Formation of fibrillar aggregates in concentrated solutions of rigid-chain amphiphilic macromolecules with fixed torsion and bend angles

The molecular-dynamics method is used to study solutions of amphiphilic macromolecules with a local helical structure. A deterioration in the solvent quality in concentrated solutions of these macromolecules leads to the formation of intermolecular fibrillar helix bundles with approximately the same lengths and aggregation numbers. The number of chains in a bundle is determined by parameters that characterize the local structure and is weakly dependent on the length of the macromolecule and the volume fraction of the polymer in the solution. In racemic mixtures of these macromolecules, a deterioration in the solvent quality leads to effective demixing; that is, the resultant fibrillar bundles generally contain macromolecules of exclusively the same chirality.     

Theory of crosslinked bundles of helical filaments: intrinsic torques in self-limiting biopolymer assemblies

Inspired by the complex influence of the globular crosslinking proteins on the formation of biofilament bundles in living organisms, we study and analyze a theoretical model for the structure and thermodynamics of bundles of helical filaments assembled in the presence of crosslinking molecules. The helical structure of filaments, a universal feature of biopolymers such as filamentous actin, is shown to generically frustrate the geometry of crosslinking between the "grooves" of two neighboring filaments. We develop a coarse-grained model to investigate the interplay between the geometry of binding and mechanics of both linker and filament distortion, and we show that crosslinking in parallel bundles of helical filaments generates intrinsic torques, of the type that tend to wind the bundle superhelically about its central axis. Crosslinking mediates a non-linear competition between the preference for bundle twist and the size-dependent mechanical cost of filament bending, which in turn gives rise to feedback between the global twist of self-assembled bundles and their lateral size. Finally, we demonstrate that above a critical density of bound crosslinkers, twisted bundles form with a thermodynamically preferred radius that, in turn, increases with a further increase in crosslinking bonds. We identify the stiffness of crosslinking bonds as a key parameter governing the sensitivity of bundle structure and assembly to the availability and affinity of crosslinkers.     

Compactization of rigid-chain amphiphilic macromolecules with local helical structure

Conformational characteristics of amphiphilic macromolecules with secondary local helical structuring are studied by the method of molecular dynamics for different properties of a helix (bending angles between neighboring vectors of the bond and internal rotation angle) and different rigidities of its fixation. Extended helices with high distances between helical turns and dense helices in which neighboring turns directly adjoin each other are studied. As the quality of a solvent deteriorates, extended helices experience a well-pronounced coil-globule transition, whose amplitude increases with an increase in chain rigidity, while the dimensions of dense helices gradually change. In a poor solvent, extended helices formed “collagen-like” structures, flexible chains of dense helices produce hairpin structures, and rigid macromolecules of dense helices form rodlike globules with an almost ideal local helical order. Independently of helix parameters, a deterioration in solvent quality leads to stabilization of the local secondary structure.     

Synthesis, characterization, and folding behavior of beta-amino acid derived polyisocyanides

Helical polymers of isocyanopeptides derived from beta-amino acids have been synthesized and their architectures have been studied in detail. Similar to their alpha-amino acid analogues, the helical conformation in these macromolecules is stabilized by internal hydrogen-bonding arrays along the polymeric backbone. Unexpectedly, the flexibility of the beta-peptide side arms results in a rearrangement of the initial macromolecular architecture, leading to a more stable helical structure possessing a better defined hydrogen-bonding pattern, as was concluded from IR and temperature-dependent circular dichroism studies. Based on these results we propose a dynamic helical model for the beta-amino acid derived polyisocyanopeptides; this model is in contrast to the kinetically stable helical macromolecules that are formed upon polymerization of alpha-amino acid based isocyanopeptides.     

Shortcuts for Electron-Transfer through the Secondary Structure of Helical Oligo-1,2-Naphthylenes

Atropisomeric 1,2-naphthylene scaffolds provide access to donor–acceptor compounds with helical oligomer-based bridges, and transient absorption studies revealed a highly unusual dependence of the electron-transfer rate on oligomer length, which is due to their well-defined secondary structure. Close noncovalent intramolecular contacts enable shortcuts for electron transfer that would otherwise have to occur over longer distances along covalent pathways, reminiscent of the behavior seen for certain proteins. The simplistic picture of tube-like electron transfer can describe this superposition of different pathways including both the covalent helical backbone, as well as noncovalent contacts, contrasting the wire-like behavior reported many times before for more conventional molecular bridges. The exquisite control over the molecular architecture, achievable with the configurationally stable and topologically defined 1,2-naphthylene-based scaffolds, is of key importance for the tube-like electron transfer behavior. Our insights are relevant for the emerging field of multidimensional electron transfer and for possible future applications in molecular electronics.     

