2‐Amino‐4,6‐bis(benzyloxy)‐5‐nitrosopyrimidine: chains built from three‐centre N—H⋯(N,O) and N—H⋯π(arene) hydrogen bonds

The molecules of the title compound, C₁₈H₁₆N₄O₃, exhibit a very polarized molecular–electronic structure. The mol­ecules are linked into chains by a combination of an asymmetric three‐centre N—H?(N,O) hydrogen bond [H?N 2.19, H?O 2.54, N?N 3.041 (4) and N?O 2.977 (4) Å, and N—H?N 168, N—H?O 112 and N?H?O 67°] and an N—H?π(arene) interaction [H?Cg 2.67 Å, N?Cg 3.496 (4) Å and N—H?Cg 163°; Cg is a benzyl ring centroid].     

Supramolecular architectures in CoII and CuII complexes with thiophene‐2‐carboxylate and 2‐amino‐4,6‐dimethoxypyrimidine ligands

The coordination chemistry of mixed‐ligand complexes continues to be an active area of research since these compounds have a wide range of applications. Many coordination polymers and metal–organic framworks are emerging as novel functional materials. Aminopyrimidine and its derivatives are flexible ligands with versatile binding and coordination modes which have been proven to be useful in the construction of organic–inorganic hybrid materials and coordination polymers. Thiophenecarboxylic acid, its derivatives and their complexes exhibit pharmacological properties. Cobalt(II) and copper(II) complexes of thiophenecarboxylate have many biological applications, for example, as antifungal and antitumor agents. Two new cobalt(II) and copper(II) complexes incorporating thiophene‐2‐carboxylate (2‐TPC) and 2‐amino‐4,6‐dimethoxypyrimidine (OMP) ligands have been synthesized and characterized by X‐ray diffraction studies, namely (2‐amino‐4,6‐dimethoxypyrimidine‐κN)aquachlorido(thiophene‐2‐carboxylato‐κO)cobalt(II) monohydrate, [Co(C₅H₃O₂S)Cl(C₆H₉N₃O₂)(H₂O)]·H₂O, (I), and catena‐poly[copper(II)‐tetrakis(μ‐thiophene‐2‐carboxylato‐κ²O:O′)‐copper(II)‐(μ‐2‐amino‐4,6‐dimethoxypyrimidine‐κ²N¹:N³)], [Cu₂(C₅H₃O₂S)₄(C₆H₉N₃O₂)]_n, (II). In (I), the Co^II ion has a distorted tetrahedral coordination environment involving one O atom from a monodentate 2‐TPC ligand, one N atom from an OMP ligand, one chloride ligand and one O atom of a water molecule. An additional water molecule is present in the asymmetric unit. The amino group of the coordinated OMP molecule and the coordinated carboxylate O atom of the 2‐TPC ligand form an interligand N—H…O hydrogen bond, generating an S(6) ring motif. The pyrimidine molecules also form a base pair [R₂²(8) motif] via a pair of N—H…N hydrogen bonds. These interactions, together with O—H…O and O—H…Cl hydrogen bonds and π–π stacking interactions, generate a three‐dimensional supramolecular architecture. The one‐dimensional coordination polymer (II) contains the classical paddle‐wheel [Cu₂(CH₃COO)₄(H₂O)₂] unit, where each carboxylate group of four 2‐TPC ligands bridges two square‐pyramidally coordinated Cu^II ions and the apically coordinated OMP ligands bridge the dinuclear copper units. Each dinuclear copper unit has a crystallographic inversion centre, whereas the bridging OMP ligand has crystallographic twofold symmetry. The one‐dimensional polymeric chains self‐assemble via N—H…O, π–π and C—H…π interactions, generating a three‐dimensional supramolecular architecture.     

2‐Amino‐4‐chloro‐6‐[N‐methyl‐N‐(4‐methylphenyl)amino]pyrimidine: formation versus fragmentation of hydrogen‐bonded chains of edge‐fused R22(8) rings in 4,6‐disubstituted 2‐aminopyrimidines

Molecules of the title compound, C₁₂H₁₃ClN₄, are linked by two independent N—H...N hydrogen bonds into a chain of edge‐fused R₂²(8) rings. The significance of this study lies in its attempt to rationalize the patterns of supramolecular aggregation in the title compound and in a range of analogous 4,6‐disubstituted 2‐aminopyrimidines.     

