O-O bond formation in the S(4) state of the oxygen-evolving complex in photosystem II

Based on recent X-ray structures of the oxygen-evolving complex in photosystem II, quantum chemical geometry optimizations of several thousand structures have been performed in order to elucidate the mechanism for dioxygen formation. Many of the results of these calculations have been presented previously. The energetically most stable structure of the S(4) state has been used in the present study to investigate essentially all the possible ways the O--O bond can be formed in this structure. A key feature, emphasized previously, of the S(4) state is that an oxygen radical ligand is present rather than an Mn(V) state. Previous studies have indicated that this oxygen radical can form an O--O bond by an attack from a water molecule in the second coordination shell. The present systematic investigation has led to a new type of mechanism that is significantly favored over the previous one. A calculated transition-state barrier of 12.5 kcal mol(-1) was found for this mechanism, whereas the best previous results gave 18-20 kcal mol(-1). A requirement on the spin alignment for a low barrier is formulated.     

Hydroxyl radical formation by O-O bond homolysis in peroxynitrous acid

Peroxynitrite decay in weakly alkaline media occurs by two concurrent sets of pathways which are distinguished by their reaction products. One set leads to net isomerization to NO(3)(-) and the other set to net decomposition to O(2) plus NO(2)(-). At sufficiently high peroxynitrite concentrations, the decay half-time becomes concentration-independent and approaches a limiting value predicted by a mechanism in which reaction is initiated by unimolecular homolysis of the peroxo O-O bond, i.e., the following reaction: ONOOH --> (*)OH + (*)NO(2). This dynamical behavior excludes alternative postulated mechanisms that ascribe decomposition to bond rearrangement within bimolecular adducts. Nitrate and nitrite product distributions measured at very low peroxynitrite concentrations also correspond to predictions of the homolysis model, contrary to a recent report from another laboratory. Additionally, (1) the rate constant for the reaction ONOO(-) --> (*)NO + (*)O(2)(-), which is critical to the kinetic model, has been confirmed, (2) the apparent volume of activation for ONOOH decay (DeltaV() = 9.7 +/- 1.4 cm(3)/mol) has been shown to be independent of the concentration of added nitrite and identical to most other reported values, and (3) complex patterns of inhibition of O(2) formation by radical scavengers, which are impossible to rationalize by alternative proposed reaction schemes, are shown to be quantitatively in accord with the homolysis model. These observations resolve major disputes over experimental data existing in the literature; despite extensive investigation of these reactions, no verifiable experimental evidence has been advanced that contradicts the homolysis model.     

Electronic design criteria for O-O bond formation via metal-oxo complexes

Metal-oxos are critical intermediates for the management of oxygen and its activation. The reactivity of the metal-oxo is central to the formation of O-O bonds, which is the essential step for oxygen generation. Two basic strategies for the formation of O-O bonds at metal-oxo active sites are presented. The acid-base (AB) strategy involves the attack of a nucleophilic oxygen species (e.g., hydroxide) on an electrophilic metal-oxo. Here, active-site designs must incorporate the assembly of a hydroxide (or water) proximate to a high-valent metal-oxo of even d electron count. For the radical coupling (RC) strategy, two high-valent metal-oxos of an odd d electron count are needed to drive O-O coupling. This Forum Article focuses on the different electronic structures of terminal metal-oxos that support AB and RC strategies and the design of ligand scaffolds that engender these electronic structures.     

A computational study of O-O bond formation catalyzed by mono- and bis-MnIV-corrole complexes

A detailed computational study of O-O bond formation, catalyzed by monomeric and dimeric Mn-corrole complexes, is reported. The model explicitly takes into account the solvent, with respect to the first and second coordination spheres, while the bulk solvent is described by the polarizable continuum model. Two reaction mechanisms are proposed and computationally characterized: the concerted and the two-step mechanisms. The concerted mechanism is based on a OH--MnIVO interaction via the outer-sphere pathway involving the bridging solvent molecules in the first coordinating sphere. The two-step mechanism is proposed to operate via the coordination of a hydroxide to the MnIV ion, forming a MnO(OH)--corrole complex with a strongly nonplanar corrole ligand. Comparison of the proposed mechanisms with available experimental data is performed.     

