Experimental and theoretical study of a new carbazole derivative having terminal benzimidazole rings

A novel intramolecular donor–acceptor compound has been synthesized and characterized. This compound was a symmetrical A–π–D–π–A type molecule containing two benzimidazole rings as two electron acceptors (A) and an N-ethylcarbazole group as electron donors (D). The absorption and emission spectra of the compound were determined by experimental methods in solution and were computed by using the density functional theory (DFT) and the time-dependent density functional theory (TDDFT) in gas phase and in chloroform solution. The calculated absorption and emission wavelengths were in good agreement with the experimental ones. The fluorescence quantum yields and fluorescence lifetimes of the compound in several solvents have been studied by means of steady state and time resolved fluorescence. The results showed the compound had high quantum yield. The cross-section of two-photon absorption (TPA) of the compound was measured by using femtosecond laser in dichloromethane solution. The result indicated the cross-section maximum of two-photon absorption was 430 GM at 600 nm. These results made the compound of great interest as a new fluorescent probe and photoluminescence material.     

Experimental and theoretical study of two new pyrazoline derivatives based on dibenzofuran

Two novel pyrazoline derivatives, named 2,8-bis(1,3-diphenyl-pyrazoline-5-yl)dibenzofuran (A) and 2,8-bis(1-(4-bromophenyl)-3-phenyl-pyrazoline-5-yl)dibenzofuran (B), were synthesized and characterized by elemental analysis, NMR, MS and thermogravimetric analysis. The absorption and emission spectra of them were determined by experimental methods in different polar solvents and were computed using the density functional theory (DFT) and the time-dependent density functional theory (TDDFT) at the same time. The calculated absorption and emission wavelengths are in good agreement with the experimental data. The fluorescence quantum yields and fluorescence lifetimes of them in different polar solvents were studied by means of steady state and time resolved fluorescence. The calculated reorganization energy for hole and electron indicates that the two compounds are in favor of hole transport than electron transport. The results show the two compounds present high fluorescence quantum yields and excellent thermal stability. It makes them of great interest as novel fluorescent probes and optoelectronic materials.     

Experimental and theoretical investigation of self-association in inert environment of new triflamide derivatives

According to the data of IR spectroscopy and quantum chemical calculations N-(2-phenylethyl) trifluoromethanesulfonamide exists in an inert solvent CCl₄ as an equilibrium mixture of the monomer and chain associates; in contrast, N-(5-iodocyclopentenyl)-1,1,1-trifluoromethanesulfonamide under the same conditions is prone to the formation of cyclic self-associates. The behavior of N,N′-(cyclohexenediyl)-bis(1,1,1-trifluoromethane sulfonamide) in the same medium is far more complicated: apart from the monomer with intramolecular hydrogen bonds (HB), it forms only cyclic self-associates with eight-membered and eleven-membered rings.     

Synthesis of new pyrido[3,4-c]carbazole derivatives

Previously unknown 2-[6-hydroxy-9-(4-methoxyphenyl)-1,2,3,9-tetrahydro-4H-carbazol-4-ylidene]malononitrile was synthesized by the Nenitzescu reaction and was used for the construction of new tetracyclic compounds, viz., pyrido[3,4-c]carbazoles. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1600–1604, September, 2006.     

Experimental and theoretical studies on three spiromuscar-3-one M1 agonist derivatives

Muscarone analogues are compounds that have been proposed for the prevention or treatment of senile dementias. ARL-16607 (I), ARL-15467 (II), ARL-14995 (III) and YM-796 (IV) are spiromuscar-3-one derivatives and behave as muscarinic M₁ agonists, with different binding selectivity and efficacy at the M₁ receptors. In this work, we have elucidated the solid-state structures of I-III and compared the results obtained with the data available in the literature for IV.The solid-state arrangements of I-IV have then been used to input a series of theoretical calculations. For each molecule, eight conformations have been modeled and the obtained structures (1-32) have been submitted to a series of molecular dynamics/simulated annealing and molecular mechanics calculations aimed to explore the conformational freedom of the spiromuscar-3-one moiety. Some hints about the reactivity of I-IV have been obtained by performing Hartree-Fock, density functional theory and semiempirical quantum mechanics calculations. These studies analyzed the properties of the frontier orbitals and of the molecular electrostatic potential of I-IV.The information gained has been used to explain the better efficacy and poorer selectivity shown by III. Our results suggest that the behavior of III is due to its smaller size, the features of its molecular surface, the shape of its electrostatic potential and the orientation of its reactive domains.     