Matrix polymerization of aniline in the presence of polyamides containing sulfo acid groups

The matrix synthesis of polyaniline in the presence of water-soluble aromatic polyamides containing sulfo acid groups has been studied. It has been shown that the nature of polyacid and the concentration of reagents affect the shape and dynamics of a change in absorption spectra. The S-shaped profile of kinetic curves for spectra variation and the experiments on the seed polymerization provide evidence for the autocatalytic character of polymerization. It has been concluded that, depending on the nature of polyacid, polymer complexes form in which polyaniline macromolecules are situated along main chains of polyacid macromolecules (the two-stream structure) or appear as side chains of polyacid macromolecules (the comb-shape structure). In the latter case, polyaniline macromolecules serve as ionic bridges crosslinking polyacid macromolecules, as is confirmed by the viscometric study of solutions in the course of polymerization.     

Secondary structure of globules of copolymers consisting of amphiphilic and hydrophilic units: Effect of potential range

The relation of the coil-globule transition in macromolecules consisting of amphiphilic and hydrophilic monomer units to the radius of action of the interaction potential is investigated by the method of computer-assisted experiments. The internal structure of globules formed by such macromolecules is significantly dependent on the radius of action of the potential. In the case of the long-range potential, the globule is characterized by the blob structure, while in the case of the short-range potential, a quasi-helical structure forms. In this structure, the skeleton of a macromolecule forms a helical turn, and the direction of twisting may vary from one turn to another. The coil-globule transition in such macromolecules proceeds through formation of the necklace conformation from quasi-helical micelle beads. For sufficiently long macromolecules, the dimensions of such globules are linearly dependent on the degree of polymerization.     

Stereospecific Polymerization and Chiral Crystallization

Configurationally and conformationally specific polymerization processes which lead to helical macromolecules can be successfully carried out when monomer structure, polymerization mechanism, and spatial restrictions for monomer addition are all carefully considered. Under certain conditions, optically active polymers having a single helical screw sense can be prepared. Surprisingly, the chiral crystallization of certain inorganic salts has much in common with stereospecific polymerization mentioned above. Achiral sodium chlorate and sodium bromate can crystallize spontaneously from aqueous solutions to give a mixture of pure levorotatory and pure dextrorotatory isotropic crystals. The crystallization of these salts can also be nucleated with traces of levo- or dextro- rotatory crystals to furnish new crystals with a high degree of chiroptical purity. Our varied efforts within the confines of these two related fields are summarized.     

Nanoconfinement of the Low-Temperature Dark Conglomerate: Structural Control from Focal Conics to Helical Nanofilaments

The helical nanofilament (HNF) and low-temperature dark conglomerate (DC) liquid-crystal (LC) phases of bent-core molecules show the same local layer structure but present different bulk morphologies. The DC phase is characterized by the formation of nanoscale toric focal conics, whereas the HNF phase is constructed of bundles of twisted layers. Although the local layer structure is similar in both phases, materials that form these phases tend to form one morphology in preference to the other. Targeted control of the nanostructures would provide pathways to potential applications and insight into how conditions drive a specific phase formation. Here, W624, a compound known to form the DC phase is confined in nanometer scale channels of porous anodized aluminum oxide (AAO) membranes. Within each nanochannel, the DC phase is suppressed forming the HNF structure instead, indicating the nanoscale spatial limitation can control the phase structure of the DC phase.     

Synthesis of helical polyacetylene in chiral nematic liquid crystals using crown ether type binaphthyl derivatives as chiral dopants

A series of crown ether type binaphthyl derivatives (CEBDs) were synthesized and used as chiral dopants to induce chiral nematic (N*) liquid crystals (LCs). The twisting powers of the CEBDs for phenylcyclohexane (PCH)-derived nematic LCs were evaluated. It was found that the twisting powers of the CEBDs increased with decreasing ring size of the crown ether. Helical polyacetylenes were synthesized in the N*-LCs induced by the CEBDs. The relationship between the morphology of the helical polyacetylene and the helical structure of the N*-LC was investigated. The result showed that the interdistance between the fibril bundles of the helical polyacetylene was equal to a half-helical pitch of the N*-LC and the screw direction of the polyacetylene fibrils was opposite to that of the N*-LC.     

