Crystal structure and spectroscopy of a hydrogen-bridged one-dimensional Cu(II) complex containing both octahedral and square pyramidal geometries in the same unit cell

Single crystals of the helical hydrogen-bridged one-dimensional Cu(II) complex, [Cu(stpy)₂(CH₃COO)₂(H₂O)₂] (1) [Cu(stpy)₂(CH₃COO)₂(H₂O)] (2), are prepared and characterized by elemental and thermal analyses, IR, electronic and X-ray crystal structure determination. The crystals are monoclinic, of space group C2/c, with unit cell parameters a = 31.842(7) Å, b = 5.9829(10) Å, c = 30.970(14) Å, = 111.78(3)°, Z = 4. The asymmetric unit contains two different types of Cu(II) polyhedra, namely, octahedron and square pyramid within the same unit cell. 1 has elongated octahedral geometry with two nitrogen atoms from stpy and two oxygen atoms from synmonodentate acetate ligands, transcoordinated to Cu(II) in the basal plane. The oxygen atoms of the two water molecules occupy the axial positions. 2 has Cu(II) coordination polyhedra similar to 1, except that only one of the apical positions is occupied by a water molecule. The structure consists of two independent linear chains, one involving octahedral (1) and the other involving square-pyramidal (2) polyhedra, held by hydrogen bridges. The Cu–Cu intra- and interchain separations in both 1 and 2 are 5.983 and 8.214 Å. The unit cell packing shows weak -stacking between adjacent coordinated stpy ligands in the chain, resulting in ladder-type structure. Further, the extended packing reveals helical arrangement of Cu(II) polyhedra in the lattice.     

Transition metal(II) complexes of a biological buffer. Structural and spectroscopic study on Co(II), Ni(II), Cu(II), Zn(II), and Cd(II) complexes of N-[2-hydroxy-1,1-bis-(hydroxymethyl)ethyl]glycine

The structural and spectroscopic properties of complexes of N-[2-hydroxy-1,1-bis-(hydroxymethyl)ethyl]glycine (thmmg) with Co(II), Ni(II), Cu(II), Zn(II), and Cd(II) were investigated. The complex [Zn(thmmg)₂] crystallizes in the space groupP2₁/n, witha=8.796(2),b=9.050(3),c=9.926(2) Å,=97.35(1)° andZ=2; the copper(II) homolog is isomorphous. The complex [Ni(thmmg)₂]·6H₂O crystallizes in the space groupP2₁/n witha=8.432(8),b=8.495(2),c=15.967(1) Å,=95.57(2)° andZ=2; the cobalt(II) homolog is isomorphous. Ni(II) and Zn(II) complexes show an elongated octahedral coordination arising from two symmetry related amino acid molecules acting as a tridentate chelate through the amino nitrogen, one carboxylate oxygen, and one hydroxyl oxygen; the water molecules in the Ni(II) complex are not involved in metal coordination. The same ligand bonding mode may be suggested also for the Cu(II) and Co(II) complexes, while for Cd(II) only the nitrogen atom and the carboxylate oxygens seem to be involved in metal coordination.     

Copper(II) complexes 1-phenylpropane-1,2-dione- and benzil bis(3-piperidylthiosemicarbazone): A structural study

The crystal and molecular structure of copper(II) complexes of benzil bis(3-piperidylthiosemicarbazone), [Cu(Bnzpip)] and 1-phenylpropane-1,2-dione bis(3-piperidylthiosemicarbazone), [Cu(Pmpip)] have been determined. [Cu(Bnzpip)] is monoclinic, space group P2₁/n with a = 13.9375(10) Å, b = 11.6621(4) Å, c = 16.4710(10) Å, = 100.667(2)°, and V = 2630.9(3) ų with Z = 4, for d _calc = 1.399 g/cm³. [Cu(Pmpip)] is also monoclinic, space group P2₁/n with a = 11.292(6) Å, b = 10.219(5) Å, c = 20.292(6) Å, = 101.50(3)°, and V = 2295(2) ų with Z = 4, for d _calc = 1.525 g/cm³. Both complexes involve N₂S₂ coordination, are relatively planar except for the phenyl rings and have similar bond distances and angles to copper(II) complexes of other 3-piperidylthiosemicarbazones.     