Synthesis of highly refractive polyimides derived from 3,6‐bis(4‐aminophenylenesulfanyl)pyridazine and 4,6‐bis(4‐aminophenylenesulfanyl)pyrimidine

A series of aromatic polyimides (PIs) containing pyridazine or pyrimidine in their main chains has been developed. All of the PIs were prepared from newly synthesized diamines, 3,6‐bis(4‐aminophenylenesulfanyl)pyridazine (APP), 4,6‐bis(4‐aminophenylenesulfanyl)pyrimidine (APPM) and aromatic dianhydrides, 4,4′‐[p‐thiobis(phenylenesulfanyl)]diphthalic anhydride (3SDEA) and 4,4′‐oxydiphthalic anhydride (ODPA) via the conventional two‐step polycondensation. The PIs showed good thermal stability with 10% weight loss at temperatures above 450 °C and glass transition temperatures above 190 °C. Films with a 10‐μm thickness exhibited good optical transparency above 80% at 500 nm, high refractive indices ranging from 1.7218 to 1.7499, and low birefringence between 0.0066 and 0.0102. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 4886–4984, 2009     

A three‐dimensional hydrogen‐bonded framework in 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one and a ribbon of fused hydrogen‐bonded rings in 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one

The molecular dimensions of both 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one, C₁₁H₁₂N₄O, (I), and 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one, C₁₁H₁₁N₅O₃, (II), are consistent with considerable polarization of the molecular–electronic structures. The molecules of (I) are linked into a three‐dimensional framework by a combination of one N—H...N hydrogen bond, two independent N—H...O hydrogen bonds and one C—H...π(arene) hydrogen bond. The molecules of (II) are linked into ribbons containing three types of edge‐fused ring by the combination of two independent three‐centre N—H...(O)₂ hydrogen bonds.     

Spectroscopic,DFT and antimicrobial activity of Zn(II), Zr(IV), Ce(IV) and U(VI) complexes of N,N‐ chelated 4,6‐bis (4‐chlorophenyl)‐2‐amino‐1,2‐dihydropyridine‐3‐carbinitrile

Four novel metal complexes of 4,6‐bis (4‐chlorophenyl)‐2‐amino‐1,2‐dihydropyridine‐3‐carbinitrile (H₂L) with Zn(II), Zr(IV), Ce(IV) and U(VI) were synthesized. The structure was elucidated using elemental analysis, melting point, molar conductivity; spectroscopic techniques (IR, ¹H NMR, UV–Vis., mass spectra) as well as thermo gravimetric analysis. The spectroscopic data proved that H₂L chelated with the metal ions as a bidentate ligand through N_amino and N_carbinitrile atoms. The molecular structure of the complexes was determined using density functional theory (DFT). The central metal ion in each complex is six‐coordinate and the angles around it vary from 62.74° to 166.46°; these values agree with distorted octahedral geometry. The calculated total energy of the complexes found in the region – 406.342 to ?459.717 au and the dipole moment change from 4.675 to 13.171D. The antibacterial and antifungal activities of the ligand, metal salts and complexes were estimated on some microorganisms. The complexes showed significant antibacterial profile in comparison to the free ligand.     

Hydro­gen‐bonding patterns in 2‐amino‐4,6‐di­methyl­pyrimidinium hydrogen sulfate

In the title compound, C₆H₁₀N₃⁺·HSO₄⁻, the asymmetric unit consists of a hydrogen sulfate anion and a 2‐amino‐4,6‐di­methyl­pyrimidinium cation. The hydrogen sulfate anions self‐assemble through O—H⋯O hydrogen bonds, forming supramolecular chains along the b axis, while the organic cations form base pairs via N—H⋯N hydrogen bonds. The amino­pyrimidinium cations join to the sulfate anions via a pair of hydrogen bonds donated from the pyrimidinium protonation site and from the exo amine group cis to the protonated site.     