Electronic structures of carbazole and its derivatives: A semi-empirical study on the substitution effects of carbazole

The electronic structures of carbazole, N-phenylcarbazole (NPC), cyanophenylcarbazole (CPC) and N-ethylcarbazole (NEC) have been calculated using the quantum chemical semi-empirical MINDO/3 method. In this paper, electronic ground states and first singlet excited states of the systems mentioned were investigated. It is observed that the excitation energy of carbazole based on the calculated difference in heats of formation agrees quite well with experimental data obtained from supersonic expansion studies. Calculated energy levels of molecular orbitals and their graphical forms are used qualitatively in elucidating the S₀ → S₁ excitation electronic origin red shifts observed in carbazole derivatives with respect to the electronic origin of the parent carbazole. It is noted that the red shifts are not just a result of the destabilization of the HOMO of carbazole but are also determined by the nature of the substituting moieties. It is also observed that the LUMO of CPC is not derived from the parent carbazole which partially explains the difference in electronic behaviour as compared with the other derivatives.     

Synthesis, photophysical and electrochemical properties and theoretical studies on three novel indolo[3,2-b]carbazole derivatives containing benzothiazole units

Three novel indolo[3,2-b]carbazoles derivatives were successfully synthesized by condensation reaction and structurally characterized by elemental analysis, mass spectrometry and proton nuclear magnetic resonance spectroscopy methods, which belong to donor-π-acceptor systems comprising an indolo[3,2-b]carbazole group as an electron donor and two benzothiazole rings as electron acceptors. The thermal, electrochemical and photophysical properties of the compounds were characterized by thermogravimetric analysis combined with electrochemistry, UV-vis absorption spectroscopy and fluorescence spectroscopy. On the other hand, the geometries, molecular orbitals, charge-injection and transport properties were determined by quantum chemical calculations. The results show that the compounds synthesized exhibit good thermal stability and high fluorescence quantum yields, indicating the potential application as optoelectronic materials.     

Synthesis, characterization, tautomerism and theoretical study of some new Schiff base derivatives

New Schiff base derivatives were prepared by the condensation of 5-chloro and 5-bromo salicylaldehyde with bis(o-aminophenol)ethers. Five bis(o-nitrophenol)ether compounds were synthesized using some ditosylate, 1,3-dibromopropane and 1,4-dibromobuthane with o-nitrophenol. These compounds were reduced to bis(o-aminophenol)ethers. The products have been characterized by elemental analysis, FTIR, 1H, 13C NMR, HETCOR and HMBC spectroscopic techniques. The tautomerisms of all of the Schiff bases compounds were determined in DMSO, CHCl3, C2H5OH and C6H12 solvents and in both acidic and basic media using the UV-vis spectrophotometric method. The heat of formation (ΔHf), enthalpy (ΔH), entropy (ΔS), Gibbs free energy (ΔGf and ΔG), stable isomers, conformations and tautomers of the synthesized compounds are calculated using the MOPAC2009 (PM6) program.     

Experimental and theoretical study of the exited state of aminostyryl terpyridine derivatives: hydrogen-bonding effects

Lanreotide, a somatostatin analogue peptide used for peptide receptor mediated therapy in metastatic neuroendocrine tumors, was used as capping agent of gold nanoparticles (GNPs) obtained by citrate reduction method. The displacement of the citrate groups from the GNPs surface by Lanreotide (LAN) molecules was evidenced by infrared and Raman spectra. The nanoparticles system, Au@LAN, was also characterized from HRTEM (High-Resolution Transmission Electron Microscopy) and Z-contrast images, UV–vis and EDS spectra. The stability on aging in water solution of the composite is discussed from the UV–vis spectra. The affinity constant of Au@LAN conjugate, calculated from Capillary Zone Electrophoresis data, was found to be 0.52. All the experimental evidence supports that the gold nanoparticles are effectively capped by the Lanreotide molecules through relatively strong covalent interactions. This result opens the possibility of combining the optical properties of gold nanoparticles and of Lanreotide molecule to form a bifunctional system for potential biomedical applications.     

Experimental and theoretical study of two-photon absorption in nitrofuran derivatives: Promising compounds for photochemotherapy

We report experimental and theoretical studies of the two-photon absorption spectrum of two nitrofuran derivatives: nitrofurantoine, (1-(5-nitro-2-furfurilideneamine)-hidantoine) and quinifuryl, 2-(5(')-nitro-2(')-furanyl)ethenyl-4-{N-[4(')-(N,N-diethylamino)-1(')-methylbutyl]carbamoyl} quinoline. Both molecules are representative of a family of 5-nitrofuran-ethenyl-quinoline drugs that have been demonstrated to display high toxicity to various species of transformed cells in the dark. We determine the two-photon absorption cross-section for both compounds, from 560 to 880 nm, which present peak values of 64 GM for quinifuryl and 20 GM for nitrofurantoine (1 GM = 1×10(-50)cm(4).s.photon(-1)). Besides, theoretical calculations employing the linear and quadratic response functions were carried out at the density functional theory level to aid the interpretations of the experimental results. The theoretical results yielded oscillator strengths, two-photon transition probabilities, and transition energies, which are in good agreement with the experimental data. A higher number of allowed electronic transitions was identified for quinifuryl in comparison to nitrofurantoine by the theoretical calculations. Due to the planar structure of both compounds, the differences in the two-photon absorption cross-section values are a consequence of their distinct conjugation lengths.     