Self-assembly in transition metal complexes: structural characterization of a copper histamine nitrate [Cu(II)(him)2(NO3)2]

A new monomeric copper (II) complex with histamine (him), [Cu(II)(him)₂(No₃)₂], has been prepared by the reaction of Cu(NO₃)₂ with histaminium dichloride and its structure was determined by x-ray crystallography. The complex crystallizes in the triclinic system, space group with a = 5.7238(4), b = 8.7094(7), c = 9.2481(11) Å, = 69.693(8), = 73.242(7), = 71.050(7)°, V = 400.84(6) ų, and Z = 1. The structure consists of discrete [Cu(II)(him)₂(NO₃)₂] molecules in which the metal atom is centrosymmetrically coordinated by two histamine ligands forming an equatorial plane with Cu–N(imidazole ring) being 2.032(2) and Cu–N(NH₂ group) being 2.023(2) Å. Two O atoms from nitrate anions coordinate on the elongated axial positions with Cu–O being 2.549(2) Å. In the crystal structure, the molecules are organized by hydrogen bonds forming a two-dimensional network.     

Crystal structure of dichlorobis(pyridine-1-oxide)copper(II)

The crystal and molecular structure of dichlorobis(pyridine-1-oxide) copper(II), C₁₀H₁₀N₂O₂Cl₂Cu, has been determined from 3931 reflections measured on a Picker four-circle diffractometer, using the /2 scan technique and MoK radiation. The crystals are monoclinic, space groupP2₁/c,a = 6.900(4),b = 15.065(7),c = 12.065(5) Å, = 97.00(4) ° andZ = 4. The structure was solved by Fourier methods and refined by full-matrix least-squares. The final conventionalR-factor was 0.033. The compound is dimeric, and the units of the dimer are held together by oxygen bridges. The coordination polyhedron for Cu is a tetragonal pyramid, with two bridging oxygens and two chlorines in the basal plane. The apical position is occupied by oxygen in the non-bridging ligand. The Cu–Cu distance in the dimer is 3.306(1) Å.     

X-ray crystal structure of a macrocyclic tetraamine nitrito nickel(II) complex

The compound [Ni(L)(²-NO₂)]ClO₄ (L = 5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane) has been synthesized and structurally characterized. It crystallizes in the monoclinic system, space group P2₁/c with a = 26.899(5), b = 8.476(2), c = 23.633(5) Å, = 115.12(13)°, V = 4878.6(17) ų, and Z = 4. Each nickel(II) ion has a six-coordinated bicapped square-pyramidal geometry with four secondary amines of the macrocycle and two oxygen atoms of the bidentate nitrito group. Electronic spectra and effective magnetic moment of the complex also exhibit a high-spin six-coordinated geometry.     

Crystal structure and EPR spectra of glycilglycilglycinocopper(II)bromide sesquihydrate

The title compound, Cu(glyglygly)Br·1·5H₂O, crystallizes in the space group C2/c, with a = 21.468(7), b = 6.716(5), c = 16.166(6) Å, = 98.39°, and Z = 8. The tripeptide is bonded to one Cu(II) ion through the nitrogen [Cu–N=1.97(1)Å] and oxygen [Cu–O=2.019(8)Å] atoms of the amino end glycine residue and to another Cu(II) through one oxygen atom [Cu–O=1.931(9)Å] of the terminal carboxyl group. This give rise to covalently bonded and infinite ···–Cu–tripeptide–Cu–··· chains. These chains are linked to one another by a network of H-bonds involving the water molecules and bromide ions. The Cu(II) ion is in a distorted tetragonal pyramidal coordination polyhedron. At the corner of the base of the pyramid are the terminal glycine nitrogen and oxygen atoms of one tripeptide, a carboxylic oxygen of another tripeptide and a bromide ion. The fivefold coordination is completed with a water molecule at the top of the pyramid [Cu–Ow=2.286(9)Å]. For all orientations of the applied magnetic field the single crystal EPR spectra display a single anisotropic exchange collapsed resonance without hyperfine structure. Its position was measured in three perpendicular planes and the crystal g-tensor evaluated from the data. This tensor is interpreted in terms of the contributing Cu(II) complexes in the unit cell to deduce the principal values g₁ = 2.273, g₂ = 2.050 and g₃ = 2.131 for the molecular gyromagnetic tensor. We also discuss the magnitude of the exchange interaction between neighboring copper ions in the lattice on the basis of the features in the EPR spectra and the structural information.     