Hydrogen‐bonded ribbons in ethyl (E)‐3‐[2‐amino‐4,6‐bis(dimethylamino)pyrimidin‐5‐yl]‐2‐cyanoacrylate and 2‐[(2‐amino‐4,6‐di‐1‐piperidylpyrimidin‐5‐yl)methylene]malononitrile

The pyrimidine rings in ethyl (E)‐3‐[2‐amino‐4,6‐bis(dimethylamino)pyrimidin‐5‐yl]‐2‐cyanoacrylate, C₁₄H₂₀N₆O₂, (I), and 2‐[(2‐amino‐4,6‐di‐1‐piperidylpyrimidin‐5‐yl)methylene]malononitrile, C₁₈H₂₃N₇, (II), which crystallizes with Z′ = 2 in the space group, are both nonplanar with boat conformations. The molecules of (I) are linked by a combination of N—H...N and N—H...O hydrogen bonds into chains of edge‐fused R₂²(8) and R₄⁴(20) rings, while the two independent molecules in (II) are linked by four N—H...N hydrogen bonds into chains of edge‐fused R₂²(8) and R₂²(20) rings. This study illustrates both the readiness with which highly‐substituted pyrimidine rings can be distorted from planarity and the significant differences between the supramolecular aggregation in two rather similar compounds.     

Di‐μ‐chloro‐bis({2‐[N,N‐bis(2‐aminoethyl)amino‐κ3N]ethylaminium}copper(II)) bis(naphthalene‐1,5‐disulfonate) pentahydrate

The title compound, [Cu₂(C₆H₁₉N₄)₂Cl₂](C₁₀H₆O₆S₂)₂·5H₂O, is comprised of discrete [Cu₂(tren)₂Cl₂]²⁺ dimers {tren is 2‐[N,N‐bis(2‐amino­ethyl)­amino]­ethyl­aminium} and naphthalene‐1,5‐di­sulfonate anions. Two Cl^? anions bridge two Cu^II ions, each of which is also coordinated by two of the primary and the tertiary amino N atoms of the tren ligand, giving each metal atom a distorted square‐pyramidal coordination geometry. The cation lies about an inversion centre and the asymmetric unit also has two independent anions lying about inversion centres.     

(1,3‐Dimethylimidazolidine‐2‐selone‐κSe)bis(1,10‐phenanthroline‐κ2N,N′)copper(II) bis(perchlorate) and bis(2,2′‐bipyridyl‐κ2N,N′)(imidazolidine‐2‐thione‐κS)copper(II) bis(perchlorate)

In the first title salt, [Cu(C₁₂H₈N₂)₂(C₅H₁₀N₂Se)](ClO₄)₂, the Cu^II centre occupies a distorted trigonal–bipyramidal environment defined by four N donors from two 1,10‐phenanthroline (phen) ligands and by the Se donor of a 1,3‐dimethylimidazolidine‐2‐selone ligand, with the equatorial plane defined by the Se and by two N donors from different phen ligands and the axial sites occupied by the two remaining N donors, one from each phen ligand. The Cu—N distances span the range 1.980 (10)–2.114 (11) Å and the Cu—Se distance is 2.491 (3) Å. Intermolecular π–π contacts between imidazolidine rings and the central rings of phen ligands generate chains of cations. In the second salt, [Cu(C₁₀H₈N₂)₂(C₃H₆N₂S)](ClO₄)₂, the Cu^II centre occupies a similar distorted trigonal–bipyramidal environment comprising four N donors from two 2,2′‐bipyridyl (bipy) ligands and an S donor from an imidazolidine‐2‐thione ligand. The equatorial plane is defined by the S donor and two N donors from different bipy ligands. The Cu—N distances span the range 1.984 (6)–2.069 (7) Å and the Cu—S distance is 2.366 (3) Å. Intermolecular π–π contacts between imidazolidine and pyridyl rings form chains of cations. A major difference between the two structures is due to the presence in the second complex of two N—H...O hydrogen bonds linking the imidazolidine N—H hydrogen‐bond donors to perchlorate O‐atom acceptors.     