Experimental and theoretical comparative studies on two 2-pyrazoline derivatives

Two 2-pyrazoline derivatives of 1-phenyl-3-(4-methylphenyl)-5-phenyl-2-pyrazoline (1) and 1-phenyl-3-(4-methylphenyl)-5-(2,4-dichlorophenyl)-2-pyrazoline (2) have been synthesized and characterized by elemental analysis, IR, UV–vis and fluorescence spectroscopy. The crystal structure of 2 has been determined by X-ray single crystal diffraction. For the two compounds, density functional theory (DFT) calculations of the structures and natural population atomic charge analysis have been performed at B3LYP/6-311G** level of theory. By using TD-DFT method, electron spectra of 1 and 2 have been predicted, which suggests the B3LYP/6-311G** method can approximately simulate the electron spectra for the system presented here. Comparative studies on 1 and 2 indicate that the change of substituent in 5-phenyl ring of pyrazoline ring influences the peak location and intensity in electronic and fluorescence spectra.     

Experimental and theoretical investigation of new furan and thiophene derivatives containing oxazole,isoxazole, or isothiazole subunits

Structural Chemistry - Herein, we present joint experimental and theoretical studies on newly designed thiophene- or furan-based oxazole, isoxazole, and isothiazole derivatives. Our synthetic...     

Experimental and theoretical investigation of epoxide quebrachitol derivatives through spectroscopic analysis

Two synthetic epoxide derivatives, important intermediates in organic synthesis, were obtained from L-quebrachitol, and their conformations were proposed based on spectroscopic analysis. Density functional theory (DFT) calculations of infrared and NMR spectra were shown to be reliable enough for organic chemistry applications. The observed structures were determined with the aid of the DFT spectroscopic data, stressing the relevance and utility of combined experimental/theoretical studies and also the usefulness of the (13)C NMR B3LYP/6-31G(d,p) calculations.     

Structural and theoretical study of four novel norcantharidine derivatives: two new cases of conditional isomorphism

Structural and theoretical studies of four novel 5,6‐dehydronorcantharidine ( DNCA )/norcantharidine ( NCA ) derivatives, namely (3aR,4S,7R,7aS)‐2‐phenyl‐3a,4,7,7a‐tetrahydro‐4,7‐epoxy‐1H‐isoindole‐1,3(2H)‐dione, C₁₄H₁₁NO₃ ( DNCA‐A ), (3aR,4S,7R,7aS)‐2‐(4‐nitrophenyl)‐3a,4,7,7a‐tetrahydro‐4,7‐epoxy‐1H‐isoindole‐1,3(2H)‐dione, C₁₄H₁₀N₂O₅ ( DNCA‐NA ), (3aR,4S,7R,7aS)‐2‐(4‐nitrophenyl)‐3a,4,5,6,7,7a‐hexahydro‐1H‐4,7‐epoxyisoindole‐1,3(2H)‐dione, C₁₄H₁₂N₂O₅ ( NCA‐NA ), and (3aR,4S,7R,7aS)‐2‐(2‐hydroxyethyl)‐3a,4,5,6,7,7a‐hexahydro‐1H‐4,7‐epoxyisoindole‐1,3(2H)‐dione, C₁₀H₁₃NO₄ ( NCA‐AE ), are reported. The supramolecular interactions and single‐crystal structural characteristics of these molecules, together with the crystal structures of four other similar molecules, i.e. NCA‐A (the 4‐phenyl derivative of NCA‐NA ), DNCA‐AE (the 5,6‐unsaturated derivative of NCA‐AE ), DNCA and NCA , were analysed. Surprisingly, DNCA‐A and NCA‐A , as well as DNCA–NA and NCA‐NA , proved to be isomorphic, while DNCA‐AE and NCA‐AE , as well as DNCA and NCA , have very different crystal structures. These are very rare isostructural examples between unsaturated and saturated oxanorbornene/oxanorbornane derivatives. To further explore how noncovalent interactions (NCIs) affect the degree of isomorphism in this particular series of rigid molecules where there is a fairly limited conformational degree of freedom, all four pairs of crystal structures were analyzed in parallel. The differentiation in NCIs which entails the packing mode of similar molecules is supported by energy calculations based on real or exchanged crystal structures. Our results show that minor structural differences may result in very different supramolecular interactions, and so lead to altered packing modes in the crystalline solids. Even if isostructurality sometimes occurs, the possibility of various molecular packing types cannot be ruled out. On the other hand, isomorphism may just be the result of kinetic possibilities instead of relative thermodynamic stabilities. Though crystal structure prediction is formidable, the comparison method based on existing crystal structures and quantum calculations can be used to predict the probability of isomorphism. This understanding will help us to design new norbornene derivatives with specified structures.     