Crystal structure determination of (triethyleneglycol)bis(3,5-dinitrobenzoate) strontium(II) monohydrate

The complex {[Sr(C₇H₃N₂O₆)₂(C₆H₁₄O₄)]·H₂O}₂ is a centrosymmetric dimer. Each Sr^{2 +} in the cluster is nine coordinated by four oxygens of triethyleneglycol and the carboxylate oxygens of 3,5-dinitrobenzoate (DNB) anions. One of the DNBs behaves as a symmetrical bidentate chelating ligand whereas the other acts as a highly unsymmetrical, tridentate, chelating-cum-bridging ligand. The crystal is triclinic with a space group P1. The unit cell dimensions are a = 14.955(2), b = 12.730(2), c = 7.389(2) Å, = 73.06(1)°, = 99.56(1)°, = 80.02(2)° , V = 1289.84 ų, = 0.71070 Å, Z = 2. The centrosymmetrically related Sr^{2 +} is separated by a short distance of 4.565(1) Å, which results in a closely packed cluster of monomers. Both the alcoholic oxygens are H-bond donors toward the carboxylate oxygens of one of the DNB anion. The water molecule occupies intermolecular spaces.     

Synthesis and crystal structure of a cobalt(II) complex with tris(1-pyrazolylmethyl)amine

The synthesis of a cobalt(II) complex of tris(1-pyrazolylmethyl)amine (amtp) is reported. The complex [Co(amtp)Cl](BPh₄) crystallizes in the space group P-1, with a = 8.979(2), b = 19.329(3), c = 20.251(3) Å, = 93.321(2), = 93.685(3), = 98.930(2)°, and Z = 4. The Co(II) atom is nearly tetrahedrally coordinated by three pyrazole N-atoms and one Cl^–. The tertiary amine N-atom of amtp is only weakly coordinated to Co(II) atom at a Co—N(amine) distance of ca 2.40 Å.     

Structure and characterization of hexakis(imidazole) cobalt(II) complexes: [Co(Im)6(OBz)2] and [Co(Im)6(mB)2] (Im = imidazole, OBz = benzoate, mB = p-methoxybenzoate)

The crystal and molecular structures of the complexes of [Co(Im)₆(OBz)₂] and [Co(Im)₆(mB)₂] (Im = imidazole, OBz = benzoate, mB = p-methoxybenzoate) have been determined by X-ray crystallography. The crystal structures are very similar and consist of discrete molecules of [Co(Im)₆(OBz)₂] and [Co(Im)₆(mB)₂], respectively. They both crystallize in the triclinic system, space group the former with lattice parameters a = 7.6934(3), b = 10.4518(5), c = 11.6088(5) Å, = 73.920(1), = 79.023(1), = 73.681(1)°, and Z = 1; the latter with a = 9.8336(3), b = 10.5509(2), c = 10.8889(3) Å, = 61.450(1), = 76.832(1), = 71.157(1)°, and Z = 1. The cobalt(II) ions have octahedral geometry with a CoN₆ chromophore. In the solid state, the complexes all form a three-dimensional network through N—H···O hydrogen bonds. The electronic spectra and IR spectra data are in agreement with the structural data.     

Crystal and molecular structure of bis(aminomethylphosphonate)copper(II)

The crystal and molecular structure of bis(aminomethylphosphonate)-copper(II), C₂H₁₀N₂O₆P₂Cu, has been determined from MoK diffractometer data. The compound crystallizes in the monoclinic space groupP2₁/n witha =7.571(2),b = 4.943(1),c = 11.212(3) Å, = 105.84(2) °, andZ = 2. The structure was solved by the heavy-atom technique and refined by full-matrix least-squares methods toR = 0.041, using 1084 reflections for which ¦F _o¦ > 3.92 (¦F _o¦). In this complex, the Cu atom is square-planar coordinated by four O atoms from four phosphonic groups, and not by the amino group. The Cu-O bond lengths are 1.928(3) and 1.937(3) Å, and the phosphonic groups bridge adjacent Cu atoms in polymeric chains. The infrared spectrum of this complex is reported.     

Crystal structure of mixed-ligand copper(II) complexes. Bis(2,2′-bipyridyl)monophenylphos-phatocopper(II)monophenylphosphate monohydrate, [Cu(C10H8N2)2(C6H5OPO3)]-(C6H5OPO3H2)(H2O)

The title mixed-ligand copper(II) complex has been synthesized and its crystal structure at room temperature solved. The crystals are monoclinic:P2₁/c,a=12.004(3),b=19.402(5),c=14.192(4) Å,=108.80(3)°,Z=4. The structure was solved by direct methods, and refined to anR value of 0.041 for 4457 nonzero independent reflections. The crystal structure consists of discrete [Cu(bipy) (MPhP)] units, noncoordinated MPhPH₂, and H₂O molecules. Each [Cu(bipy)₂(MPhP)] unit involves a five coordinate CuN₄O chromophore with a distorted trigonal-bipyramidal stereochemistry. The phosphate groups are linked together by short hydrogen bonds of (P)-O-H--O-P type.     