A two‐dimensional layer in N,N′‐bis[2‐(hydroxymethyl)benzyl]ethylenediamine and a three‐dimensional network in N,N′‐bis[2‐(hydroxymethyl)benzyl]ethylenediammonium bis(perchlorate)

In both title compounds, C₁₈H₂₄N₂O₂, (Ia), and C₁₈H₂₆N₂O₂²⁺·2ClO₄⁻, (II), respectively, the two aryl rings are strictly parallel, with an inversion centre lying at the mid‐point of each central CH₂—CH₂ bond. Molecules in (Ia) are linked into two‐dimensional layers by N—H...O hydrogen bonds. The component ions in (II) are joined together by a combination of N/O/C—H...O hydrogen bonds and C—H...π and anion...π interactions, forming a three‐dimensional network. A structural understanding of (Ia) and (II) may provide some useful information about how and why their metal–organic complexes display various biological activities and function in catalytic processes.     

Synthesis and pharmacological properties of N‐substituted‐N′‐(4,6‐dimethylpyrimidin‐2‐yl)‐thiourea derivatives and related fused heterocyclic compounds

A series of new N‐Substituted‐N′‐(4,6‐dimethylpyrimidin‐2‐yl)‐thiourea derivatives ( 3a , 3b , 3c , 3d ) and related fused heterocyclic compounds ( 4a , 4b , 4c , 4d ) were synthesized using tetrabutylammonium bromide as phase transfer catalyst (PTC). N‐[(2E)‐5,7‐dimethyl‐2H‐[1,2,4] thiadiazolo [2,3‐a] pyrimidin‐2‐ylidene] derivatives ( 4a , 4b , 4c , 4d ) were prepared by oxidative cyclization of 3a , 3b , 3c , 3d . The structures of these novel compounds were characterized by IR, ¹H NMR, ¹³C NMR, mass spectrometry, and the elemental analysis. The crystal structures were determined from single crystal X‐ray diffraction data. The results indicated that the compounds possessed a broad spectrum of activity against the tested microorganisms and showed higher activity against fungi than bacteria. Compounds 3d and 3a exhibited the greatest antimicrobial activity. J. Heterocyclic Chem., 2011.     

N,N′‐Bis(2‐hydroxycyclohexyl)‐N,N′‐bis(2‐hydroxyethyl)ethane‐1,2‐diaminium dichloride

The achiral meso form of the title compound, C₁₈H₃₈N₂O₄²⁺·2Cl⁻, crystallizes to form undulating layers consisting of chains linked via weak hydroxyalkyl C—H...Cl contacts. The chains are characterized by centrosymmetric hydrogen‐bonded dimers generated via N—H...Cl and hydroxycycloalkyl O—H...Cl interactions. trans‐N‐Alkyl bridges subdivide the chains into hydrophilic segments flanked by hydrophobic cycloalkyl stacks along [001].     

Novel,organosoluble, light‐colored fluorinated polyimides based on 2,2′‐bis(4‐amino‐2‐trifluoromethylphenoxy)biphenyl or 2,2′‐bis(4‐amino‐2‐trifluoromethylphenoxy)‐1,1′‐binaphthyl

Two series of fluorinated polyimides were prepared from 2,2′‐bis(4‐amino‐2‐trifluoromethylphenoxy)biphenyl ( 2 ) and 2,2′‐bis(4‐amino‐2‐trifluoromethylphenoxy)‐1,1′‐binaphthyl ( 4 ) with various aromatic dianhydrides via a conventional, two‐step procedure that included a ring‐opening polyaddition to give poly(amic acid)s, followed by chemical or thermal cyclodehydration. The inherent viscosities of the polyimides ranged from 0.54 to 0.73 and 0.19 to 0.36 dL/g, respectively. All the fluorinated polyimides were soluble in many polar organic solvents, such as N,N‐dimethylacetamide and N‐methylpyrrolidone, and afforded transparent and light‐colored films via solution‐casting. These polyimides showed glass‐transition temperatures in the ranges of 222–280 and 257–351 °C by DSC, softening temperatures in the range of 264–301 °C by thermomechanical analysis, and a decomposition temperature for 10% weight loss above 520 °C both in nitrogen and air atmospheres. The polyimides had low moisture absorptions of 0.23–0.58%, low dielectric constants of 2.84–3.61 at 10 kHz, and an ultraviolet–visible absorption cutoff wavelength at 351–434 nm. Copolyimides derived from the same dianhydrides with an equimolar mixture of 4,4′‐oxydianiline and diamine 2 or 4 were also prepared and characterized. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 2416–2431, 2004     