Thermochemical study of three dimethylpyrazine derivatives

The standard (p ⁰=0.1 MPa) molar enthalpies of formation, in the gaseous phase, at T-298.15 K, for 2,5-dimethylpyrazine (2,5-DMePz) and for the two dimethylpyrazine-N,N′-dioxide derivatives, 2,3-dimethylpyrazine-1,4-dioxide (2,3-DMePzDO) and 2,5-dimethylpyrazine-1,4-dioxide (2,5-DMePzDO), were derived from the measurements of standard massic energies of combustion, using a static bomb calorimeter, and from the standard molar enthalpies of vaporization or sublimation, measured by Calvet microcalorimetry. The mean values for the molar dissociation enthalpy of the nitrogen-oxygen bonds, 〈DH _m⁰〉(N-O), were derived for both N,N′-dioxide compounds. These values are discussed in terms of the molecular structure of the two N,N′-dioxide derivatives and compared with 〈DH _m⁰〉(N-O) values previously obtained for other N-oxide derivatives.     

Researches on the chemistry of carbazole derivatives

A method of preparing a number of 9-(-alkoxyethyl)-carbazoles by adding carbazole to the corresponding simple vinyl ethers in the presence of acid catalysts is described. Data relating to the effects of various factors on the reaction are given. The synthetic method developed for 9-(-alkylhydroxyethyl) carbazoles differs from that previously used in that reaction conditions are milder, yields of vinyl ethers lower, and yields of products higher.     

Experimental and theoretical electron density study of estrone

The electron density and the electrostatic potential (ESP) distributions of estrone have been determined using X-ray diffraction analysis and compared with theoretical calculations in the solid and gas phases. X-ray diffraction measurements are performed with a Rigaku Rapid rotating anode diffractometer at 20 K. The electron density in the estrone crystal has been described with the multipole model, which allowed extensive topological analysis and calculation of the ESP. From DFT calculations in the solid state a theoretical X-ray diffraction data set has been produced and treated in the same way as the experimental data. Two sets of single molecule DFT calculations were performed: (a) An electron density distribution was obtained via a single-point calculation with a large basis set at the experimental geometry and subsequently analyzed according to the quantum theory of atoms in molecules (AIM) to obtain the bond and most atomic properties, and (b) another electron density distribution was obtained with a smaller basis set, but at a geometry optimized using the same basis set for the analysis of atomic energies. An interesting locally stabilizing hydrogen-hydrogen bond path linking H(1) and H(11B) is found which represents the first characterization of such bonding in a steroid molecule. AIM delocalization indices were shown to be well correlated to the experimental electron density at the bond critical points through an exponential relationship. The aromaticity of ring A, chemical bonding, the O(1)...O(2) distance necessary for estrogenic activity, and the electrostatic potential features are also discussed.     

Photochemical reaction of carbazole and some derivatives in dichloromethane

By irradiation of carbazole and some derivatives in CH₂Cl₂ soln two different reaction pathways were observed depending on the substitution of the heterocyclic compound.     

Experimental and theoretical study on the regioselective bis- and polyalkylation of 2-mercaptonicotinonitrile and 2-mercaptopyrimidine-5-carbonitrile derivatives

The synthetic utility of 2-mercaptonicotinonitriles 3 and 4, as well as 2-mercapto-4-oxo-6-phenyl-1,4-dihydropyrimidine-5-carbonitrile 20 as building blocks for novel bis- and poly(pyridines), along with poly(pyrimidines) via alkylation with the corresponding bis- and poy(halo) compounds was investigated. Spectroscopic and theoretical studies confirmed the S-alkylation rather than the N-alkylation.     

A theoretical study of the protonation of methylindole derivatives

Ab initio calculations on indole and all its mono-substituted methyl derivatives, using an STO-3G minimal basis set, show that the most basic site is C3. Protonation at the nitrogen atom cannot compete with protonation at C3; and C2 is the less basic site in all cases. The basicity increases with methyl substitution, with the only exception of 3-methyl indole. A good linear correlation exists between calculated and corresponding thermodynamics pK values. 2-Aminoindole is a much stronger base than methylindoles and its high pK value can be explained by the strong interactions with the solvent through tautomeric forms which accumulate positive charge at the NH₂ group. Intramolecular quenching of the fluorescence of some indole derivatives involves intramolecular proton transfer to C4 rather than C2. Reasons why ring nitrogens can behave as either π-acceptors or π-donors in this series are discussed.