Kinetic studies of photosystem II in photosynthesis

Abstract— It appears that even if some kinetic aspects of the activation and stimulation phenomena of photosystem II remain not understood. the only interpretation we can propose involves the addition of the effect of two photoreactions on the same photochemical center. The main arguments we developed in favour of this hypothesis are: (1) the formation of one atom of oxygen requires the addition of the effect of two photo-reactions (one photoreaction per electron). (2) after a dark period two quanta must be absorbed by the same photochemical center in order to produce oxygen. (3) the existence of a form of the photochemical substrate in which energy is stored is proved by the fact that. after a preillumination by two flashes, the quantum requirement for the production of one molecule of oxygen can reach a value almost two times lower than the quantum requirement measured in stationary conditions.     

Reactivity of mononuclear alkylperoxo copper(II) complex. O-O bond cleavage and C-H bond activation

A detailed reactivity study has been carried out for the first time on a new mononuclear alkylperoxo copper(II) complex, which is generated by the reaction of copper(II) complex supported by the bis(pyridylmethyl)amine tridentate ligand containing a phenyl group at the 6-position of the pyridine donor groups and cumene hydroperoxide (CmOOH) in CH3CN. The cumylperoxo copper(II) complex thus obtained has been found to undergo homolytic cleavage of the O-O bond and induce C-H bond activation of exogenous substrates, providing important insights into the catalytic mechanism of copper monooxygenases.     

Theoretical clues to the mechanism of dioxygen formation at the oxygen-evolving complex of photosystem II

The mechanism of the generation of dioxygen at the oxygen-evolving complex (OEC) of photosystem II (PSII), a crucial step in photosynthesis, is still under debate. The simplest unit present in the OEC that can produce O2 is a dinuclear oxo-bridge manganese complex within the tetranuclear Mn4 cluster. In this paper we report a theoretical study of the model complexes [Mn2(mu-O)2(NH3)6(H2O)2]n+ (n = 2-5), for which density functional calculations have been carried out for several electronic configurations. The molecular orbital picture deduced from the calculations indicates that one-electron oxidation of the Mn2IV,IV/(O2-)2 complex (n = 4) mostly affects the oxygen atoms, thus ruling out the existence of a MnV oxidation state in this context, while the incipient formation of an O-O bond in the O2(3-) transient species evolves exothermally toward the dissociation of dioxygen and a Mn2II,III couple. These results identify the electronic features that could be needed to enable an intramolecular mechanism of oxygen-oxygen bond formation to exist at the OEC during photosynthesis.     

Theoretical studies on N-O or N-N bond formation from aryl azide catalyzed by iron(II) bromide complex

DFT calculations have been carried out to study the reaction mechanism on N-O or N-N bond formation from aryl azide catalyzed by iron(II) bromide complex. A favorable reaction pathway is proposed to account for the construction of the core structure of 2H-indazoles or 2,1-benzisoxazoles.     

Basic ancillary ligands promote O-O bond formation in iridium-catalyzed water oxidation: a DFT study

The cationic iridium complex [Ir(OH(2))(2)(phpy)(2)](+) (phpy = o-phenylpyridine) is among the most efficient mononuclear catalysts for water oxidation. The postulated active species is the oxo complex [Ir(O)(X)(phpy)(2)](n), with X = OH(2) (n = +1), OH(-) (n = 0) or O(2-) (n = -1), depending on the pH. The reactivity of these species has been studied computationally at the DFT(B3LYP) level. The three [Ir(O)(X)(phpy)(2)](n) complexes have an electrophilic Ir(v)-oxo moiety, which yields an O-O bond by undergoing a nucleophilic attack of water in the critical step of the mechanism. In this step, water transfers one proton to either the Ir(V)-oxo moiety or the ancillary X ligand. Five different reaction pathways associated with this acid/base mechanism have been characterized. The calculations show that the proton is preferably accepted by the X ligand, which plays a key role in the reaction. The higher the basicity of X, the lower the energy barrier associated with O-O bond formation. The anionic species, [Ir(O)(2)(phpy)(2)](-), which has the less electrophilic Ir(V)-oxo moiety but the most basic X ligand, promotes O-O bond formation through the lowest energy barrier, 14.5 kcal mol(-1). The other two active species, [Ir(O)(OH)(phpy)(2)] and [Ir(O)(OH(2))(phpy)(2)](+), which have more electrophilic Ir(V)-oxo moieties but less basic X ligands, involve higher energy barriers, 20.2 kcal mol(-1) and 25.9 kcal mol(-1), respectively. These results are in good agreement with experiments showing important pH effects in similar catalytic systems. The theoretical insight given by the present study can be useful in the design of more efficient water oxidation catalysts. The catalytic activity may increase by using ligand scaffolds bearing internal bases.     

