1,3(R):4,6(R)‐Di‐O‐benzyl­idene‐d‐mannitol

The title compound, C₂₀H₂₂O₆, has crystallographic twofold symmetry. The central six‐C‐atom chain has an extended conformation similar to that of d ‐mannitol, with two independent C—C—C—C torsion angles of 165.69 (14) and 177.60 (12)°. The 1,3‐dioxane ring has a chair conformation. All chiral centers have the R configuration.     

Substituent position effect on the crystal structures of N‐phenyl‐2‐phthalimidoethanesulfonamide derivatives

In order to determine the impact of different substituents and their positions on intermolecular interactions and ultimately on the crystal packing, unsubstituted N‐phenyl‐2‐phthalimidoethanesulfonamide, C₁₆H₁₄N₂O₄S, (I), and the N‐(4‐nitrophenyl)‐, C₁₆H₁₃N₃O₆S, (II), N‐(4‐methoxyphenyl)‐, C₁₆H₁₆N₃O₆S, (III), and N‐(2‐ethylphenyl)‐, as the monohydrate, C₁₈H₁₈N₂O₄S·H₂O, (IV), derivatives have been characterized by single‐crystal X‐ray crystallography. Sulfonamides (I) and (II) have triclinic crystal systems, while (III) and (IV) are monoclinic. Although the molecules differ from each other only with respect to small substituents and their positions, they crystallized in different space groups as a result of differing intra‐ and intermolecular hydrogen‐bond interactions. The structures of (I), (II) and (III) are stabilized by intermolecular N—H…O and C—H…O hydrogen bonds, while that of (IV) is stabilized by intermolecular O—H…O and C—H…O hydrogen bonds. All four structures are of interest with respect to their biological activities and have been studied as part of a program to develop anticonvulsant drugs for the treatment of epilepsy.     

Three 1,2,4‐triazole derivatives containing subtituted benzyl and benzyl­amino groups

The title compounds, 4‐benzyl­amino‐3‐(4‐methyl­benzyl)‐1H‐1,2,4‐triazol‐5(4H)‐one, C₁₇H₁₈N₄O, (I), 3‐(4‐methyl­benzyl)‐4‐(4‐methyl­benzyl­amino)‐1H‐1,2,4‐tri­azol‐5(4H)‐one, C₁₈H₂₀N₄O, (II), and 3‐(4‐chloro­benzyl)‐4‐(4‐methyl­benzyl­amino)‐1H‐1,2,4‐triazol‐5(4H)‐one, C₁₇H₁₇ClN₄O, (III), were obtained from the corresponding Schiff base in the presence of diglyme and NaBH₄. Each compound contains a 1,2,4‐triazole ring and two benzene rings, which are essentially planar. The molecules are linked by a combination of intermolecular N—H⋯O and N—H⋯N hydrogen bonds. Additionally, there is a weak π–π stacking interaction in (I), involving the benzene ring of the amino­benzyl group and the partially aromatic 1,2,4‐triazole moiety, with a centroid–centroid distance of 3.7397 (10) Å.     

Comparative study on the enzymatic polymerization of N‐substituted aniline derivatives

A series of water‐soluble N‐substituted poly(alkylanilines) (PNAAs) have been enzymatically synthesized with a variety of groups, from methyl to n‐butyl, such as poly(N‐methylaniline), poly(N‐ethylaniline), poly(N‐butylaniline) and poly(N‐phenylethanolamine). The syntheses were made in the presence of poly(4‐sodium styrene sulfonate) (SPS) as a template and horseradish peroxidase (HRP) as a catalyst. The size and type of the groups have a great effect on the properties of the final polymers. UV‐vis spectroscopy and cyclic voltammetry measurements confirmed that for enzymatically synthesized PNAAs/SPS complexes, the electroactivity increased with the bulkiness of the substituents. These polymers have been studied in the doped and undoped states by FT‐IR and UV‐vis spectroscopy. Also these polymers show multiple and reversible optical transitions that can be ascribed to the formation of polaron and bipolaron states. Copyright © 2005 John Wiley & Sons, Ltd.     

The crystal and molecular structures of three germatrane derivatives

The molecular and crystal structure of three germatrane compounds: 1-(1-bromobicyclo[4.1.0]hept-7-yl)germatrane, l-(1-trimethylsilanyl-cyclopropyl)-germatrane and 1-(1-Methyl-1,2-dicarba-closo-dodecaboranyl)germatrane has been determined by X-ray diffraction method in order to investigate main geometrical regularities of the germatrane molecules. There were established all values of the main structural parameters above-mentioned molecules.     

