociation of arginine-terminated peptide ions are photodissociated with 157-nm light in a linear trap. y-type ions are shown to have the same structure as that of intact peptides of the same sequence with the ionizing proton located at the most basic residue(s). For generic b-type ions, the ionizing proton is shown to be sequestered at the N-terminal arginine, which is consistent with the proposed oxazolone structure.     

Time-resolved observation of product ions generated by 157 nm photodissociation of singly protonated phosphopeptides

Vacuum UV photodissociation tandem mass spectra of singly charged arginine-terminated phosphopeptides were recorded at times ranging from 300 ns to ms after photoexcitation, to investigate when the phosphate group falls off from the precursor and product ions and whether loss of phosphate can be eliminated in tandem mass spectra. For peptide ions containing phosphoserine and phosphothreonine, little loss of 98 Da from the product ions was observed up to 1 μs after photoexcitation. However, neutral losses from the precursor ions were considerable just 300 ns after photoactivation. Loss of 98 Da from product ions first appears about 1 μs after laser irradiation and becomes more common 13 μs after photoexcitation. Consistent with previous reports, phosphotyrosine was more stable than either phosphoserine or phosphothreonine.     

Efficiency of collisionally-activated dissociation and 193-nm photodissociation of peptide ions in fourier transform mass spectrometry

For tandem mass spectrometry, the Fourier transform instrument exhibits advantages for the use of collisionally-activated dissociation (CAD). The CAD energy deposited in larger ions can be greatly increased by extending the collision time to as much as 120 s, and the efficiency of trapping and measuring CAD product ions is many times greater than that found for triple-quadrupole or magnetic sector instruments, although the increased pressure from the collision gas is an offsetting disadvantage. A novel system that uses the same laser for photodesorption of ions and their subsequent photodissociation can produce complete dissociation of larger oligopeptide ions and unusually abundant fragment ions. In comparison to CAD, much more internal energy can be deposited in the primary ions using 193-nm photons, sufficient to dissociate peptide ions of m/z > 2000. Mass spectra closely resembling ion photodissociation spectra can also be obtained by' neutral photodissociation (193-nm laser irradiation of the sample) followed by ion photodesorption.     

Peptide photodissociation at 157 nm in a linear ion trap mass spectrometer

The photodissociation by 157 nm light of singly- and doubly-charged peptide ions containing C- or N-terminal arginine residues was studied in a linear ion trap mass spectrometer. Singly-charged peptides yielded primarily x- and a-type ions, depending on the location of the arginine residue, along with some related side-chain fragments. These results are consistent with our previous work using a tandem time-of-flight (TOF) instrument with a vacuum matrix-assisted laser desorption/ionization (MALDI) source. Thus, the different internal energies of precursor ions in the two experiments seem to have little effect on their photofragmentation. For doubly-charged peptides, the dominant fragments observed in both photodissociation and collisionally induced dissociation (CID) experiments are b- and y-type ions. Preliminary experiments demonstrating fragmentation of multiply-charged ubiquitin ions by 157 nm photodissociation are also presented.     

Zwitterionic states in gas-phase polypeptide ions revealed by 157-nm ultra-violet photodissociation

A new method of detecting the presence of deprotonation and determining its position in gas-phase polypeptide cations is described. The method involves 157-nm ultra-violet photodissociation (UVPD) and is based on monitoring the losses of CO2 (44 Da) from electronically excited deprotonated carboxylic groups relative to competing COOH losses (45 Da) from neutral carboxylic groups. Loss of CO2 is a strong indication of the presence of a zwitterionic [(+)...(-)...(+)] salt bridge in the gas-phase polypeptide cation. This method provides a tool for studying, for example, the nature of binding within polypeptide clusters. Collision-activated dissociation (CAD) of decarboxylated cations localizes the position of deprotonation. Fragment abundances can be used for the semiquantitative assessment of the branching ratio of deprotonation among different acidic sites, however, the mechanism of the fragment formation should be taken into account. Cations of Trp-cage proteins exist preferentially as zwitterions, with the deprotonation position divided between the Asp9 residue and the C terminus in the ratio 3:2. The majority of dications of the same molecule are not zwitterions. Furthermore, 157-nm UVPD produces abundant radical cations M*+ from protonated molecules through the loss of a hydrogen atom. This method of producing M*+ ions is general and can be applied to any gas-phase peptide cation. The abundance of the molecular radical cations M*+ produced is sufficient for further tandem mass spectrometry (MS/MS), which, in the cases studied, yielded side-chain loss of a basic amino acid as the most abundant fragmentation channel together with some backbone cleavages.     