Quantum-chemical calculations of O-O bond strengths in organic hydrotrioxides

The O-O bond strengths in ten organic hydrotrioxides have been calculated by semiempirical MNDO and AMI methods. The RO-OOH bond strength is independent of the nature of substituent R and is equal to 20.4±1.1 kcal mol^–1 (AM1). The influence of the inductive effect of substituent R on the value ofD(ROO-OH) has been established.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1129–1131, May, 1996.     

A structure-consistent mechanism for dioxygen formation in photosystem II

In recent DFT studies a new mechanism for O-O bond formation at the oxygen evolving center (OEC) in photosystem II has been suggested. With the structure of the S(4) state required for that mechanism, the structures of the lower S states are investigated herein by adding protons and electrons. A model was used including the full amino acids for the ones ligating the OEC, and in which the backbone positions were held fixed from the X-ray structure. The only charged second-shell ligand Arg357 was also included. An optimized structure for the S(1) state was reached with a large similarity to one of those suggested by EXAFS. A full catalytic cycle was derived which can rationalize the structural relaxation in the S(2) to S(3) transition, and the fact that only an electron leaves in the transition before. Water is suggested to bind to the OEC in the S(2) to S(3), and S(4) to S(0) transitions. A new possibility for water exchange is suggested from the final energy diagram. The optimal O-O bond formation occurs between an oxygen radical and an oxo ligand. The alternative mechanism, where the oxygen radical reacts with an external water, has a barrier about 20 kcal mol(-1) higher.     

Recent theoretical studies of water oxidation in photosystem II

In the present mini-review, computational work over the past decade on water oxidation in photosystem II (PSII) is summarized. The size of the chemical model used for the oxygen evolving complex (OEC) has during this time increased from the initial 20 atoms to the present day 220 atoms. The electronic structure methods used have during the same period only undergone minor improvements. It is concluded that the results have now reached a high level of convergence and the predictions for both the structure of the OEC and the O-O bond formation mechanism are most probably of higher accuracy than presently available from experiments.     

New reaction model for O-O bond formation and O2 evolution catalyzed by dinuclear manganese complex

A new mechanism of the oxygen evolving reaction catalyzed by [H(2)O(terpy)Mn(μ-O)(2)Mn(terpy)OH(2)](3+) is proposed by using density functional theory. This proton coupled electron transfer (PCET) model shows reasonable barriers. Because in experiments excess oxidants (OCl(-) or HSO(5)(-)) are required to evolve oxygen from water, we considered the Mn(2) complex neutralized by three counterions. Structure optimization made the coordinated OCl(-) withdraw a H(+) from the water ligand and produces the reaction space for H(2)O(2) formation with the deprotonated OH(-) ligand. The reaction barrier for the H(2)O(2) formation from OH(-) and protonated OCl(-) depends significantly on the system charge and is 14.0 kcal/mol when the system is neutralized. The H(2)O(2) decomposes to O(2) during two PCET processes to the Mn(2) complex, both with barriers lower than 12.0 kcal/mol. In both PCET processes the spin moment of transferred electrons prefers to be parallel to that of Mn 3d electrons because of the exchange interaction. This model thus explains how the triplet O(2) molecule is produced.     

Metal-bridging mechanism for O-O bond cleavage in cytochrome C oxidase

Density functional theory (B3LYP) has been applied to large models of the Fe(II)-Cu(I) binuclear center in cytochrome oxidase, investigating the mechanism of O-O bond cleavage in the mixed valence form of the enzyme. To comply with experimental information, the O(2) molecule is assumed to be bridging between iron and copper during the O-O bond cleavage, leading to the formation of a ferryl-oxo group and a cupric hydroxide. In accord with previous suggestions, the calculations show that it is energetically feasible to take the fourth electron needed in this reaction from the tyrosine residue that is cross-linked to one of the copper ligands, resulting in the formation of a neutral tyrosyl radical. However, the calculations indicate that simultaneous transfer of an electron and a proton from the tyrosine to dioxygen during bond cleavage leads to a barrier more than 10 kcal/mol higher than that experimentally determined. This may be overcome in two ways. If an extra proton in the binuclear center assists in the mechanism, the calculated reaction barrier agrees with experiment. Alternatively, the fourth electron might initially be supplied by a residue in the vicinity other than the tyrosine.     

