Rapid Non‐Crosslinking Aggregation of DNA‐Functionalized Gold Nanorods and Nanotriangles for Colorimetric Single‐Nucleotide Discrimination

Gold nanoparticles modified with DNA duplexes are rapidly and spontaneously aggregated at high ionic strength. In contrast, this aggregation is greatly suppressed when the DNA duplex has a single‐base mismatch or a single‐nucleotide overhang located at the outermost surface of the particle. These colloidal features emerge irrespective of the size and composition of the particle core; however, the effects of the shape remain unexplored. Using gold nanorods and nanotriangles (nanoplatelets), we show herein that both remarkable rapidity in colloidal aggregation and extreme susceptibility to DNA structural perturbations are preserved, regardless of the shape and aspect ratio of the core. It is also demonstrated that the DNA‐modified gold nanorods and nanotriangles are applicable to naked‐eye detection of a single‐base difference in a gene model. The current study corroborates the generality of the unique colloidal properties of DNA‐functionalized nanoparticles, and thus enhances the feasibility of their practical use.     

一种同时检测多个单核苷酸多态性位点的新方法

对人类基因组中的单核苷酸多态性进行快速而准确的定位和分型是人类基因组计划的重要内容。本文利用SNaPshot试剂盒，建立了一种以多重引物延伸为基础、可同时对多个已知单核苷酸多态性位点进行快速而准确的遗传分型的方法。利用这一方法检测了20例大肠癌病人肿瘤组织中错配修复基因hMLHl和抑癌基因P53的8个单核苷酸多态性位点(包括5个突变热点)，其中一例发现错配修复基因hMLHl的384位密码子处发生GTT→GAT的杂合性突变。对该基因外显子的直接测序结果与SNaPshot检测结果完全吻合，充分证明了该方法的可靠性。     

单核苷酸多态性电化学生物传感检测研究进展

作为第3代遗传标记物,单核苷酸多态性分析在实现遗传疾病的早期医学诊断以及发病机理研究等方面具有非常重要的意义,已成为当今分析化学和生命科学研究的热点领域。电化学生物传感器因具有灵敏、检测装置轻便价廉且易于微型化、自动化等优点,近年在单核苷酸多态性检测分析中得到了迅速的发展。该文简述了单核苷酸多态性生物传感检测的识别原理、电化学生物传感检测方法及信号放大策略,综述了近年来的研究进展,并对未来的发展方向作了展望。     

Efficient Discrimination of Single Nucleotide Polymorphisms (SNPs) Using Oligonucleotides Modified with C5‐Pyrene‐Functionalized DNA and Flanking Locked Nucleic Acid (LNA) Monomers

Oligodeoxyribonucleotides modified with 5‐[3‐(1‐pyrenecarboxamido)propynyl]‐2′‐deoxyuridine monomer X and proximal LNA monomers display higher affinity for complementary DNA, more pronounced increases in fluorescence emission upon DNA binding, and improved discrimination of SNPs at non‐stringent conditions, relative to the corresponding LNA‐free probes across a range of sequence contexts. The results reported herein suggest that the introduction of LNA monomers influences the position of nearby fluorophores via indirect conformational restriction, a characteristic that can be utilized to develop optimized fluorophore‐labeled probes for SNP‐discrimination studies.     

DNA Dangling‐End‐Induced Colloidal Stabilization of Gold Nanoparticles for Colorimetric Single‐Nucleotide Polymorphism Genotyping

A single‐nucleotide polymorphism (SNP) detection method was developed by combining single‐base primer extension and salt‐induced aggregation of gold nanoparticles densely functionalized with double‐stranded DNA (dsDNA‐AuNP). The dsDNA‐AuNPs undergo rapid aggregation in a medium of high ionic strength, whereas particles having a single‐base protrusion at the outermost surface disperse stably, allowing detection of a single‐base difference in length by color changes. When SNP typing primers are used as analytes to hybridize to the single‐stranded DNA on the AuNP surface, the resulting dsDNA‐AuNP works as a visual indicator of single‐base extension. A set of four extension reaction mixtures is prepared using each of ddNTPs and subsequently subjected to the aggregation assay. Three mixtures involving ddNTP that is not complementary to the SNP site in the target produce the aggregates that exhibit a purple color. In contrast, one mixture with the complementary ddNTP generates the single‐base protrusion and appears red. This method could potentially be used in clinical diagnostics for personalized medicine.     

Nanofibers Self‐assembled from Structural Complementary Borono‐decapeptides

A series of structural complementary decapeptides with phenyl boronic acid tails or borono‐decapeptides (BPs) were designed and synthesized for supramolecular self‐assembly. After dissolving these borono‐decapeptides in deionized (DI) water, well‐defined nanofibers were formed in BP1 (B(OH)₂VEKELVKEKL‐OH) and BP3 (B(OH)₂AELELARARL‐OH). It was found that the self‐assembled borono‐decapeptide BP1 and BP3 have a parallel β‐sheet conformation in the formed nanofibers. The strategy demonstrated here shows a great prospect in preparation of well‐ordered nanofibers via rationally designing the molecular structures of peptides.

     

A Rotational BODIPY Nucleotide: An Environment‐Sensitive Fluorescence‐Lifetime Probe for DNA Interactions and Applications in Live‐Cell Microscopy

Fluorescent probes for detecting the physical properties of cellular structures have become valuable tools in life sciences. The fluorescence lifetime of molecular rotors can be used to report on variations in local molecular packing or viscosity. We used a nucleoside linked to a meso‐substituted BODIPY fluorescent molecular rotor ( dC^bdp ) to sense changes in DNA microenvironment both in vitro and in living cells. DNA incorporating dC^bdp can respond to interactions with DNA‐binding proteins and lipids by changes in the fluorescence lifetimes in the range 0.5–2.2 ns. We can directly visualize changes in the local environment of exogenous DNA during transfection of living cells. Relatively long fluorescence lifetimes and extensive contrast for detecting changes in the microenvironment together with good photostability and versatility for DNA synthesis make this probe suitable for analysis of DNA‐associated processes, cellular structures, and also DNA‐based nanomaterials.     

