An ethanol‐solvated centrosymmetric dimer of bismuth(III) and thiosaccharinate resulting from `semicoordination' contacts

In the title compound, bis(μ‐1,1‐dioxo‐1,2‐benzothiazole‐3‐thiolato)‐κ³N,S:S;κ³S:N,S‐bis[(1,1‐dioxo‐1,2‐benzothiazole‐3‐thiolato‐κ²N,S)(ethanol‐κO)bismuth(III)] ethanol hemisolvate, [Bi₂(C₇H₄NO₂S₂)₆(C₂H₅OH)₂]·0.5C₂H₅OH, three independent thiosaccharinate (tsac) anions chelate the metal centre through the endocyclic N and exocyclic S atoms. The complex also presnts two `semicoordination' contacts, one from a pendant ethanol solvent molecule and a second one from an S atom of a centrosymmetrically related molecule. This latter interaction complements two π–π interactions between tsac rings to form a dimeric entity which is the elemental unit that builds up the crystal structure. These dinuclear units are connected to each other via a second type of π–π interaction, generating chains along [11]. Two ethanol molecules, one of them of full occupancy at a general position and semicoordinated to the central cation, and a second one depleted and disordered around a symmetry centre, stabilize the structure. The complex was studied theoretically and the vibrational assignations were confirmed by employing theoretical density functional theory (DFT) methods.     

噻吩衍生物电子结构的DFT研究

采用B3LYP方法在6-31G^*水平上优化了12种α位取代噻吩衍生物的几何构型，采用TD-DFT方法计算了它们的前线轨道能级和电子光谱．结果表明，a，f和1分子比它们的同分异构体要稳定；噻吩衍生物与苯、吡啶相比，也具有很好的共轭性；随着分子中所连接基团数目的增多，特别是-CN的增加，分子的偶极距增大，前线轨道能级差减小，分子的最大吸收波长发生红移；对于具有相同共轭链的同分异构体，c，g，k分子的偶极距较大，而前线轨道能级差最小的分别为b，e，1分子，相应的最大吸收波长也较大．这些结论对分子设计具有重要的指导意义．     

Control of a photoswitching chelator by metal ions: DFT,NBO, and QTAIM analysis

Ability of aroylhydrazones to change conformation upon interaction with light makes them promising candidates for molecular switches. Isomerization can be controlled through complexation with selected metal ions which bind with different affinity. N′‐[1‐(2‐hydroxyphenyl)ethyliden]iso‐nicotinoylhydrazide (HAPI) is an example of a dual‐wavelenght photoswitching molecule, whose complexation with metal ions was recently experimentally investigated (Franks et al. J. Inorg. Chem. 2014, 53, 1397). In this contribution, complexes between HAPI and K⁺, Ca²⁺, Mn²⁺, Fe²⁺, Fe³⁺, Cu⁺, Cu²⁺, and Zn²⁺ ions were investigated using Density Functional Theory, Natural Bond Order analysis, and Quantum Theory of Atoms in Molecules. The most important parameters that determine complex stability are found to be ion radius and charge transferred from ligands to the ion: smaller ion radii and larger CT values characterize formation of more stable complexes. Our results explain experimentally observed effect of different metal ions on photoisomerization through determination of metal ion affinity (MIA): photoisomerization is inhibited if MIA exceeds 100 kcal/mol; for MIA between 50 and 100 kcal/mol excess of metal ions prevents isomerization, whereas in case of MIA below 50 kcal/mol metal ions have no influence on light–HAPI interaction. © 2015 Wiley Periodicals, Inc.     

Molecular structure, vibrational spectra and nonlinear optical properties of l-Valine Hydrobromide: DFT study

FT-IR and Raman spectra of the nonlinear optical material l-Valine Hydrobromide crystal have been recorded and analyzed. The equilibrium geometry, bonding features and the harmonic vibrational wavenumbers of LVB have been calculated with the help of density functional theory (DFT) calculation. The lowering of NH stretching wavenumber indicates the formation of NH?Br hydrogen bonding. The calculated First order hyperpolarizability value shows that LVB is the potential candidate for the NLO applications. The electronic effects and the hydrogen bonding were explained using natural bond orbital analysis.     

