Molecular Double‐Bond Covalent Radii for Elements Li–E112

The previous systems of triple‐bond and single‐bond self‐consistent, additive covalent radii, R(AB)=r(A)+ r(B), are completed with a fit for σ²π² double‐bonds.The primary bond lengths, R, are taken from experimental or theoretical data corresponding to chosen group valencies. All r(E) values are obtained from the same, self‐consistent fit. Many of the calculated primary data came from E?CH₂ and H? E?CH₂ models. Homonuclear LE?EL, formaldehyde‐type Group 14–Group 16 and open‐shell, X ³ Σ Group‐16 dimer data are included. The standard deviation for the 316 included data points is 3 pm.     

Theoretical Study on the Mechanism of Ni‐Catalyzed Alkyl–Alkyl Suzuki Cross‐Coupling

Ni‐catalyzed cross‐coupling of unactivated secondary alkyl halides with alkylboranes provides an efficient way to construct alkyl–alkyl bonds. The mechanism of this reaction with the Ni/ L1 ( L1 =trans‐N,N′‐dimethyl‐1,2‐cyclohexanediamine) system was examined for the first time by using theoretical calculations. The feasible mechanism was found to involve a Ni^I–Ni^III catalytic cycle with three main steps: transmetalation of [Ni^I( L1 )X] (X=Cl, Br) with 9‐borabicyclo[3.3.1]nonane (9‐BBN)R₁ to produce [Ni^I( L1 )(R₁)], oxidative addition of R₂X with [Ni^I( L1 )(R₁)] to produce [Ni^III( L1 )(R₁)(R₂)X] through a radical pathway, and C? C reductive elimination to generate the product and [Ni^I( L1 )X]. The transmetalation step is rate‐determining for both primary and secondary alkyl bromides. KOiBu decreases the activation barrier of the transmetalation step by forming a potassium alkyl boronate salt with alkyl borane. Tertiary alkyl halides are not reactive because the activation barrier of reductive elimination is too high (+34.7 kcal mol^?1). On the other hand, the cross‐coupling of alkyl chlorides can be catalyzed by Ni/ L2 ( L2 =trans‐N,N′‐dimethyl‐1,2‐diphenylethane‐1,2‐diamine) because the activation barrier of transmetalation with L2 is lower than that with L1 . Importantly, the Ni⁰–Ni^II catalytic cycle is not favored in the present systems because reductive elimination from both singlet and triplet [Ni^II( L1 )(R₁)(R₂)] is very difficult.     

Breaking the Mirror: pH‐Controlled Chirality Generation from a meso Ligand to a Racemic Ligand

To study the conversion from a meso form to a racemic form of tetrahydrofurantetracarboxylic acid (H₄L), seven novel coordination polymers were synthesized by the hydrothermal reaction of Zn(NO₃)₂ ? 6 H₂O with (2S,3S,4R,5R)‐H₄L in the presence of 1,10‐phenanthroline (phen), 2,2′‐bipyridine (2,2′‐bpy), or 4,4′‐bipyridine (4,4′‐bpy): [Zn₂{(2S,3S,4R,5R)‐L}(phen)₂(H₂O)] ? 2 H₂O ( 1 ), [Zn₄{(2S,3R,4R,5R)‐L}{(2S,3S,4S,5R)‐L}(phen)₂(H₂O)₂] ( 2 ), [Zn₂{(2S,3S,4R,5R)‐L}(H₂O)₂] ? H₂O ( 3 ), [Zn₄{(2S,3R,4R,5R)‐L}{(2S,3S,4S,5R)‐L} (2,2′‐bpy)₂(H₂O)₂] ? 2 H₂O ( 4 ), [Zn₂ {(2S,3S,4R,5R)‐L}(2,2′‐bpy)(H₂O)] ( 5 ), [Zn₄{(2S,3R,4R,5R)‐L}{(2S,3S,4S,5R)‐L} (4,4′‐bpy)₂(H₂O)₂] ( 6 ), and [Zn₂ {(2S,3S,4R,5R)‐L}(4,4′‐bpy)(H₂O)] ? 2 H₂O ( 7 ). These complexes were obtained by control of the pH values of reaction mixtures, with an initial of pH 2.0 for 1 , 2.5 for 2 , 4 , and 6 , and 4.5 for 3 , 5 , and 7 , respectively. The expected configuration conversion has been successfully realized during the formation of 2 , 4 , and 6 , and the enantiomers of L, (2S,3R,4R,5R)‐L and (2S,3S,4S,5R)‐L, are trapped in them, whereas L ligands in the other four complexes retain the original meso form, which indicates that such a conversion is possibly pH controlled. Acid‐catalyzed enol–keto tautomerism has been introduced to explain the mechanism of this conversion. Complex 1 features a simple 1D metal–L chain that is extended into a 3D supramolecular structure by π–π packing interactions between phen ligands and hydrogen bonds. Complex 2 has 2D racemic layers that consist of centrosymmetric bimetallic units, and a final 3D supramolecular framework is formed by the interlinking of these layers through π–π packing interactions of phen. Complex 3 is a 3D metal–organic framework (MOF) involving meso‐L ligands, which can be regarded as (4,6)‐connected nets with vertex symbol (4⁵.6)(4⁷.6⁸). Complexes 4 and 5 contain 2D racemic layers and (6,3)‐honeycomb layers, respectively, both of which are combined into 3D supramolecular structures through π–π packing interactions of 2,2′‐bpy. The structure of complex 6 is a 2D network formed by 4,4′‐bpy bridging 1D tubes, which consist of metal atoms and enantiomers of L. These layers are connected through hydrogen bonds to give the final 3D porous supramolecular framework of 6 . Complex 7 is a 3D MOF with novel (3,4,5)‐connected (6³)(4².6⁴)(4².6⁶.8²) topology. The thermal stability of these compounds was also investigated.     