Investigation of local density of monomer units and molecular dynamics in solutions of poly-4-vinyl-pyridine by the spin label technique

The local density of monomer units of the macromolecule (local density of the host molecule, ?_host) in poly-4-vinyl-pyridine solutions in ethanol was determined by the spin label technique. In dilute solutions, ?_host is considerably greater than the mean density of monomer units in the volume of the polymer coil; when the polymer concentration rises from 0.5 to 65 wt%, its increase does not exceed 30%. This indicates that the differences between polymer coil microstructure (mutual positions of monomer units close to a chosen unit) in dilute and concentrated solutions is small. The local density of monomer units of neighbouring macromolecules (guest macromolecules, ?_guest) is strongly dependent on the polymer concentration in solution. In dilute solutions, ?_host ? ?_guest; for polymer concentrations above 2–3 wt%, overlapping and interpenetration of macromolecular coils take place, local density of monomer units of neighbouring macromolecules rises and monotonously increases as polymer concentration grows. The concentration dependence of the local rotational and translational mobility of monomer units is determined by the local density of monomer units of the neighbouring macromolecules.     

Modeling of Hierarchical Morphology of Carbon Nanotube Bundles in Polymer Composites

The morphological features of carbon nanotube (CNT) polymer composites and their influence on the effective modulus are evaluated. The considered features include bundle formation from the helical sub‐bundles made of individual CNTs. The formation of bundles is considered as a result of agglomeration of individual nanotubes above and below onset of percolation and is related to electrical conductivity. The proposed geometrical model yields a bundle diameter that agrees closely with that of the experimentally measured by voltage‐contrast method and scanning electron microscopy analysis of polyimide nanocomposites. The proposed micromechanical analytical model includes the helical structure of a bundle and provides close agreement of the effective Young's modulus of nanocomposite over a wide range of CNT content. It is shown that considering the helical structure of CNT bundles and its effect on bundle modulus is vital for predicting the effective modulus of CNT‐polymer nanocomposite.

     

The effect of a low-molecular-mass salt on stoichiometric polyelectrolyte complexes composed of oppositely charged macromolecules with different solvent affinities

The effect of a low-molecular-mass salt on the thermodynamic stability of stoichiometric interpolymer complexes composed of oppositely charged macromolecules with different solvent affinities has been theoretically studied. It has been shown that the dissociation of such complexes with an increase in the concentration of the salt proceeds via several stages. At a low concentration of the salt, complexes retain their structure and dimensions. When a certain critical concentration of the salt n _s^cr is achieved, the dimensions of the complex increase abruptly. At this concentration, macromolecules involved in the complex begin to separate, and at concentration n _s^*, they fully move apart but remain soluble owing to the polyelectrolyte effect. Upon a further increase in the concentration of the salt, the polyelectrolyte effect is shielded and the dimensions of macromolecules decrease. The critical concentration of the low-molecular-mass salt, n _s^cr, increases with an increase in the degree of ionization of macromolecules and a decrease in the affinity of the hydrophilic component for water and diminishes with the degree of polymerization of macromolecules and the degree of hydrophobicity of a polycation. Because of the easy formation of soluble complexes from oppositely charged macromolecules differing in solvent affinities and their high stability in solutions of a low-molecularmass salt, such complexes are promising for wide use in medicine and pharmaceutical practice.     

Assembly of alpha-helical peptide coatings on hydrophobic surfaces

The adsorption or covalent attachment of biological macromolecules onto polymer materials to improve their biocompatibility has been pursued using a variety of approaches, but key to understanding their efficacy is the verification of the structure and dynamics of the immobilized biomolecules. Here we present data on peptides designed to adsorb from aqueous solutions onto highly porous hydrophobic surfaces with specific helical secondary structures. Small linear peptides composed of alternating leucine and lysine residues were synthesized, and their adsorption onto porous polystyrene surfaces was studied using a combination of solid-state NMR techniques. Using conventional solid-state NMR experiments and newly developed double-quantum techniques, their helical structure was verified. Large-amplitude dynamics on the NMR time scale were not observed, suggesting irreversible adsorption of the peptides. Their association, adsorption, and structure were examined as a function of helix length and sequence periodicity, and it was found that, at higher solution concentrations, peptides as short as seven amino acids adsorb with defined secondary structures. Two-dimensional double-quantum experiments using (13)C-enriched peptide sequences allow high-resolution determination of secondary structure in heterogeneous environments where the peptides are a minor component of the material. These results shed light on how polymeric surfaces may be surface-modified by structured peptides and demonstrate the level of molecular structural and dynamic information solid-state NMR can provide.     