Dynamics of OH radical generation in laser-induced photodissociation of tetrahydropyran at 193 nm

Tetrahydropyran (THP) undergoes photodissociation on excitation with ArF laser at 193 nm, generating OH radical as one of the transient photoproducts. Laser-induced fluorescence technique is used to detect the nascent OH radical and measure its energy state distribution. The OH radical is formed mostly in the ground vibrational level (v"=0), with low rotational excitation. The rotational distribution of OH (v"=0,J) is characterized by a temperature of 433+/-31 K, corresponding to a rotational energy of 0.86+/-0.06 kcalmol. Two Lambda-doublet levels, 2Pi+(A') and 2Pi-(A"), and the two spin-orbit states, the 2Pi(3/2) and 2Pi(1/2), of OH are populated statistically for all rotational levels. The relative translational energy associated with the photoproducts in the OH channel is calculated to be 21.9+/-3.2 kcal mol(-1), from the Doppler-broadened linewidth, giving an ft value of approximately 43%, and most of the remaining 57% of the available energy is distributed in the internal modes of the other photofragment, C5H9. The observed distribution of the available energy is explained well, using a hybrid model of energy partitioning, with an exit barrier of 40 kcal mol(-1). The potential-energy surface of the reaction channel was mapped by ab initio molecular-orbital calculations. Based on experimental and theoretical results, a mechanism for OH formation is proposed. Electronically excited THP relaxes to the ground electronic state, and from there, a sequence of reactions takes place, generating OH. The proposed mechanism first involves C-O bond scission, followed by a 1,3 H atom migration to O atom, and finally, the C-OH bond cleavage giving OH.     

Detection of OH radical in laser induced photodissociation of tetrahydrofuran at 193 nm

On excitation at 193 nm, tetrahydrofuran (THF) generates OH as one of the photodissociation products. The nascent energy state distribution of the OH radical was measured employing laser induced fluorescence technique. It is observed that the OH radical is formed mostly in the ground vibrational level, with low rotational excitation (approximately 3%). The rotational distribution of OH (v"=0,J) is characterized by rotational temperature of 1250+/-140 K. Two spin-orbit states, 2Pi3/2 and 2Pi1/2 of OH are populated statistically. But, there is a preferential population in Lambda doublet levels. For all rotational numbers, the 2Pi+(A') levels are preferred to the 2Pi-(A") levels. The relative translational energy associated with the photoproducts in the OH channel is calculated to be 17.4+/-2.2 kcal mol-1, giving an fT value of approximately 36%, and the remaining 61% of the available energy is distributed in the internal modes of the other photofragment, i.e., C4H7. The observed distribution of the available energy agrees well with a hybrid model of energy partitioning, predicting an exit barrier of approximately 16 kcal mol-1. Based on both ab initio molecular orbital calculations and experimental results, a plausible mechanism for OH formation is proposed. The mechanism involves three steps, the C-O bond cleavage of the ring, H atom migration to the O atom, and the C-OH bond scission, in sequence, to generate OH from the ground electronic state of THF. Besides this high energy reaction channel, other photodissociation channels of THF have been identified by detecting the stable products, using Fourier transform infrared and gas chromatography.     

Fragmentation of oligosaccharide ions with 157 nm vacuum ultraviolet light

The 157 nm photofragmentation of native and derivatized oligosaccharides was studied in a linear ion trap and in a home-built matrix-assisted laser desorption/ionization (MALDI) tandem time-of-flight (TOF/TOF) mass spectrometer, and the results were compared with collision-induced dissociation (CID) experiments. Photodissociation produces product ions corresponding to high-energy fragmentation pathways; for cation-derivatized oligosaccharides, it yields strong cross-ring fragment ions and provides better sequence coverage than low- and high-energy CID experiments. On the other hand, for native oligosaccharides, CID yielded somewhat better sequence coverage than photodissociation. The ion trap enables CID hybrid MS3 experiments on the high-energy fragment ions obtained from photodissociation.     