Mediated Electrocatalysis at the Electrodes Covered with [MIII(bpy)3](ClO4)3 (M=Co and Fe) in the Presence of Electroactive Solutes

Electron transfer processes for selected redox systems (ferrocene^0/+, decamethylferrocene^0/+, N,N,N′,N′‐tetramethyl‐1,4‐phenylenediamine^0/+, 7,7,8,8‐tetracyano‐quinonedimethane^0/?/2?, cobaltocene^0/+, C₆₀^0/?, and benzoquinone^0/?) at electrodes modified by precipitation of electrochemically inactive [M^III(bpy)₃](ClO₄)₃ (M=Co and Fe, bpy=2,2′‐bipyridine) layers have been investigated by cyclic voltammetry and electrochemical quartz crystal microbalance studies. The mediation of heterogeneous electron transfer is observed for these systems. For an electrode modified with [M^III(bpy)₃](ClO₄)₃, the rate of the electrocatalytic mediation process depends on the formal potential of the redox system. If the formal potential of the redox system is close to the potential of [Co^II(bpy)₃]²⁺ oxidation (as is the case with the decamethylferrocene^0/+, N,N,N′,N′‐tetramethyl‐1,4‐phenylenediamine^0/+ and 7,7,8,8‐tetracyanoquinonedimethane^0/? systems), the rate of the electrode reaction is limited by the rate of the chemical reduction of the [Co^III(bpy)₃](ClO₄)₃ solid phase by the reduced form of redox couple. For C₆₀ and benzoquinone, which have more negative formal potentials for reduction, the rate of diffusion of the electroactive reactant to the electrode surface limits the rate of electrode process. The kinetics of mediated electrocatalysis are also affected by the solvent. In the case of the Fe(III)‐based layer, the diffusion of the electroactive reactant in the solution is the rate determining step for the catalytic process at the modified electrode for all studied systems. Electrodes modified with [Fe^III(bpy)₃](ClO₄)₃ have been used for the quantitative determination of electroactive compounds. For ferrocene and decamethylferrocene, a linear relationship between the catalytic reduction current and the concentration of reactant in the solution has been observed over the concentration range from 1 to 50 mM.     