Synthesis and lyotropic liquid crystal properties of chiral helical polycarbodiimides

Chiral helical polymers have been expected to exhibit optical activity with a significantly large optical rotation power. In this paper polymethylphenylethylcarbodiimides (Poly-PhEMCDI) with helical structure were synthesized by the insertion polymerization of a corresponding chiral monomeric carbodiimide initiated by a copper complex. The circular dichroism spectra and optical rotation power induced by the ordered rigid main chain helical structure of polycarbodiimides, in solution and as cast films, were studied. Polycarbodiimides have a rigid rod helical structure and form lyotropic liquid crystal (LLC) in organic solvents such as dichloromethane (DCM), chloroform and THF. The LLC phase was studied using polarizing optical microscopy and X-ray diffraction. A chiral nematic phase was formed in DCM and chloroform in the concentration range 20–36%. Spherulites were formed in more concentrated solution. The formation of a LLC phase in polycarbodiimides organic solutions makes it possible to align the polymer helical chain to form an ordered film for electro-optical applications.     

Synthesis and lyotropic liquid crystal properties of chiral helical polycarbodiimides

Chiral helical polymers have been expected to exhibit optical activity with a significantly large optical rotation power. In this paper polymethylphenylethylcarbodiimides (Poly-PhEMCDI) with helical structure were synthesized by the insertion polymerization of a corresponding chiral monomeric carbodiimide initiated by a copper complex. The circular dichroism spectra and optical rotation power induced by the ordered rigid main chain helical structure of polycarbodiimides, in solution and as cast films, were studied. Polycarbodiimides have a rigid rod helical structure and form lyotropic liquid crystal (LLC) in organic solvents such as dichloromethane (DCM), chloroform and THF. The LLC phase was studied using polarizing optical microscopy and X-ray diffraction. A chiral nematic phase was formed in DCM and chloroform in the concentration range 20-36%. Spherulites were formed in more concentrated solution. The formation of a LLC phase in polycarbodiimides organic solutions makes it possible to align the polymer helical chain to form an ordered film for electro-optical applications.     

Biomimetic Transmembrane Channels with High Stability and Transporting Efficiency from Helically Folded Macromolecules

Membrane channels span the cellular lipid bilayers to transport ions and molecules into cells with sophisticated properties including high efficiency and selectivity. It is of particular biological importance in developing biomimetic transmembrane channels with unique functions by means of chemically synthetic strategies. An artificial unimolecular transmembrane channel using pore‐containing helical macromolecules is reported. The self‐folding, shape‐persistent, pore‐containing helical macromolecules are able to span the lipid bilayer, and thus result in extraordinary channel stability and high transporting efficiency for protons and cations. The lifetime of this artificial unimolecular channel in the lipid bilayer membrane is impressively long, rivaling those of natural protein channels. Natural channel mimics designed by helically folded polymeric scaffolds will display robust and versatile transport‐related properties at single‐molecule level.     

可溶解的聚氨酯脲微凝胶的合成及其分子尺寸的测定

以聚氧化四亚甲基二醇、4,4′ 二苯甲烷二异氰酸酯和己二胺为原料 ,利用高分子在溶液中基本形态是无规线团的特征 ,设计了一个含有分子内和分子间反应的交联聚合体系 ,由于分子内反应与分子间反应是一对竞争反应 ,使得交联过程得以控制 ,在溶液聚合体系中合成了可溶解的微凝胶 .在分子尺寸测定过程中 ,发现了这种高分子在溶液中非常容易形成分子簇 ,且分子簇的形成与解离处于不平衡之中 ,这可能是交联高分子的一种特殊的溶液行为     

A shape-persistent polymeric crystallization template for CaCO3

Alanyl-alanine-derived poly(isocyanide)s possess a helical structure that persists even in aqueous media. These rigid macromolecules possess a regular distribution of carboxylic acid-terminated side chains which for the first time allows the study of the templating process involved in biomineralization using a shape-persistent polymeric template. It is demonstrated that in the case where the polymer derived from l-Ala-d-Ala is used the formation of apple core-type calcite crystals is controlled both by nucleation of the (01.1) face and subsequent adsorption of the polymer to the {hk.0} faces of the growing crystal. A small change in the secondary structure of the template that is introduced by using the polymer derived from l-Ala-l-Ala is directly reflected in the lower degree of control over the crystallization process.     

Study of the Topological Structure of Bamboo <Emphasis Type="Italic">Bambusa</Emphasis> sp. Lignin Macromolecules

The topological structure of macromolecules of Pepper lignin isolated from bamboo stems is studied. The molecular properties of dilute lignin solutions in dimethylformamide are investigated by the methods of high-velocity sedimentation, translational diffusion, and viscometry. The molecular mass of fractions, the scaling coefficients of the Kuhn–Mark–Houwink equation, and the Tsvetkov–Klenin hydrodynamic invariant are determined. It is first shown that the lignin of bamboo stems belongs to the universal class of chaotically branched polymers, and the degree of branching of macromolecules is estimated.