Highly soluble fluorinated polyimides based on an asymmetric bis(ether amine): 1,7‐bis(4‐amino‐2‐trifluoromethylphenoxy)naphthalene

A novel structurally asymmetric bis(ether amine) monomer containing trifluoromethyl groups, 1,7‐bis(4‐amino‐2‐trifluoromethylphenoxy)naphthalene, was prepared through the nucleophilic substitution reaction of 2‐chloro‐5‐nitrobenzotrifluoride and 1,7‐dihydroxynaphthalene in the presence of potassium carbonate in N‐methyl‐2‐pyrrolidone (NMP), followed by catalytic reduction with hydrazine and Pd/C in ethanol. A series of new fluorine‐containing polyimides were synthesized from the diamine with various commercially available aromatic tetracarboxylic dianhydrides using a two‐stage process with thermal or chemical imidization method. The intermediate poly(amic acid)s had inherent viscosities between 0.93 and 1.93 dL/g. Most of the polyimides obtained from both routes were readily soluble in many organic solvents such as NMP and N,N‐dimethylacetamide (DMAc). All the polyimides could afford transparent, flexible, and strong films with low moisture absorptions of 0.29–0.69%, low dielectric constants of 2.81–3.23 at 10 kHz, and an ultraviolet‐visible absorption cutoff wavelength at 358–423 nm. The glass‐transition temperatures (T_gs) (by DSC) and softening temperatures (by thermomechanical analysis) of the polyimides were recorded in the range of 222–271 °C and 210–266 °C, respectively. Decomposition temperatures for 10% weight loss all occurred above 500 °C in both nitrogen and air atmospheres. For a comparative study, some properties of the present polyimides will be compared with those of structurally related ones derived from 1,7‐bis(4‐aminophenoxy)naphthalene and 1,5‐bis(4‐amino‐2‐trifluoromethylphenoxy)naphthalene. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1756–1770, 2009     

(2E)‐N‐(2‐Iodo‐4,6‐dimethylphenyl)‐2‐methylbut‐2‐enamide

The title compound, C₁₄H₁₈INO, crystallizes as +sc/+sp/+sc 2‐iodoanilide molecules (and racemic opposites) and shows significant intermolecular I...O interactions in the solid state, forming dimeric pairs about centres of symmetry. Under asymmetric Heck conditions, the S enantiomer of the dihydroindol‐2‐one was obtained using (R)‐(+)‐2,2′‐bis(diphenylphosphino)‐1,1′‐binaphthyl [(R)‐BINAP], suggesting a mechanism that proceeds by oxidative addition to give the title (P) enantiomer of the compound and pro‐S coordination of the Re face of the alkene in a conformation similar to that defined crystallographically, except that rotation about the C—C bond of the butenyl group is required.     

Bis(2‐amino‐3,5‐dibromo‐4,6‐dimethyl­pyridinium) hexa­bromido­stannate(IV)

In the title compound, (C₇H₉Br₂N₂)₂[SnBr₆], the cations and centrosymmetric anions are stacked in alternating layers that show no significant inter­molecular inter­actions within each stack. Extensive cation⋯[SnBr₆]²⁻ inter­actions are found, represented by short Br⋯Br inter­actions, along with different Br⋯HN (pyridine and amine) and weaker Br⋯HCH₂ hydrogen‐bonding motifs.     