Surface-induced dissociation of peptide ions in Fourier-transform mass spectrometry

Peptide molecular ion species up to m/z 3055 introduced into a Fourier-transform mass spectrometer can be made to undergo extensive fragmentation by electrically floating the ion cell. The proportion of ions dissociated increases with increasing voltage, with 48 eV producing the highest absolute abundance of fragment ions above m/z 200. At this energy, spectra closely resemble those from photodissociation at 193 nm, indicating an internal energy deposition of 6–7 eV; change of product abundances with kinetic energy resembles a conventional breakdown curve. The precursor ions apparently are electrostatically attracted to strike screen wires across the ion cell entrance, producing daughter ions of low kinetic energy.

     

Ultraviolet photodissociation at 266 nm of phosphorylated peptide cations

Ultraviolet (UV) photodissociation (PD) experiments using 266 nm light were performed for a series of phosphopeptide cations in a Fourier transform mass spectrometer. The objective of the experiments was to determine whether 266 nm UV irradiation on the phosphopeptide cations would induce unique peptide backbone dissociation. In addition, the general behavior of the phosphate loss (?80 or ?98 Da) was monitored, particularly for those phosphopeptides with a phosphotyrosine residue that itself is a UV chromophore. For phosphopeptides with a UV chromophore, their photodissociation behavior was very similar to that of low‐energy sustained off‐resonance irradiation collisionally activated dissociation (SORI‐CAD), with a few exceptions. For example, b‐ and y‐type peptide backbone fragments were prevalent, and their dephosphorylation behavior was consistent with that of the SORI‐CAD results. For phosphoserine peptides, the loss of a phosphate group was always observed. On the other hand, for phosphotyrosine peptides, the phosphate loss was found to be dependent on the presence of a basic amino group in the sequence and the charge state of the precursor ions, in agreement with the CAD results in the literature. However, hydrogen atom loss or aromatic side chain loss, which is known to be the excited state specific fragmentation pathway, was rarely observed in our 266 nm UV PD experiments, in contrast to the previous UV PD literature (particularly at 220 nm). The mechanism for these observations is described in terms of dominant internal conversion followed by intramolecular vibrational energy redistribution (IVR). Copyright © 2009 John Wiley & Sons, Ltd.     

A study of the unimolecular dissociation of the 2-buten-2-yl radical via the 193 nm photodissociation of 2-chloro-2-butene

This work investigates the unimolecular dissociation of the 2-buten-2-yl radical. This radical has three potentially competing reaction pathways: C-C fission to form CH3 + propyne, C-H fission to form H + 1,2-butadiene, and C-H fission to produce H + 2-butyne. The experiments were designed to probe the branching to the three unimolecular dissociation pathways of the radical and to test theoretical predictions of the relevant dissociation barriers. Our crossed laser-molecular beam studies show that 193 nm photolysis of 2-chloro-2-butene produces 2-buten-2-yl in the initial photolytic step. A minor C-Cl bond fission channel forms electronically excited 2-buten-2-yl radicals and the dominant C-Cl bond fission channel produces ground-state 2-buten-2-yl radicals with a range of internal energies that spans the barriers to dissociation of the radical. Detection of the stable 2-buten-2-yl radicals allows a determination of the translational, and therefore internal, energy that marks the onset of dissociation of the radical. The experimental determination of the lowest-energy dissociation barrier gave 31 +/- 2 kcal/mol, in agreement with the 32.8 +/- 2 kcal/mol barrier to C-C fission at the G3//B3LYP level of theory. Our experiments detected products of all three dissociation channels of unstable 2-buten-2-yl as well as a competing HCl elimination channel in the photolysis of 2-chloro-2-butene. The results allow us to benchmark electronic structure calculations on the unimolecular dissociation reactions of the 2-buten-2-yl radical as well as the CH3 + propyne and H + 1,2-butadiene bimolecular reactions. They also allow us to critique prior experimental work on the H + 1,2-butadiene reaction.     