Kinetics of the substitution reactions of some Pt(II) complexes with 5′‐GMP and L‐histidine

The reactions of platinum(II) complexes, [PtCl₂(dach)] (dach = (1R,2R)‐1,2‐diaminocyclohexane) and [PtCl₂(en)] (en = ethylenediamine) with biologically relevant ligands such as 5′‐GMP (guanosine‐5′‐monophosphate) and l ‐His (l ‐histidine) were studied by UV–vis spectrophotometry, ¹H NMR spectroscopy, and high‐performance liquid chromatography (HPLC). Spectrophotometrically, these reactions were investigated under pseudo‐first‐order conditions at 310 K in 25 mM Hepes buffer (pH 7.2) and 10 mM NaCl to prevent the hydrolysis of the complexes. The [PtCl₂(en)] complex reacts faster than [PtCl₂(dach)] in the reaction with studied nucleophiles. This confirms the fact that the reactivity of studied Pt(II) complexes depends on the structure of the inert bidentate ligand. Also, the substitution reactions with l ‐His are always faster than the reactions with nucleotide 5′‐GMP. The reactions of [PtCl₂(dach)] and [PtCl₂(en)] complexes with l ‐histidine are studied by ¹H NMR spectroscopy. The obtained rate constants are in agreement with those obtained by UV–vis. The same reactions were studied by HPLC comparing the obtained chromatograms during the reaction. The changes in intensity of signals of the free and coordinated ligand show that after a few days there is only one dominant product in the system. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 43: 99–106, 2011     

Syntheses and crystal structures of two magnesium–tetrazole compounds in salt and polymeric forms

Two alkaline earth–tetrazole compounds, namely catena‐poly[[[triaquamagnesium(II)]‐μ‐5,5′‐(azanediyl)ditetrazolato‐κ³N¹,N^1′:N⁵] hemi{bis[μ‐5,5′‐(azanediyl)ditetrazolato‐κ³N¹,N^1′:N²]bis[triaquamagnesium(II)]} monohydrate], {[Mg(C₂HN₉)(H₂O)₃][Mg₂(C₂HN₉)₂(H₂O)₆]_0.5·H₂O}_n, (I), and bis[5‐(pyrazin‐2‐yl)tetrazolate] hexaaquamagnesium(II), (C₅H₃N₆)[Mg(H₂O)₆], (II), have been prepared under hydrothermal conditions. Compound (I) is a mixed dimer–polymer based on magnesium ion centres and can be regarded as the first example of a magnesium–tetrazolate polymer in the crystalline form. The structure shows a complex three‐dimensional hydrogen‐bonded network that involves magnesium–tetrazolate dimers, solvent water molecules and one‐dimensional magnesium–tetrazolate polymeric chains. The intrinsic cohesion in the polymer chains is ensured by N—H...N hydrogen bonds, which form R₂²(7) rings, thus reinforcing the propagation of the polymer chain along the a axis. The crystal structure of magnesium tetrazole salt (II) reveals a mixed ribbon of hydrogen‐bonded rings, of types R₂²(7), R₂²(9) and R₂⁴(10), running along the c axis, which are linked by R₂⁴(16) rings, generating a 4,8‐c flu net.     

Syntheses and Structures of Two Selenite Chloride Hydrates: Co(HSeO3)Cl · 3 H2O and Cu(HSeO3)Cl · 2 H2O

The first selenite chloride hydrates, Co(HSeO₃)Cl · 3 H₂O and Cu(HSeO₃)Cl · 2 H₂O, have been prepared from solution and characterised by single‐crystal X‐ray diffraction. The cobalt phase adopts an unusual “one‐dimensional” structure built up from vertex‐sharing pyramidal [HSeO₃]^2–, and octahedral [CoO₂(H₂O)₄]^2– and [CoO₂(H₂O)₂Cl₂]^4– units. Inter‐chain bonding is by way of hydrogen bonds or van der Waals' interactions. The atomic arrangement of the copper phase involves [HSeO₃]^2– pyramids and Jahn‐Teller distorted [CuCl₂(H₂O)₄] and [CuO₄Cl₂]^8– octahedra, sharing vertices by way of Cu–O–Se and Cu–Cl–Cu bonds. Crystal data: Co(HSeO₃)Cl · 3 H₂O, M_r = 276.40, triclinic, space group P 1 (No. 2), a = 7.1657(5) Å, b = 7.3714(5) Å, c = 7.7064(5) Å, α = 64.934(1)°, β = 68.894(1)°, γ = 71.795(1)°, V = 337.78(7) ų, Z = 2, R(F) = 0.036, wR(F) = 0.049. Cu(HSeO₃)Cl · 2 H₂O, M_r = 263.00, orthorhombic, space group Pnma (No. 62), a = 9.1488(3) Å, b = 17.8351(7) Å, c = 7.2293(3) Å, V = 1179.6(2) ų, Z = 8, R(F) = 0.021, wR(F) = 0.024.     