Functionalizing Designer DNA Crystals with a Triple‐Helical Veneer

DNA is a very useful molecule for the programmed self‐assembly of 2D and 3D nanoscale objects. 1 The design of these structures exploits Watson–Crick hybridization and strand exchange to stitch linear duplexes into finite assemblies. 2 – 4 The dimensions of these complexes can be increased by over five orders of magnitude through self‐assembly of cohesive single‐stranded segments (sticky ends). 5 , 6 Methods that exploit the sequence addressability of DNA nanostructures will enable the programmable positioning of components in 2D and 3D space, offering applications such as the organization of nanoelectronics, 7 the direction of biological cascades, 8 and the structure determination of periodically positioned molecules by X‐ray diffraction. 9 To this end we present a macroscopic 3D crystal based on the 3‐fold rotationally symmetric tensegrity triangle 3 , 6 that can be functionalized by a triplex‐forming oligonucleotide on each of its helical edges.     

Single‐Chain Polymer Self‐Assembly Using Complementary Hydrogen Bonding Units

A triblock copolymer containing the complementary hydrogen bonding recognition pair ureidoguanosine–diaminonaphthyridine (UG–DAN) as pendant functional groups is synthesized using ring‐opening metathesis polymerization (ROMP). The norbornene‐based DAN monomer is shown to allow for a controlled polymerization when polymerized in the presence of a modi­fied‐UG molecule that serves as a protecting group, subsequently allowing for the fabrication of functionalized triblock copolymers. The self‐assembly of the copolymers was characterized using dynamic light scattering and ¹H NMR spectroscopy. It is demonstrated that the polymers self‐assemble via complementary hydrogen bonding motifs even at low dilutions, indicating intramolecular interactions.

     

A Peptide Nucleic Acid (PNA) Heteroduplex Probe Containing an Inosine–Cytosine Base Pair Discriminates a Single‐Nucleotide Difference in RNA

Selective discrimination of a single‐nucleotide difference in single‐stranded DNA or RNA remains a challenge with conventional DNA or RNA probes. A peptide nucleic acid (PNA)‐derived probe, in which PNA forms a pseudocomplementary heteroduplex with inosine‐containing DNA or RNA, effectively discriminates a single‐nucleotide difference in a closely related group of sequences of single‐stranded DNA and/or RNA. The pseudocomplementary PNA heteroduplex is easily converted to a fluorescent probe that distinctively detects a member of highly homologous let‐7 microRNAs.     

A Single‐Wavelength‐Emitting Ratiometric Probe Based on Phototriggered Fluorescence Switching of Graphene Quantum Dots

Ratiometric fluorescent probes are of great importance in research, because a built‐in correction for environmental effects can be provided to reduce background interference. However, the traditional ratiometric fluorescent probes require two luminescent materials with different emission bands. Herein a novel ratiometric probe based on a single‐wavelength‐emitting material is reported. The probe works by regulating the luminescent property of graphene quantum dots with UV illumination as activator. The ratiometric sensor shows high sensitivity and specificity for iron ions. Moreover, the ratiometric sensor was successfully employed to monitor ferritin levels in Sprague Dawley rats with chemical‐induced acute liver damage. The proposed single‐wavelength ratiometric fluorescent probe may greatly broaden the applicability of ratiometric sensors in diagnostic devices, medical applications, and analytical chemistry.     

Fluorescence Detection of Microcapsule‐Type Self‐Healing,Based on Aggregation‐Induced Emission

An extrinsic self‐healing coating system containing tetraphenylethylene (TPE) in microcapsules was monitored by measuring aggregation‐induced emission (AIE). The core healing agent comprised of methacryloxypropyl‐terminated polydimethylsiloxane, styrene, benzoin isobutyl ether, and TPE was encapsulated in a urea‐formaldehyde shell. The photoluminescence of the healing agent in the microcapsules was measured that the blue emission intensity dramatically increased and the storage modulus also increased up to 10⁵ Pa after the photocuring. These results suggested that this formulation might be useful as a self‐healing material and as an indicator of the self‐healing process due to the dramatic change in fluorescence during photocuring. To examine the ability of the healing agent to repair damage to a coating, a self‐healing coating containing embedded microcapsules was scribed with a razor. As the healing process proceeded, blue light fluorescence emission was observed at the scribed regions. This observation suggested that self‐healing could be monitored using the AIE fluorescence.

     

Manganese‐Induced Triplet Blinking and Photobleaching of Single Molecule Cyanine Dyes

Irradiation of solutions of the cyanine dyes Cy3, Cy3B, and Cy5 in the presence of Mn²⁺ causes an increase in the yield of formation of the triplet state of the dye. This results in increased photobleaching and triplet blinking. Experiments with other divalent ions and paramagnetic molecules suggest that the enhancement in the intersystem‐crossing rate is related to the paramagnetic nature of the Mn²⁺ cation. The results are consistent with a model in which the formation of a weak collisional complex between the dye and the ion results in mixing of the singlet and triplet states of the dye. These findings are particularly significant in single‐molecule spectroscopy and super‐resolution imaging methods, in which photobleaching and blinking play an important role.