Collison-induced dissociation and photodissociation of nitroaromatic molecular ions: A unique isomerization for p-nitrotoluene and p-ethylnitrobenzene ions

The photodissociation and low-energy collision-induced dissociation of p-nitrotoluene and p-ethylnitrobenzene molecular ions were studied using Fourier transform ion cyclotron resonance mass spectrometry. The dissociation of these ions is highly dependent on the time-scale of the experiment and the pressure of the nitroaromatic compound. Collisions of the ions with nitroaromatic neutral species increase the abundance of fragment ions due to NO elimination, while collisions with inert gases such as sulfur hexafluoride and argon have no effect. Evidence is presented for the occurrence of an ion–molecule reaction between p-alkylnitrobenzene ions and nitroaromatic neutral species that induces isomerization of the ion. This isomerization is proposed to involve a nitro-to-nitrite rearrangement. Although the mechanism of this process is unknown, isotopic labeling experiments have shown that it does not involve nitrogen atom transfer between the two reactants. The dissociations of o-nitrotoluene, m-nitrotoluene and nitrobenzene ions are also discussed. For these ions, no pressure- or time-scale-dependent behavior was observed, indicating that an isomerization did not occur.     

Laser-induced fluorescence emission from HCO produced by 308 nm excimer laser photodissociation of acetaldehyde

The LIF emission spectrum of the HCO Ā ²A″-X̄ ²A′ transition has been analyzed, and ν₁″ = 2432 ± 20 cm⁻¹ was determined. The HCO(X̄) radicals generated by a photolysis pulse from the 5 Torr CH₃CHO sample disappear by second-order kinetics involving radical—radical reactions.     

State and velocity distributions of Cl atoms produced in the photodissociation of ICI at 237 nm

Photofragment spectroscopy of ICI molecules photodissociated at 237 nm is studied by 2 + 1 resonance-enhanced multi-photon ionization and time of flight techniques. Doppler profiles of the chlorine atom fragments in two spin—orbit states show that chlorine atoms in the ground state, ²P_3/2, are produced from a perpendicular dissociative transition, and chlorine atoms in the excited state, ²P , arise from a parallel transition. The possible electronically excited states leading to dissociation in both the perpendicular and parallel cases are considered.     

Distributions of angular anisotropy and kinetic energy of products from the photodissociation of methanol at 157 nm

We investigated distributions of angular-anisotropy parameter beta and kinetic energy of fragments after photodissociation of methanol using time-of-flight (TOF) mass spectrometry. Fragments, in particular CH(3)O and CO, were successfully detected using tunable radiation from a synchrotron for photoionization. Following O-H bond fission, a CH(3)O fragment with internal energy greater than 104 kJ mol(-1) dissociates to CH(2)O+H. Elimination of two H(2) accompanies formation of CO. The beta value of hydroxyl hydrogen is -0.26 whereas that of methyl hydrogen is zero. H(2) has two distinct components in TOF spectra; these rapid and slow components have beta values -0.30 and -0.18, respectively. The CH(3)+OH dissociation exhibits a highly anisotropic angular distribution with beta= -0.75. The beta values of fragments from CD(3)OH photolysis are addressed. From measurements of angular-anisotropy parameters of various fragments, we surmise that the transition dipole moment mu is almost perpendicular to the C-O-H plane and that n-3p(x) (2 (1)A") is the major photoexcited state at 157 nm.     

Site and isotopic effects on the angular anisotropy of products in the photodissociation of ethene at 157 nm

We measured angular-anisotropy parameters beta(E(t)) of fragments from photolysis of ethene and four isotopic variants at 157 nm using photo-fragment translational spectroscopy and selective photoionization. The averaged beta value of products ranges from -0.17 to 0.10, depending on dissociation pathways. Angular distributions of atomic hydrogen produced from C(2)H(4) and C(2)D(4) are isotropic. For dissociation into C(2)H(2) + H(2), beta has a small negative value whereas dissociation into C(2)D(2) + D(2) has an isotropic angular distribution. The photolysis of dideuterated ethene reveals site and isotopic effects on the angular distributions of products; products H(2), HD, and D(2) from photolysis of 1,1-CH(2)CD(2) have negative, nearly zero, and positive values of beta, respectively. Molecular hydrogen from photolysis of 1,2-cis-CHDCHD has a negative beta value and the anisotropy has a trend D(2) > H(2) > HD. Photolysis of 1,2-trans-CHDCDH produced a result similar to photolysis of 1,2-cis-CHDCHD for the angular anisotropy of molecular hydrogen except slightly more isotropic. A calculation of optimized geometries of ethene in the ground electronic state and pertinent transition structures enables a qualitative interpretation of the site and isotopic effects on the angular anisotropy of products. We deduce that the photoexcited state of ethene at 157 nm has a major character (1)B(1u) that produces a transition dipolar moment parallel to the C=C bond.