A DFT study on the electronic structure for iridium nitride under high pressure

We present density functionary theory (DFT) calculations on the structural parameters and electronic structure for iridium nitride by using the generalized gradient approximation (GGA) and the Perdew–Burke–Ernserhof (PBE) exchange-correlation functional. The lattice parameters and bulk modulus (B ₀) for the ground state are obtained, and the energy band structure and electron densities of states (DOS) of IrN₂ are presented. It is found that IrN₂ has a very close indirect energy gap. There is a strong covalent bond between the two nearest N atoms. This gives rise to a very high elastic modulus of IrN₂ and reveals the quasimolecular nature of the N₂ in IrN₂ crystal. Lattice parameters, bulk modulus, and the electronic structure of IrN₂ under high pressure have also been investigated based on DFT. The compressibility along three cell vectors is very close to each other. The band gap increases a little with the pressure even when the pressure is up to 100 Gpa.     

Synthesis,Anticancer, Antioxidant,Anti-Inflammatory,Antimicrobial Activities,Molecular Docking,and DFT Studies of Sultams Derived from Saccharin

A series of N-substituted saccharins namely 2-(1,1-dioxido-3-oxobenzo[d]isothiazol-2(3H)-yl) acetonitrile (2) and (alkyl 1,1-dioxido-3-oxobenzo[d]isothiazol-2(3H)-yl) acetate (3a–g) were synthesized, in moderate to excellent yields, from commercially available starting materials by two different approaches and their chemical structures were characterized by spectroscopic techniques (¹H-NMR, ¹³C-NMR, IR, and MS). All the synthesized compounds were evaluated for their anti-inflammatory toward IL-6 and TNF-α, antioxidant, as well as their anticancer activities against hepatic cancer cells. In addition, their anti-fungal and antibacterial activities against both Gram-positive and Gram-negative bacteria were tested. All the tested compounds have exhibited excellent (3a, d, e) to moderate anti-inflammatory activity. Additionally, esters (3b, f) and nitrile (2) showed excellent antioxidant activity. Furthermore, ester 3f, with isopropyl ester, exhibited the highest cytotoxic activity compared to the other esters. Moreover, all compounds were evaluated as selective inhibitors of the human COX-1 enzyme using molecular docking by calculating the free energy of binding, inhibition constant, and other parameters to find out the binding affinity. The molecular study showed that esters (3d, f) and nitrile (2) revealed the highest binding affinities, hence enhancing the inhibition activity with the active site of the COX-1 enzyme. All the tested compounds have more negative Gibbs free, electrostatic, and total intermolecular energies than the standard inhibitor ASA. These results indicate that, all the tested sultams are potent anti-inflammatory drugs as compared to standard inhibitors. Finally, the chemical properties and the quantum factors of synthesized sultams were calculated based on density functional theory (DFT) to predict reactivity, and then correlated with the experimental data. Ester 3f showed the lowest ionization potential and lowest energy gap (E_gap = 7.5691 eV), which was correlated with its cytotoxic activity. Furthermore, the spatial electron distribution of HOMO, LUMO were computed and it clearly indicates the electron donation ability of all the tested compounds.     

A one-dimensional silver(I) coordination polymer with saccharin and pyrazine: synthesis,crystal structure,thermal analysis,FTIR spectra,and DFT studies

A silver(I) complex of saccharinate (sac) with pyrazine (pyz), [Ag(sac)(pyz)] _n , has been synthesized and characterized by elemental analysis, IR, thermal analysis, and single-crystal X-ray diffractometry. The complex crystallizes orthorhombic space group Pnma with unit cell parameters of a = 13.0073(9) Å, b = 6.4907(6) Å, c = 13.4007(9) Å, V = 1131.37(15) Å³, and Z = 4. [Ag(sac)(pyz)] _n is a one-dimensional coordination polymer, in which the sac ligand acts as a monodentate ligand through the N atom and the trigonal silver centers are linked by the bridging pyz ligands. The individual chains are connected into two-dimensional supramolemular network by aromatic π(sac)···π(pyz) stacking interactions. The FTIR spectrum of [Ag(sac)(pyz)] _n has been recorded in the region and 4,000–400 cm^?1. The optimized geometry, frequency, and intensity of the vibrational bands of [Ag(sac)(pyz)] _n were obtained by density functional theory (DFT) at the B3LYP level. The vibrational frequencies were calculated and the scaled values have been compared with the experimental FTIR data. The observed and calculated frequencies are found to be in good agreement.     