Cinerin C: a macrophyllin‐type bicyclo[3.2.1]octane neolignan from Pleurothyrium cinereum (Lauraceae)

The structure of naturally‐occurring cinerin C [systematic name: (7S,8R,3′R,4′S,5′R)‐Δ^8′‐4′‐hydroxy‐5,5′,3′‐trimethoxy‐3,4‐methylenedioxy‐2′,3′,4′,5′‐tetrahydro‐2′‐oxo‐7.3′,8.5′‐neolignan], isolated from the ethanol extract of leaves of Pleurothyrium cinereum (Lauraceae), has previously been established by NMR and HRMS spectroscopy, and its absolute configuration established by circular dichroism measurements. For the first time, its crystal strucure has now been established by single‐crystal X‐ray analysis, as the monohydrate, C₂₂H₂₆O₇·H₂O. The bicyclooctane moiety comprises fused cyclopentane and cyclohexenone rings which are almost coplanar. An intermolecular O—H...O hydrogen bond links the 4′‐OH and 5′‐OCH₃ groups along the c axis.     

An intermediate in a new synthesis approach to β‐substituted β‐hydroxy­aspartame

The crystal and molecular structure of 1‐tert‐butyl 4‐ethyl (2′R,3′R,5′R,2S,3S)‐3‐bromo­methyl‐3‐hydroxy‐2‐[(2′‐hydroxy‐2′,6′,6′‐tri­methyl­bi­cyclo­[3.1.1]­hept‐3′‐yl­idene)­amino]­succinate, C₂₁H₃₄BrNO₆, is presented. This compound is an intermediate in the new synthetic route to β‐substituted β‐hydroxy­aspartates, which are blockers of glutamate transport.     

Microwave‐assisted synthesis of 1,3′‐diaza‐flavanone/flavone and their alkyl derivatives with antimicrobial activity

A simple environmentally friendly solid‐phase microwave‐assisted method was used to synthesis of the 1,3′‐diazaflavanone ( 2 ) and 1,3′‐diazaflavone ( 3 ) from the cyclization of 2′‐amino (E)‐3″‐azachalcone ( 1 ). Ten new N‐alkyl (C_5–12,14,15)‐substituted 1,3′‐diazaflavanonium bromides ( 2a–j ) were prepared from compound 2 with corresponding alkyl halides in acetonitrile under reflux. In addition, nine new N,N′‐dialkyl (C_5–12,14)‐substituted 1,3′‐diazaflavonium bromides ( 3a–i ) were also synthesized from compound 3 with corresponding alkyl halides using basic silica in acetonitrile. The antimicrobial activities of compounds 1–3 , 2a–j , and 3a–i were tested against Gram‐positive (G+) (Bacillus subtilis, Staphylococcus epidermidis, Staphylococcus aureus, and Enterococcus faecalis) and Gram‐negative (G?) (Escherichia coli, Klebsiella pneumonia, Pseudomonas aeruginosa, Proteus vulgaris, Salmonella typhimirium, Yersinia pseudotuberculosis, and Enterobacter cloaceae) microorganisms. They showed good antimicrobial activity against the Gram‐positive bacteria tested with the minimal inhibitory concentration values less than 7.8 μg/mL in most cases. The optimum length of the alkyl chain for better and broader activity is situated in the range of 9–12 carbon atoms in the series of compounds 2a–j and five to six carbon atoms in the series of compounds 3a–i . The nonalkylated compounds 1–3 were not effective, as were the ones alkylated with five or six C alkyl groups ( 2a and 2b ) and 8–13 C alkyl groups for N,N′‐dialkyl compounds ( 3c–3i ). The antimicrobial activity increased as the length of the alkyl substitution increased from 8 to 12 carbons in compounds 2a–j . However, antimicrobial activity decreased as the length of the alkyl substitution increased from 7 to 13 carbons in compounds 3c–i . J. Heterocyclic Chem., (2012)     

Two stereoisomeric pentacyclic oxin­dole alkaloids from Uncaria tomentosa: uncarine C and uncarine E