The crystal and molecular structures of some germatrane derivatives

The crystal and molecular structures of seven germatrane derivatives have been determined from three-dimensional X-ray data in order to investigate the main geometrical regularities of the germatrane molecules.     

The effect of molecular broadening on liquid crystal behaviour in oligoaryl mesogens

The synthesis and phase behaviour of a series of broadened oligoaryls, in which replacement of one or two of the phenyl groups of bi- and ter-phenyl mesogens has been made by 1,4-substituted naphthalene, is reported. The novel materials, which are not mesogenic, can be compared with the liquid crystalline 2,6-substituted isomers.     

Exploiting space‐group symmetry in fragment‐based molecular crystal calculations

Recent developments in fragment‐based methods make it increasingly feasible to use high‐level ab initio electronic structure techniques to molecular crystals. Such studies remain computationally demanding, however. Here, we describe a straightforward algorithm for exploiting space‐group symmetry in fragment‐based methods which often provides computational speed‐ups of several fold or more. This algorithm does not require a priori specification of the space group or symmetry operators. Rather, the symmetrically equivalent fragments are identified automatically by aligning the individual fragments along their principle axes of inertia and testing for equivalence with other fragments. The symmetry operators relating equivalent fragments can then be worked out easily. Implementation of this algorithm for computing energies, nuclear gradients with respect to both atomic coordinates and lattice parameters, and the nuclear hessian is described. © 2014 Wiley Periodicals, Inc.     

The Molecular Structure of gauche‐1,3‐Butadiene: Experimental Establishment of Non‐planarity

The planarity of the second stable conformer of 1,3‐butadiene, the archetypal diene for the Diels–Alder reaction in which a planar conjugated diene and a dienophile combine to form a ring, is not established. The most recent high level calculations predicted the species to adopt a twisted, gauche structure owing to steric interactions between the inner terminal hydrogens rather than a planar, cis structure favored by the conjugation of the double bonds. The structure cis‐1,3‐butadiene is unambiguously confirmed experimentally to indeed be gauche with a substantial dihedral angle of 34°, in excellent agreement with theory. Observation of two tunneling components indicates that the molecule undergoes facile interconversion between two equivalent enantiomeric forms. Comparison of experimentally determined structures for gauche‐ and trans‐butadiene provides an opportunity to examine the effects of conjugation and steric interactions.     

The effect of intermolecular hydrogen bonding on the planarity of amides

Ab initio and density functional theory (DFT) calculations on some model systems are presented to assess the extent to which intermolecular hydrogen bonding can affect the planarity of amide groups. Formamide and urea are examined as archetypes of planar and non-planar amides, respectively. DFT optimisations suggest that appropriately disposed hydrogen-bond donor or acceptor molecules can induce non-planarity in formamide, with OCNH dihedral angles deviating by up to ca. 20° from planarity. Ab initio energy calculations demonstrate that the energy required to deform an amide molecule from the preferred geometry of the isolated molecule is more than compensated by the stabilisation due to hydrogen bonding. Similarly, the NH(2) group in urea can be made effectively planar by the presence of appropriately positioned hydrogen-bond acceptors, whereas hydrogen-bond donors increase the non-planarity of the NH(2) group. Small clusters (a dimer, two trimers and a pentamer) extracted from the crystal structure of urea indicate that the crystal field acts to force planarity of the urea molecule; however, the interaction with nearest neighbours alone is insufficient to induce the molecule to become completely planar, and longer-range effects are required. Finally, the potential for intermolecular hydrogen bonding to induce non-planarity in a model of a peptide is explored. Inter alia, the insights obtained in the present work on the extent to which the geometry of amide groups may be deformed under the influence of intermolecular hydrogen bonding provide structural guidelines that can assist the interpretation of the geometries of such groups in structure determination from powder X-ray diffraction data.     

Synthesis of new uracil non‐nucleoside derivatives as potential inhibitors of HIV‐1

6‐(2‐Phenylethyl) and 6‐cyclohexyl 5‐cyanouracils ( 1a,b ) were synthesized and reacted with chloromethyl ethyl ether, benzyl chloromethyl ether, chloromethyl methyl sulfide and (2‐acetoxyethoxy)methyl bromide. New uracil analogues of (S)‐DHPA were synthesized by reaction of compounds ( 1a,b ) with ((S)‐2,2‐dimethyl‐1,3‐dioxolane‐4‐yl) alkyl p‐toluenesulfonate.     