Investigation of inclusion complex of metformin into selective cyclic peptides as novel drug delivery system: Structure,electronic properties,AIM, and NBO study via DFT

In this study, the density functional theory computational method is used to investigate the encapsulation process of metformin into three types of the cyclic peptides composed of eight serine (CP1), eight glycine (CP2), and four serine‐glycine (CP3) cyclic peptides as a new model in the process of drug delivery in the gas phase. The obtained results using the B3LYP/6‐31++G (d,p) method indicate that the complexes formed are energetically favored. Furthermore, results reveal that the drug encapsulation process is typically chemisorption. The natural bonding orbital analysis shows that the intermolecular interaction of the C2 complex (metformin/CP2) is stronger than the C1 (Metformin/CP1) and C3 (Metformin/CP3) complexes due to greater total charge transfer energy, and the C1 complex is found to be the most favored complex. The theory of atoms in molecule (AIM) method is used to analyze the nature of interactions in different molecular systems. The results show the investigated cyclic peptides as effective carriers of metformin in the nanomedicine field.     

MP2, DFT and ab initio calculations on thioxanthone

Density functional theory (DFT), HF and MP2 calculations have been carried out to investigate thioxanthone molecule using the standard 6-31+G(d,p) basis set. The results of MP2 calculations show a butterfly structure for thioxanthone. The calculated results show that the predicted geometry can well reproduce the structural parameters. The predicted vibrational frequencies were assigned and compared with experimental IR spectra. A good harmony between theory and experiment is found. The theoretical electronic absorption spectra have been calculated using CIS method. ¹³C and ¹H NMR of the title compound have been calculated by means of B3LYP density functional method with 6-31+G(d,p) basis set. The comparison of the experimental and the theoretical results indicate that density functional B3LYP method is able to provide satisfactory results for predicting NMR properties.     

A highly distorted hexacoordinated silver(I) complex: synthesis,crystal structure,and DFT studies

A new highly distorted hexacoordinated silver(I) complex [AgL₂NO₃] with 2-(bis(methylthio)methylene)-1-phenylbutane-1,3-dione (L) as ligand is synthesized and characterized using elemental analysis, FTIR, NMR, and X-ray single-crystal structure analysis. The ligand (L) and the nitrate group act as bidentate ligands. The geometry around the silver ion has an intermediate configuration between a trigonal prism (TP) and an octahedron (OCT). Continuous shape measure (CShM) analysis indicated a closer configuration to TP than OCT. Experimentally and theoretically, the Ag–S bonds are shorter than any of the Ag–O bonds, indicating a stronger interaction between Ag⁺ (soft metal) and S-atom as a softer site than oxygen. Natural bond orbital (NBO) analyses showed higher interaction energies between the S-atom lone pairs and the Ag–antibonding NBO (8.61–31.39 kcal/mol) than LP(O)→Ag (3.48–11.46 kcal/mol). The acceptor antibonding NBO of the Ag atom has mainly s-orbital character. The Ag atom has a natural charge of +0.7579 e at the experimental structure, suggesting that negative charge was transferred from the ligand (0.0666 e) and nitrate (0.1090 e) to the Ag ion. Using Hirshfeld surface analysis, the important intermolecular interactions between molecular units within the crystal lattice of the ligand and its Ag-complex were analyzed and compared.     

Synthesis, spectroscopic characterization, X-ray structure and DFT calculations of [ReOCl2(8-Sqn)(OPPh3)]

The reaction of [ReOCl₃(PPh₃)₂] with 8-quinolinethiol (8-HSqn) has been examined, and the [ReOCl₂(8-Sqn)(OPPh₃)] complex has been obtained. It was characterized by IR, UV–Vis spectroscopy and single crystal X-ray analysis. The nature of the frontier orbitals and the electronic transitions involved in the absorption spectrum have been studied by means of the density functional and time-dependent density functional methods.     