The chloro­form solvate of uncarine C (pteropodine), (1′S,3R,4′aS,5′aS,10′aS)‐1,2,5′,5′a,7′,8′,10′,10′a‐octa­hydro‐1′‐methyl‐2‐oxospiro­[3H‐indole‐3,6′(4′aH)‐[1H]­pyrano­[3,4‐f]indolizine]‐4′‐carboxyl­ic acid methyl ester, C₂₁H₂₄N₂O₄·CHCl₃, has an absolute configuration with the spiro C atom in the R configuration. Its epimer at the spiro C atom, uncarine E (isopteropodine), (1′S,3S,4′aS,5′aS,10′aS)‐1,2,5′,5′a,7′,8′,10′,10′a‐octahydro‐1′‐methyl‐2‐oxospiro[3H‐indole‐3,6′(4′aH)‐[1H]pyrano[3,4‐f]indolizine]‐4′‐carboxylic acid methyl ester, C₂₁H₂₄N₂O₄, has Z′ = 3, with no solvent. Both form intermolecular hydrogen bonds involving only the ox­indole, with N?O distances in the range 2.759 (4)–2.894 (5) Å.     

Proton‐transfer compounds of isonipecotamide with the aromatic dicarboxylic acids 4‐nitrophthalic, 4,5‐dichlorophthalic, 5‐nitroisophthalic and terephthalic acid

The structures of the 1:1 proton‐transfer compounds of isonipecotamide (piperidine‐4‐carboxamide) with 4‐nitrophthalic acid [4‐carbamoylpiperidinium 2‐carboxy‐4‐nitrobenzoate, C₆H₁₃N₂O₈⁺·C₈H₄O₆⁻, (I)], 4,5‐dichlorophthalic acid [4‐carbamoylpiperidinium 2‐carboxy‐4,5‐dichlorobenzoate, C₆H₁₃N₂O₈⁺·C₈H₃Cl₂O₄⁻, (II)] and 5‐nitroisophthalic acid [4‐carbamoylpiperidinium 3‐carboxy‐5‐nitrobenzoate, C₆H₁₃N₂O₈⁺·C₈H₄O₆⁻, (III)], as well as the 2:1 compound with terephthalic acid [bis(4‐carbamoylpiperidinium) benzene‐1,2‐dicarboxylate dihydrate, 2C₆H₁₃N₂O₈⁺·C₈H₄O₄²⁻·2H₂O, (IV)], have been determined at 200 K. All salts form hydrogen‐bonded structures, viz. one‐dimensional in (II) and three‐dimensional in (I), (III) and (IV). In (I) and (III), the centrosymmetric R₂²(8) cyclic amide–amide association is found, while in (IV) several different types of water‐bridged cyclic associations are present [graph sets R₄²(8), R₄³(10), R₄⁴(12), R₃³(18) and R₆⁴(22)]. The one‐dimensional structure of (I) features the common `planar' hydrogen 4,5‐dichlorophthalate anion, together with enlarged cyclic R₃³(13) and R₄³(17) associations. In the structures of (I) and (III), the presence of head‐to‐tail hydrogen phthalate chain substructures is found. In (IV), head‐to‐tail primary cation–anion associations are extended longitudinally into chains through the water‐bridged cation associations, and laterally by piperidinium–carboxylate N—H...O and water–carboxylate O—H...O hydrogen bonds. The structures reported here further demonstrate the utility of the isonipecotamide cation as a synthon for the generation of stable hydrogen‐bonded structures. An additional example of cation–anion association with this cation is also shown in the asymmetric three‐centre piperidinium–carboxylate N—H...O,O′ interaction in the first‐reported structure of a 2:1 isonipecotamide–carboxylate salt.     

New 3,3′[2,2′‐oxy‐bis‐(oxazaborolidine)]‐ethylenes. Structural studies by NMR,X‐ray,and quantum chemistry methods

3,3′‐[2,2′‐Oxy‐bis‐(4S‐methyl, 5R‐phenyl‐1,3,2‐oxazaborolidine)]ethylene ( 4a ) and 3,3′‐[2, 2′‐oxy‐(4S‐methyl‐5R‐phenyl‐1,3,2‐oxazaborolidine)‐ (1,3,2‐benzoxazaborolidine)]ethylene ( 4b ) were synthesized by the reaction of N,N′‐bis‐[(1R,2S)‐norephedrine]oxalyl ( 3a ) or N,N′‐[((1R,2S)‐norephedrine, o‐hydroxyphenylamine]oxalyl ( 3b ) with BH₃‐THF. The molecular structure of these compounds was established by NMR and infrared spectroscopy. The molecular geometry for 4 was studied by means of theoretical methods, resulting in structures that were in total agreement with those obtained by spectroscopy data and X‐ray diffraction. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:513–519, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20151     