The salt–cocrystal spectrum in salicylic acid–adenine: the influence of crystal structure on proton‐transfer balance

At one extreme of the proton‐transfer spectrum in cocrystals, proton transfer is absent, whilst at the opposite extreme, in salts, the proton‐transfer process is complete. However, for acid–base pairs with a small ΔpK_a (pK_a of base ? pK_a of acid), prediction of the extent of proton transfer is not possible as there is a continuum between the salt and cocrystal ends. In this context, we attempt to illustrate that in these systems, in addition to ΔpK_a, the crystalline environment could change the extent of proton transfer. To this end, two compounds of salicylic acid (SaH) and adenine (Ad) have been prepared. Despite the same small ΔpK_a value (≈1.2), different ionization states are found. Both crystals, namely adeninium salicylate monohydrate, C₅H₆N₅⁺·C₇H₅O₃^?·H₂O, I , and adeninium salicylate–adenine–salicylic acid–water (1/2/1/2), C₅H₆N₅⁺·C₇H₅O₃^?·2C₅H₅N₅·C₇H₆O₃·2H₂O, II , have been characterized by single‐crystal X‐ray diffraction, IR spectroscopy and elemental analysis (C, H and N) techniques. In addition, the intermolecular hydrogen‐bonding interactions of compounds I and II have been investigated and quantified in detail on the basis of Hirshfeld surface analysis and fingerprint plots. Throughout the study, we use crystal engineering, which is based on modifications of the intermolecular interactions, thus offering a more comprehensive screening of the salt–cocrystal continuum in comparison with pure pK_a analysis.     

Solute–solvent interaction effects on second‐order rate constants of reaction between 1‐chloro‐2,4‐dinitrobenzene and aniline in alcohol–water mixtures

The second‐order rate coefficients for aromatic nucleophilic substitution reaction between 1‐chloro‐2,4‐dinitrobenzene and aniline have been measured in aqueous solutions of ethanol and methanol at 25°C. The plots of rate constants versus mole fraction of water show a maximum in all‐aqueous solutions. The effect of four empirical solvent parameters including hydrogen bond donor acidity (α) dipolarity/polarizability (π^*) normalized polarity (E^N_T) and solvophobicity (Sp) has been investigated. This investigation has been carried out by means of simple and multiple regression models. A dual‐parameter equation of log k₂ versus Sp and α was obtained in all‐aqueous solutions (n = 41, r = 0.962, s = 0.053, p = 0.0000). This equation shows that solvophobicity and hydrogen bond donor acidity are important factors in the occurrence of the reaction and they have opposite effects on reaction rate. © 2004 Wiley Periodicals, Inc. Int J Chem Kinet 37: 90–97, 2005     

2,3,4,5,6‐Penta­nitro­aniline 1,2‐dichloro­ethane disolvate: `push–pull' deformation of aromatic rings by intra­molecular charge transfer

The title compound, C₆H₂N₆O₁₀·2C₂H₄Cl₂, forms layered stacks of penta­nitro­aniline mol­ecules, which possess twofold symmetry. The voids between these stacks are occupied by dichloro­ethane mol­ecules, which reside near a 2/m symmetry element and display pseudo‐inversion symmetry. The C atoms in one of the two solvent mol­ecules are threefold disordered. In the penta­nitro­aniline mol­ecule, considerable distortion of the benzenoid ring, coupled with the short C—N(H₂) bond and out‐of‐plane NO₂ twistings, point to significant intra­molecular `push–pull' charge transfer at the amino‐ and nitro‐substituted (ortho and para) positions, as theoretically quantified by natural bond orbital analysis of the π‐electron density.     

Influence of molecular weight on the short‐channel effect in polymer‐based field‐effect transistors

In this study, we demonstrate how the intrinsic properties of a polymer can influence the electrical characteristics of organic field‐effect transistors (OFETs). OFETs fabricated with three batches of poly[2‐methoxy,5‐(3′,7′‐dimethyl‐octyloxy)]‐p‐phenylene vinylene (MDMO‐PPV) were investigated. The properties of the polymers were initially investigated using Fourier transform infrared spectroscopy (FTIR), impedance spectroscopy (IS), gel permeation chromotography (GPC), and cyclic voltammetry (CV), respectively. The structure and purity of the polymer batches were found to be very comparable, but the molecular weight (M_n and M_w) and polydispersity (PDI = M_w/M_n), varied between the samples and the HOMO and LUMO levels of the polymers were found to depend on the molecular weight properties. OFETs were then fabricated with the polymers and electrically characterized. It was observed that the channel current and the field‐effect mobility increase with increasing polymer molecular weight. The output characteristics of the transistors, on the other hand, were found to depend on the PDI of the polymer. Saturation of the channel current occurs at higher source–drain voltages and short‐channel behavior was observed to start at longer channel lengths for polymers with a higher PDI. This behavior is observed to be thickness dependent, and the short‐channel behavior was more pronounced for thicker MDMO‐PPV films. These results are explained in terms of influences of chain packing and ordering and high bulk currents on the FET output and transistor parameters. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 50: 117–124, 2012     