Hydrogen bonding in meso‐4,5‐diphenyl‐3,6‐diaza­octane‐1,8‐diol: the formation of one‐dimensional linear chains of edge‐fused rings

The molecule of the title compound, C₁₈H₂₄N₂O₂, resides on a crystallographic inversion centre. The mol­ecule adopts a transoid conformation with respect to the central C—C single bond and is in the meso form. A polarimetric study of the compound did not show any optical activity, indicating that the compound is a racemic mixture entirely consistent with the centrosymmetric space group. In the mol­ecule, there is one intra­molecular N—H⋯O inter­action, resulting in the formation of a five‐membered ring. In the crystal structure, inter­molecular O—H⋯N and C—H⋯O inter­actions are also observed. These inter­actions form an R₂²(9) ring and one‐dimensional linear chains of edge‐fused rings running parallel to the [010] direction, which stabilize the crystal packing.     

N‐Benzyl‐2,5‐bis(2‐thienyl)­pyrrole

The solid‐state structure of the title compound, C₁₉H₁₅NS₂, is unusual among substituted thiophene/pyrrole derivatives in that the molecular packing is dominated by π–π interactions between the benzyl substituents. This may be due to the large torsion angles observed between adjacent heterocycles. Torsion angles between adjacent rings in poly­pyrrole and poly­thio­phene conducting polymers are related to conjugation length and the conductivity properties of the polymer materials. The title compound crystallizes in space group P2₁/c with two mol­ecules in the asymmetric unit, both of which exhibit disorder in one of their thio­phene rings.     

Highly stable electrochromic polyamides based on N,N‐bis(4‐aminophenyl)‐N′,N′‐bis(4‐tert‐butylphenyl)‐1,4‐phenylenediamine

A new triphenylamine‐containing aromatic diamine monomer, N,N‐bis(4‐aminophenyl)‐N′,N′‐bis(4‐tert‐butylphenyl)‐1,4‐phenylenediamine, was synthesized by an established synthetic procedure from readily available reagents. A novel family of electroactive polyamides with di‐tert‐butyl‐substituted N,N,N′,N′‐tetraphenyl‐1,4‐phenylenediamine units were prepared via the phosphorylation polyamidation reactions of the newly synthesized diamine monomer with various aromatic or aliphatic dicarboxylic acids. All the polymers were amorphous with good solubility in many organic solvents, such as N‐methyl‐2‐pyrrolidinone (NMP) and N,N‐dimethylacetamide, and could be solution‐cast into tough and flexible polymer films. The polyamides derived from aromatic dicarboxylic acids had useful levels of thermal stability, with glass‐transition temperatures of 269–296 °C, 10% weight‐loss temperatures in excess of 544 °C, and char yields at 800 °C in nitrogen higher than 62%. The dilute solutions of these polyamides in NMP exhibited strong absorption bands centered at 316–342 nm and photoluminescence maxima around 362–465 nm in the violet‐blue region. The polyamides derived from aliphatic dicarboxylic acids were optically transparent in the visible region and fluoresced with a higher quantum yield compared with those derived from aromatic dicarboxylic acids. The hole‐transporting and electrochromic properties were examined by electrochemical and spectro‐electrochemical methods. Cyclic voltammograms of the polyamide films cast onto an indium‐tin oxide‐coated glass substrate exhibited two reversible oxidation redox couples at 0.57–0.60 V and 0.95–0.98 V versus Ag/AgCl in acetonitrile solution. The polyamide films revealed excellent elcterochemical and electrochromic stability, with a color change from a colorless or pale yellowish neutral form to green and blue oxidized forms at applied potentials ranging from 0.0 to 1.2 V. These anodically coloring polymeric materials showed interesting electrochromic properties, such as high coloration efficiency (CE = 216 cm²/C for the green coloring) and high contrast ratio of optical transmittance change (ΔT%) up to 64% at 424 nm and 59% at 983 nm for the green coloration, and 90% at 778 nm for the blue coloration. The electroactivity of the polymer remains intact even after cycling 500 times between its neutral and fully oxidized states. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 2330–2343, 2009