Synthesis and Crystal Structure of Two One—dimensional Chain Copper Complexes [Cu（TTA）2（4,4‘’—azpy）] and [Cu（TTA）2（3,3‘’—azpy）

Two copper complexes [Cu(TTA)₂(4,4′‐azpy)] (1) and [Cu‐(TTA)₂(3,3′‐azpy)] (2) (HTTA = 1,1,1‐trifluoro‐3‐(2‐thenoyl)‐acetone, 4,4′‐azpy = 4,4′‐azobispyridine, 3,3′‐azpy = 3,3′‐azobispyridine) were synthesized and characterized. The crystal structures were determined by X‐ray diffraction analysis. The crystal 1 belongs to triclinic with space group P1 , a = 0.8515(2) nm, b = 0.9259(2) nm, c = 0.9468(2) nm, a = 66.126(9)°, β = 79.667(9)°, γ = 90.13(1)°, Z = 1, V = 0.6692(2) nm³, D_c = 3.425 g/cm³, γ = 2.113 mm^?1, F(000) = 694, R₁ = 0.0594, wR₂ = 0.1499. The crystal 2 belongs to monoclinic with space group P2₁/c, a = 1.0661(2) nm, b = 1.4296(3) ran, c = 1.0041(3) nm, β = 114.50(3)°, V = 1.3926(5) nm³, Z = 2, D_c = 1.646 g/ cm³, μ = 1.015 mm^?1, F(000) = 694, R₁, = 0.0535, wR₂ = 0.1113. In the crystals of complexes 1 and 2, the copper atoms have distorted octahedral symmetry. The two compounds possess very similar one‐dimensional linear chains linked through the rodlike 4,4′‐azpy ligands or 3,3′‐azpy ligands.     

Wolves in Sheep's Clothing: μ‐Oxo‐Diiron Corroles Revisited

For well over 20 years, μ‐oxo‐diiron corroles, first reported by Vogel and co‐workers in the form of μ‐oxo‐bis[(octaethylcorrolato)iron] (Mössbauer δ 0.02 mm s^?1, ΔE_Q 2.35 mm s^?1), have been thought of as comprising a pair antiferromagnetically coupled low‐spin Fe^IV centers. The remarkable stability of these complexes, which can be handled at room temperature and crystallographically analyzed, present a sharp contrast to the fleeting nature of enzymatic, iron(IV)‐oxo intermediates. An array of experimental and theoretical methods have now shown that the iron centers in these complexes are not Fe^IV but intermediate‐spin Fe^III coupled to a corrole^.2?. The intramolecular spin couplings in {Fe[TPC]}₂(μ‐O) were analyzed via DFT(B3LYP) calculations in terms of the Heisenberg–Dirac–van Vleck spin Hamiltonian H=J_Fe–corrole(S_Fe?S_corrole)+J_Fe–Fe′(S_Fe?S_Fe′)+J_{Fe′–corrole}(S_Fe′?S_corrole′), which yielded J_Fe–corrole=J_{Fe′–corrole′}=0.355 eV (2860 cm^?1) and J_Fe–Fe′=0.068 eV (548 cm^?1). The unexpected stability of μ‐oxo‐diiron corroles thus appears to be attributable to charge delocalization via ligand noninnocence.     

Hydrogen‐bonded ribbons in ethyl (E)‐3‐[2‐amino‐4,6‐bis(dimethylamino)pyrimidin‐5‐yl]‐2‐cyanoacrylate and 2‐[(2‐amino‐4,6‐di‐1‐piperidylpyrimidin‐5‐yl)methylene]malononitrile

The pyrimidine rings in ethyl (E)‐3‐[2‐amino‐4,6‐bis(dimethylamino)pyrimidin‐5‐yl]‐2‐cyanoacrylate, C₁₄H₂₀N₆O₂, (I), and 2‐[(2‐amino‐4,6‐di‐1‐piperidylpyrimidin‐5‐yl)methylene]malononitrile, C₁₈H₂₃N₇, (II), which crystallizes with Z′ = 2 in the space group, are both nonplanar with boat conformations. The molecules of (I) are linked by a combination of N—H...N and N—H...O hydrogen bonds into chains of edge‐fused R₂²(8) and R₄⁴(20) rings, while the two independent molecules in (II) are linked by four N—H...N hydrogen bonds into chains of edge‐fused R₂²(8) and R₂²(20) rings. This study illustrates both the readiness with which highly‐substituted pyrimidine rings can be distorted from planarity and the significant differences between the supramolecular aggregation in two rather similar compounds.     