Synthesis and crystal structure of a macrocyclic azidotetraamine copper(II) complex

The complex [Cu(L)N₃](H₂O)(ClO₄) (1) (L = 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,0^1.18, 0^7.12]docosane) has been prepared and characterized by X-ray crystallography. 1 crystallizes in the monoclinic space group P2₁/c, with a = 8.907(5), b = 20.036(3), c = 14.773(2) Å, = 103.78(2)°, V = 2560.6(15) ų, and Z = 4. The coordination geometry around the Cu(II) ion is a distorted square-pyramidal with four nitrogen atoms of the macrocycle and one nitrogen atom of the axial azido group.     

Synthesis,Crystal Structure and Spectroscopy of <Emphasis Type="Italic">catena-</Emphasis>poly-bis(azido-<Emphasis Type="Italic">N1,N1</Emphasis>)(2-Aminopyrimidine)Copper(II)

Abstract The compound [Cu(ampym)(μ_1,1-N₃)₂]_n (ampym = 2-aminopyrimidine) has been synthesized and characterized by X-ray crystallography and infrared spectroscopy. In addition, Ligand Field and powder EPR measurements have been performed. The structure is solved in space group P21/c with a = 7.303(2), b = 19.716(4), c = 5.949(1) ?, β = 98.17(3), V = 847.9(3) ?³, Z = 2 with final R = 0.0382. The coordination geometry around the Cu(II) ion is distorted square pyramidal, with four nitrogen atoms of four bridging azido anions in the basal plane with Cu–N distances that range from 1.998(3) to 2.069(3) ?. The apical position is occupied by a nitrogen atom of the ampym molecule at a Cu–N distance of 2.169(3) ?. The trans-basal angles are 165.7(1) and 143.9(1)°. Weak hydrogen bonding is observed between the two amine hydrogen atoms and nitrogen of an azide anion and the pyrimidine-ring nitrogen atom of a neighbouring molecule (N···N distances 3.174(5), 3.106(4) ?). These last hydrogen bonds (N7···N3) are forming so-called “Watson-Crick type” hydrogen bonds. In the infrared the vibrations of the coordinated azide anion are observed at 2,062, 1,273 and 655 cm⁻¹, while the Cu–N vibrations are observed at 370 and 224 cm⁻¹. Ligand-field and EPR spectra are uneventful and give spectral parameters expected in the range for such Cu(II) compounds. Magnetic susceptibility measurements reveal a weak antiferromagnetic interaction between the Cu(II) ions. Index Abstract A new Cu(II) compound, [Cu(2-aminopyrimidine)(μ_1,1-N₃)₂]_n has been synthesized and characterized by X-ray crystallography and by IR, Ligand Field, EPR spectroscopy and magnetic susceptibility. The coordination geometry around the Cu(II) ion is distorted square pyramidal, with four nitrogen atoms of four bridging azido ligands in the basal plane with Cu–N distances that range from 1.998(3) to 2.069(3) ?. The apical position is occupied by a nitrogen atom of the ampym molecule at a Cu–N distance of 2.169(3) ?. Also a very interesting hydrogen bond system occurs between pairs of ligands in the lattice. .     

Crystal and molecular structure of bis(imazapyr)diaqua copper(II)

The imidazolinone herbicide imazapyr, 2-(4-isopropyl-4-methyl-5-oxo-2-imidazolin-2-yl)nicotinic acid (H₂imz) interacts with Cu(II) leading to [Cu(Himz)₂(H₂O)₂] which crystallizes in the space group Pbca, with a = 12.5370(3) Å, b = 19.8500(5) Å, c = 22.7720(9) Å, and Z = 8. The Cu(II) atom is octahedrally surrounded by four nitrogen atoms of two Himz^– anions and two water molecules. Each Himz^– acts as a chelating ligand by means of N pyridine and N lactam atoms leading to five-membered chelate rings. The Cu N distances vary from 1.948(4) to 2.299(5) Å while the Cu O are 2.114(5) and 2.256(6) Å. The imidazol N-H are involved in short intramolecular hydrogen bonds with the carboxylate groups. The structure is stabilized by an intermolecular hydrogen-bonded network involving the water molecules and the carboxylate groups.     

Self-assembly of copper(II) tetraaza macrocyclic complex with cyclohexane-1,3-dicarboxylic acid-5-monocarboxylate linked by hydrogen bond

A novel complex with the composition {[Cu(L)](Cl)(H,H-cdc)(H₂O)} _n (1) (L = 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,0^1.18,0^7.12]docosane; H,H-cdc = cyclohexane-1,3-dicarboxylic acid-5-monocarboxylate) has been synthesized and structurally characterized by X-ray diffraction method. It crystallizes in the monoclinic system P2₁/n with a = 9.507(9), b = 12.624(3), c = 26.922(4) Å, = 96.79(1)°, V = 3208(3) ų, Z = 4. The complex contains a 1D hydrogen-bonded polymeric chain with copper(II) macrocycle and bridging H,H-cdc ligand. The copper(II) coordination geometry is best described as a square-plane with four Cu–N bonds. The weak interaction between copper(II) ion and the chloride ion is also found.     