Theoretical studies on the bifunctionality of chiral thiourea-based organocatalysts: competing routes to C-C bond formation

The mechanism of enantioselective Michael addition of acetylacetone to a nitroolefin catalyzed by a thiourea-based chiral bifunctional organocatalyst is investigated using density functional theory calculations. A systematic conformational analysis is presented for the catalyst, and it is shown that both substrates coordinate preferentially via bidentate hydrogen bonds. The deprotonation of the enol form of acetylacetone by the amine of the catalyst is found to occur easily, leading to an ion pair characterized by multiple H-bonds involving the thiourea unit as well. Two distinct reaction pathways are explored toward the formation of the Michael product that differ in the mode of electrophile activation. Both reaction channels are shown to be consistent with the notion of noncovalent organocatalysis in that the transition states leading to the Michael adduct are stabilized by extensive H-bonded networks. The comparison of the obtained energetics for the two pathways allows us to propose an alternative mechanistic rationale for asymmetric C-C bond forming reactions catalyzed by bifunctional thiourea derivatives. The origin of enantioselectivity in the investigated reaction is also discussed.     

Theoretical studies on heats of formation,detonation properties,and bond dissociation energies of monofurazan derivatives

The heats of formation (HOFs) for a series of monofurazan derivatives were calculated by using density functional theory. It is found that the ? CN or ? N₃ group plays a very important role in increasing the HOF values of the furazan derivatives. The detonation velocities and detonation pressures of the furazan derivatives are evaluated at two different levels. The results show that the ? NF₂ group is very helpful for enhancing the detonation performance for the furazan derivatives, but the case is quite the contrary for the ? CH₃ group. An analysis of the bond dissociation energies and bond orders for the weakest bonds indicate that the substitutions of ? CN group are favorable and enhances the thermal stability of the furazan derivatives, but the ? NO₂ groups produce opposite effects. These results provide basic information for the molecular design of novel high‐energy density materials. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Reversible O-O bond cleavage in copper-dioxygen isomers: impact of anion basicity

Low-temperature oxygenation of copper(I) complexes of N,N,N',N'-tetraethylpropane-1,3-diamine yields solutions containing both mu-eta2:eta2-peroxodicopper(II) (P) and bis(mu-oxo)dicopper(III) (O) valence isomers. The P/O equilibrium position depends on the nature of the counteranion; P is favored with more basic anions. Titration and EXAFS experiments as well as DFT calculations suggest that axial donation from a sulfonate anion to the copper centers imparts an electronic/electrostatic bias toward the P isomer.     

Solvation enthalpies of free radicals: O-O bond strength in di-tert-butylperoxide.

The photolysis reaction of di-tert-butylperoxide was studied in various solvents by photoacoustic calorimetry (PAC). This technique allows the determination of the enthalpy of this homolysis reaction, which by definition corresponds to the O-O bond dissociation enthalpy of the peroxide in solution, DHsin(degrees)(O-O). The derived value from these experiments in benzene, 156.7 +/- 9.9 kJ mol(-1), is very similar to a widely accepted value for the gas-phase bond dissociation enthalpy, DH(degrees)(O-O) = 159.0 +/- 2.1 kJ mol(-1). However, when the PAC-based value is used together with auxiliary experimental data and Drago's ECW model to estimate the required solvation terms, it leads to 172.3 +/- 10.2 kJ mol(-1) for the gas-phase bond dissociation enthalpy. This result, significantly higher than the early literature value, is however in excellent agreement with a recent gas-phase determination of 172.5 +/- 6.6 kJ mol(-1). The procedure to derive the gas-phase DH(degrees)(O-O) was tested by repeating the PAC experiments in carbon tetrachloride and acetonitrile. The average of the values thus obtained was DH(degrees)(O-O) = 179.6 +/- 4.5 kJ mol(-1), confirming that the early gas-phase result is a lower limit. More importantly, the present study questions the usual assumption that the solvation terms of homolysis reactions producing free radicals in solution should cancel, and suggests a methodology to estimate solvation enthalpies of free radicals.