Influence of fluorine substitution on the molecular conformation of 3′‐deoxy‐3′‐fluoro‐5‐methyluridine

Fluorine substitutions on the furanose ring of nucleosides are known to strongly influence the conformational properties of oligonucleotides. In order to assess the effect of fluorine on the conformation of 3′‐deoxy‐3′‐fluoro‐5‐methyluridine (^RT^F), C₁₀H₁₃FN₂O₅, we studied its stereochemistry in the crystalline state using X‐ray crystallography. The compound crystallizes in the chiral orthorhombic space group P2₁2₁2₁ and contains two symmetry‐independent molecules (A and B) in the asymmetric unit. The furanose ring in molecules A and B adopts conformations between envelope (²E, 2′‐endo, P = 162°) and twisted (²T₃, 2′‐endo and 3′exo, P = 180°), with pseudorotation phase angles (P) of 164.3 and 170.2°, respectively. The maximum puckering amplitudes, ν_max, for molecules A and B are 38.8 and 36.1°, respectively. In contrast, for 5‐methyluridine (^RT^OH), the value of P is 21.2°, which is between the ³E (3′‐endo, P = 18.0°) and ³T₄ (3′‐endo and 4′‐exo, P = 36°) conformations. The value of ν_max for ^RT^OH is 41.29°. Molecules A and B of ^RT^F generate respective helical assemblies across the crystallographic 2₁‐screw axis through classical N—H…O aand O—H…O hydrogen bonds supplemented by C—H…O contacts. Adjacent parallel helices of both molecules are linked to each other via O—H…O and O…π interactions.     

catena‐Poly[[(2,2′‐biimidazole‐κ2N,N′)chloro­copper(II)]‐μ‐chloro]

In the polymeric title compound, [CuCl₂(C₆H₆N₄)]_n, each Cu^II ion is five‐coordinated by four basal atoms (two N atoms from a 2,2′‐biimidazole mol­ecule and two Cl⁻ anions) and one axial Cl⁻ anion, in a distorted square‐pyramidal coordination geometry. Cl⁻ anions bridge the {Cu(C₆H₆N₄)Cl} units into one‐dimensional linear chains, which are reinforced by π–π inter­actions. Adjacent linear chains are linked by N—H⋯Cl hydrogen bonds, resulting in a grid layer. The hydrogen‐bonding pattern can be described in graph‐set notation as C(9)R(9)R(14). This study extends our knowledge of the multifunctional properties of the 2,2′‐biimidazole ligand and of the coordination stereochemistry of copper(II).     

Bis(dichlorosilyl)methylamine – Synthesis,Crystal Structure,and Conformational Analysis in the Gas Phase

A straightforward preparation has been found for bis(dichlorosilyl)methylamine, (SiHCl₂)₂NMe ( 1 ), involving reaction between H₂NMe and an excess of SiHCl₃, dissolved either in pentane or THF at 253 K. 1 and a side‐product, 1,3,5‐trichloro‐2,4,6‐trimethylcyclotrisilazane, (–SiHCl–NMe–)₃ ( 2 ), were identified by elemental analysis, mass spectrometry and ¹H‐NMR‐spectroscopy. Some physical, NMR‐ and IR spectroscopical properties of 1 were determined. The molecular and crystal structure of 1 was investigated by single crystal X‐ray diffraction. Selected structural parameters: r(Si–N) 169.7(5), r(Si–Cl) 203.1(2)–204.4(2), r(C–N) 150.0(8) pm; a(SiNSi) 123.6(3), a(SiNC) 118.3(4)/118.0(4)°. Ab initio force field data and infrared intensities were calculated for four conformers of 1 . Comparison of the observed and calculated IR spectra favours the two structures found ab initio provided that their actual abundancies are different from those calculated.