Synthesis and crystal structure of 5‐pyrazol‐4,5‐dihydropyrazoles derivatives

A series of 1‐acetyl(or phenyl)‐3‐aryl‐5‐(1‐phenyl‐3‐methyl‐5‐aryloxyl‐pyrazol)‐4,5‐dihydropyrazole derivatives have been efficiently synthesized under refluxing in glacial acetic acid with two kinds of hydrazines and five kinds of chalcones of 1‐phenyl‐methyl‐5‐phenoxyl‐pyrazol‐4‐aldehyde. The structures were confirmed on the basis of ¹H NMR, IR, MS and element analysis, and the crystal structure of the compound 4c was determined by single crystal X‐ray diffraction. The compound 4c belongs to monoclinic system with space group P2(1)/n, a = 11.8779(3) nm, b = 12.0901(2) nm, c = 17.7004(4) nm, α = 90°, β = 100.05(10)°, γ = 90°, Formula weight: 549.46, Triclinic V = 2502.89(9) nm³, D_c = 1.458 Mg/m³, Z = 4, F (000) = 1128.     

Dimorphism in (2Z)‐2‐benzyl­idene‐N,7‐dimethyl‐3‐oxo‐5‐phenyl‐2,3‐dihydro‐5H‐1,3‐thia­zolo[3,2‐a]pyrimidine‐6‐carboxamide

The title compound, C₂₂H₁₉N₃O₂S, crystallizes in two polymorphic forms having the same space group, viz. P, with Z′ = 2 and Z′ = 1. In both polymorphs, the planar thia­zole ring is fused cis with the dihydro­pyrimidine ring, the carbamoyl group is in an extended conformation with an anti­clinal orientation with respect to the pyrimidine ring, and the phenyl ring is attached to the pyrimidine ring approximately at a right angle. The two polymorphs have different inter­planar angles between the phenyl and thia­zole rings. The mol­ecules are linked by N—H⋯O and C—H⋯O hydrogen bonds.     

The crystal–crystal transition in hydrogenated ring‐opened polynorbornenes: Tacticity,crystal thickening,and alignment

At a temperature T_cc well below its melting point T_m, hydrogenated ring‐opened polynorbornene (hPN) is known to exhibit a crystal–crystal transition; above T_cc, the hPN chains are rotationally disordered. This transition is examined in a series of hPNs polymerized with different Mo‐ and Ru‐based catalysts, each of which imparts a slightly different tacticity to the polymer. T_cc is found to correlate well with the ratio of meso to racemo dyads (m:r); small changes in m:r (from 0.8 to 1.1) are sufficient to raise T_cc by nearly 20 °C. For the homogeneous Mo‐based “Schrock‐type” catalyst examined, such a change in m:r is easily achieved by simply adding the reversibly binding ligand trimethylphosphine during polymerization. T_cc approaches T_m with increasing m:r, indicating that r dyads stabilize the rotationally disordered structure. When heated above T_cc, hPN crystals thicken at a rate much greater than conventional three‐dimensionally ordered crystals, but below the rates shown by the two‐dimensional hexagonal (columnar) phase formed by some polymers, reflecting the intermediate level of order and chain mobility present in the high‐temperature hPN crystal phase. Solid‐state processing of hPN between T_cc and T_m yields highly aligned macroscopic specimens. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2010     

Investigation on Molecular Non-covalent Interaction in the Sodium Dodecyl Benzene SuIfonate-polychrome Blue B-protein Replacement Reaction

The molecular noncovalent interaction often originates from the electrostatic attraction and accords with the Langmuir isothermal adsorption. The sodium dodecyl benzene sulfonate (SDBS)‐polychrome blue B (PCB>protein bovine serum albumin (BSA), ovalbumin (OVA) and myoglobin (MB)] ternary reaction has been investigated at pH 3.88. Protein to replace PCB from the PCB‐SDBS binding product was used to characterize the assembly of an invisible‐spectral compound, SDBS, on proteins by measuring the variation of FCB light‐absorption by tbe micro‐surface adsorption‐spectral correction (MSASC) technique. The effect of ionic strength and temperature on the aggregation was studied. Results showed that the aggregates SDBS₉₂·BSA, SDBS₅₈·VA and SDBS₁₅·MB at 30 C and SDBS₈₃·BSA. SDBS₃₉·OVA and SDBS₁₀·MB at 50 °C are formed.