A reinvestigation of the crystal structure of (4-aminobenzophenone)dichlorocuprate(II) hemiethanolate

The crystal structure of CuCl₂L·1/2 C₂H₅OH has been redetermined, where L=4-aminobenzophenone. C₁₄H₁₄Cl₂CuNO_1.5,M _r=354.5, monoclinic, P2₁/c,a=8.206(1),b=6.196(2),c=29.917 (7) Å, =92.91°,V=1521.8(6) ų,Z=4,D _x=1.55 g cm^–3, (MoK)=0.71069Å, =17.9 cm^–1,F(000)=720,T=295K. The 1984 unique reflections (20<45°), of which 1635 had |F_o|3 (F_o), refined to a finalR of 0.042 andwR=0.049 for the 3 data set. The structure is disordered at room temperature with the ethanol molecules, present at half-occupancy, coordinating to only one half of the Cu(II) ions. The structure is comprised of two types of chains which run parallel tob. One type of chain consists of stacks of CuCl₂L(C₂H₅OH) monomer units, which yield a 4+2 coordination geometry for each Cu atom in the chains. The second type of chains has stacks of binuclear Cu₂Cl₄N₂ species with a 4+1 coordination exhibited by each Cu. The location and orientation of the L ligands appear to be identical in the two stacks. Intermolecular hydrogen bonding between L ligands in adjacent stacks leave space for only one ethanol molecule per two ligands.     

Metal complexes of chiral pyridine ligands. X-ray structure of nitratobis {2-(2S)-2-pyrrolidinyl]pyridine} copper (II) nitrate

Cobalt(II), nickel(II), and copper(II) complexes of 2-[(2S)-2-pyrrolidinyllpyridine (L) have been synthesized and characterized. The crystal structure of the complex [Cu(L)₂(NO₃)]NO₃ has been determined by X-ray diffraction. Crystals are monoclinic, space groupP2+, witha=10.766(3).b=7.525(2),c=13.447(4) Å. =104.64(2)°. and Z=2. The structure consists of [Cu(L)₂(NO₃)]⁺ cations and NO ₃ ^t- anions. The copper atom has a distorted trigonal bipyramidal coordination geometry with the two pyrrolidine nitrogens and one nitrate oxygen occupying the equatorial positions and the two pyridine nitrogens at the apices. The crystalline cohesion is ensured by a network of hydrogen bonds involving the pyrrolidine groups as donors and both coordinate and uncoordinate nitrates as acceptors.     

Hexa(1-vinylimidazole)Co(II) perchlorate

A new cobalt(II) complex of 1-vinylimidazole (vinim) has been synthesized as the perchlorate salt and structurally characterized. The molecular structure of the complex exhibits six coordination in which the geomety is a distorted octahedron. The vinylimidazole ring is coordinated through the imidazole nitrogen, as expected from earlier spectroscopic studies of related adducts. The space group is P2₁/n, with a = 8.512(2), b = 13.857(2), c = 16.146(2) Å, = 96.30(1)°, V = 989.31 ų, and Z = 2.     

Crystal structure and spectroscopy of bis-[bis(2-benzimidazolyl)propane]copper(II) bis(triflate)monohydrate, a copper complex with a geometry intermediate between tetrahedral and square planar

The structure of a mononuclear copper(II) compound with the ligand bis(2-benzimidazolyl)propane (abbreviated as tbz) is reported. The compound [Cu(tbz)₂](CF₃SO₃)₂(H₂O) crystallizes in the triclinic space group P , with a = 12.363(6), b = 13.218(9), c = 15.365(8) Å, = 82.74(5), = 68.04(4), = 65.30(5), and Z = 2. The Cu(II) atom has a geometry intermediate between tetrahedral and square planar, consisting of four nitrogen atoms of two tbz ligands. The Cu—N—Cu angles are about 135°, while the dihedral angle between them amounts to 62° (0° for square planar and 90° for a tetrahedron). Ligand field bands are observed at 10.2 × 10³, 13.8 × 10³, and 20.3 × 10³ cm^–1, while the most characteristic infrared vibrations of the triflate anion are observed at 1273, 1260, 1238, 1221, 1171, and 1157 cm^–1.