给、吸电子基团对芳香共轭体系电子结构影响的密度泛函理论研究

采用密度泛函理论,在B3LYP／6—31G^＊方法水平上对8个连接有给、吸电子基团的芳香共轭体系的稳定性、偶极矩、静电荷分布和前线轨道能级进行了研究,并采用TD／DFT方法进一步研究了它们的电子光谱．结果表明a-1,b-1,c-1和d-2分子比它们的同分异构体要稳定;对于苯、呋喃、吡咯与乙烯形成的共轭体系,吸电子基团连接在乙烯一端,给电子基团连接在芳香环上使体系的偶极距增强,而吡啶则相反;前线轨道能级差较小的是吸电子基团连接在芳香环一端的体系,相应的分子最大吸收波长也较大．     

Synthesis,thermodynamic, photophysical and DFT studies of some trivalent metal chelates of a hexadentate tripodal hydroxyquinolinate-based ligand

The synthesis, complexation, evaluation of solution thermodynamics and photophysical properties of multidentate chelator 5-[[3-[(8-hydroxy-5-quinolyl)methoxy]-2-[(8-hydroxy-5-quinolyl)methoxy methyl]-2-methylpropoxy]methyl]quinolin-8-ol (TMOM5OX) with trivalent Fe, Al and Cr ions is described. The corresponding complexes were probed by elemental analysis, mass, infrared, absorption and emission spectroscopy, potentiometry, and theoretical (DFT) studies. The thermodynamically stable and soluble M³⁺ complexes show stability constants in the range log β₁₁₀ = 23–30 and pM in the range of 19–30. The ligand forms distorted octahedral complexes in a tripodal orchestration and firmly binds metal ion over wide pH range. Density functional theory with B3LYP functional and 6-311G* basis set was employed for optimization, vibrational modes, NBO analysis, excitation and emission properties of the protonated, neutral, deprotonated states of the ligand and its ferric complex. The photophysical properties of TMOM5OX obtained by TD-DFT calculations showed good agreement with the experimental data. The result of NBOs and frontier molecular orbital analysis of ground and excited states of the metal complexes of TMOM5OX were used to explain the nature of the metal center.     

X-ray absorption spectroscopy study of the electronic structure and local coordination of 1st row transition metal-promoted Chevrel-phase sulfides

Abstract

The electronic structures of S and Mo as well as the local coordination of Mo are investigated as a function of metal promotion Chevrel-phase (CP) sulfides. We observe the effect of metal promoter-induced electron donation into the stoichiometric range M_xMo₆S₈ (M?=?Fe, Ni, Cu; x?=?0–2) through analysis of X-ray absorption near-edge structure regions. We further observe the effect of this promotion on the bonding environment of Mo₆ metal centers through extended X-ray absorption fine structure analysis. We monitor expansion and contraction of Mo₆ octahedra with and without metal promotion, as has been predicted by Hückel molecular orbital theory. We further observe a marked tunability in the electronic structure of sulfur upon charge transfer between promoting species and Mo₆S₈ units. Average Mo₆ octahedron Mo–Mo bond contraction from 2.76 Å to as short as 2.69 Å was observed upon incorporation of metal promoters, while intercluster separation displays a pronounced increase for promoter-host lattices compared to un-promoted Mo₆S₈. To corroborate spectroscopically observed phenomena, we performed computational analyses of spin-polarized densities of state for the CP materials investigated herein, where a detectable increase in sulfur-based frontier orbital population is observed in accordance with experimentally validated orbital filling.     

Electronic structure and coordination chemistry of phenanthridine ligand in first‐row transition metal complexes: A DFT study

The geometric parameters, electronic structures, and haptotropic migration of a series of hypothetical compounds of general formula CpM(C₁₃H₉N) and (CO)₃M(C₁₃H₉N) (M = fist row transition metal, Cp = C₅H₅, and C₁₃H₉N = phenanthridine ligand) are investigated by means of the density functional theory. The phenanthridine ligand can bind to the metal through η¹ to η⁶ coordination mode, in agreement with the electron count and the nature of the metal, showing its capability to adapt itself to the electronic demand of the metal as well as to the polycyclic aromatic hydrocarbons. In the investigated species, the most favored closed‐shell count is 18‐electron except for the Ti and V models which are deficient open‐shell 16‐electron configuration. This study has shown the difference in coordination ability of this heteropolycyclic ligand: the coordination of the central C₅N ring is less favored than the terminal C₆ rings, in agreement with the π‐electron density localization. Most of the investigated complexes are expected to exhibit a rich fluxional behavior. This flexibility favors the possibility for the existence of several isomers as well as their interconversion through haptotropic shifts. © 2012 Wiley Periodicals, Inc.     

Minor groove site coordination of adenine by platinum group metal ions: effects on basicity,base pairing,and electronic structure

Dithioether- or diamine-tethered adenine derivatives react with Pt(II), Pd(II), and Rh(III) ions to give N3-coordinated complexes of the types [MCl(SSN)](+) (M = Pt or Pd), [RhCl(3)(SSN)], or [RhCl(3)(NNN)] (where SSN = 1-(N9-adenine)-3,6-dithia-heptane or 1-(N9-adenine)-4,7-dithia-octane; NNN = ethylenediamine-N,9-ethyladenine). Single-crystal X-ray analysis confirms the nature of the metal-nucleobase interaction and highlights a conserved intermolecular hydrogen-bonding motif for all the complexes, irrespective of the metal-ion geometry. Coordination significantly reduces the basicity of the adeninyl group, as indicated by a pK(a) value of -0.16 for [PtCl(N3-1-(N9-adenine)-3,6-dithia-heptane)]BF(4), compared to a pK(a) value of 4.2 for 9-ethyladenine. The site of proton binding, N1 or N7, could not be unambiguously assigned from the (1)H NMR data, because of the similar effect on the chemical shifts of the H2 and H8 protons. Density functional calculations at the BP-LACVP level suggest N1 as the site of protonation for this type of complex. This is in contrast to the N7-protonation reported for [Pt(dien)(N3-6,6',9-trimethyladenine)](2+), as reported elsewhere (Meiser et al., Chem.-Eur. J. 1997, 3, 388). However, further electronic structure calculations in the gas phase reveal that the preferred site for protonation for N3-bound complexes is conformationally dependent. N3 coordination was also found to reduce the extent of base pairing between adenine and thymine in dimethylsulfoxide for the self-complementary complex [PtCl(L3)](+) (L3 = 1-(N9-adenine)-3,6-dithia-9-(N1-thymine)nonane), compared to that for the uncomplexed ligand.     

Donor acceptor groups effect,polar protic solvents influence on electronic properties and reactivity of 2-Chloropyridine-4-carboxylic acid

The computational reckoning of 2-Chloropyridine-4-carboxylic acid (2CP4CA) was accomplished employing DFT/B3LYP with the root set as 6–311++G(d, p). The impact of polar protic solvents which are eco-friendly solvents (water, methanol, ethanol, 1-propanol) on 2CP4CA were analysed. To examine the solvent effect, vibrational investigations and NLO reports of 2CP4CA in dissimilar solvents were executed. Geometrical properties were also established in gas phase for 2CP4CA. Exercising VEDA program, the entire vibrational assignment was accomplished. Donor-acceptor exchanges were ascertained utilizing NBO scrutiny technique. Thermodynamic properties of 2CP4CA were analysed at different temperatures. By applying TD - DFT approach, theoretic UV–Vis absorption spectrum was procured in different solvents. In order to evaluate the complete electron concentration and sensitive spots of 2CP4CA, MEP coupled with FMO analyses were employed. HOMO along with LUMO orbitals and energy band gap were acquired for 2CP4CA employing dissimilar polar protic solvents. Additionally, ELF, LOL and charge transfer studies were also executed. RDG analysis has been exercised for revealing non-covalent interactions.