Simvastatin

Simvastatin, or (1S,3R,7S,8S,8aR)‐8‐{2‐[(2R,4R)‐4‐hydroxy‐6‐oxo‐3,4,5,6‐tetra­hydro‐2H‐pyran‐2‐yl]­ethyl}‐3,7‐di­methyl‐1,2,3,7,8,8a‐hexa­hydro­naphthalen‐1‐yl 2,2‐di­methyl­butan­oate, C₂₅H₃₈O₅, is almost isostructural with lovastatin, and the general conformational features are closely related to those of other reported crystal structures of statins. The only hydrogen bond present facilitates the formation of infinite chains of mol­ecules along the b axis.     

Three ginkgolide hydrates from Ginkgo biloba L.: ginkgolide A monohydrate,ginkgolide C sesquihydrate and ginkgolide J dihydrate,all determined at 120 K

A low‐temperature structure of ginkgolide A monohydrate, (1R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11aS)‐3‐(1,1‐dimethylethyl)‐hexa­hydro‐4,7b‐di­hydroxy‐8‐methyl‐9H‐1,7a‐epoxymethano‐1H,6aH‐cyclo­penta­[c]­furo­[2,3‐b]­furo­[3′,2′:3,4]­cyclopenta­[1,2‐d]­furan‐5,9,12(4H)‐trione monohydrate, C₂₀H₂₄O₉·H₂O, obtained from Mo Kα data, is a factor of three more precise than the previous room‐temperature determination. A refinement of the ginkgolide A monohydrate structure with Cu Kα data has allowed the assignment of the absolute configuration of the series of compounds. Ginkgolide C sesquihydrate, (1S,2R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11S,11aR)‐3‐(1,1‐di­methyl­ethyl)‐hexa­hydro‐2,4,7b,11‐tetrahydroxy‐8‐methyl‐9H‐1,7a‐epoxy­methano‐1H,6aH‐cyclopenta­[c]­furo­[2,3‐b]­furo­[3′,2′:3,4]­cyclo­penta­[1,2‐d]­furan‐5,9,12(4H)‐trione sesquihydrate, C₂₀H₂₄O₁₁·1.5H₂O, has two independent diterpene mol­ecules, both of which exhibit intramolecular hydrogen bonding between OH groups. Ginkgolide J dihydrate, (1S,2R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11aS)‐3‐(1,1‐di­methyl­ethyl)‐hexa­hydro‐2,4,7b‐tri­hydroxy‐8‐methyl‐9H‐1,7a‐epoxy­methano‐1H,6aH‐cyclo­penta­[c]­furo­[2,3‐b]furo[3′,2′:3,4]­cyclo­penta­[1,2‐d]­furan‐5,9,12(4H)‐trione dihydrate, C₂₀H₂₄O₁₀·2H₂O, has the same basic skeleton as the other ginkgolides, with its three OH groups having the same configurations as those in ginkgolide C. The conformations of the six five‐membered rings are quite similar across ­ginkgolides A–C and J, except for the A and F rings of ginkgolide A.     

2′,3′‐Dehydrosalannol

The title compound, methyl (2aS,3R,5R,5aS,6S,6aS,8R,9aS,10aR,10bR,10cS)‐8‐(3‐furyl)‐2a,4,5,5a,6,6a,8,9,9a,10a,10b,10c‐dodeca­hydro‐3‐hydroxy‐2a,5a,6a,7‐tetra­methyl‐5‐(3‐methylbut‐2‐enoyl­oxy)‐2H,3H‐cyclo­penta­[4′,5′]­furo­[2′,3′:6,5]benzo[cd]­isobenzo­furan‐6‐acetate, C₃₂H₄₂O₈, was isolated from uncrushed green leaves of Azadirachta indica A. Juss (neem) and has been found to possess antifeedant activity against Spodptera litura. The conformations of the functional groups are similar to those of 3‐des­acetyl­salannin, which was isolated from neem kernels. The mol­ecules are linked into chains by intermolecular O—H?O hydrogen bonds.     

A pair of epimeric 13‐hydroxy‐2,3,6,7‐tetra­methoxy‐8b,11,12,12a,13,13a‐hexa­hydro‐9H‐9a‐aza­cyclo­penta­[b]tri­phenyl­ene‐10‐ones

The structures of two compounds which are intermediates in the synthesis of phenanthroindolizidine alkaloids have been determined. (8bS,13aS,14R,14aR)‐8b,9,11,12,13,13a,14,14a‐Octa­hydro‐14‐hydroxy‐2,3,6,7‐tetra­methoxy­dibenzo­[f,h]pyrrolo[1,2‐b]­isoquinolin‐11‐one acetone solvate, C₂₄H₂₇NO₆·C₃H₆O, (II), crystallizes in a chiral space group with one solvent mol­ecule (acetone) present in the asymmetric unit. On the other hand, (8bS,13aS,14S,14aR)‐8b,9,11,12,13,13a,14,14a‐octa­hydro‐14‐hydroxy‐2,3,6,7‐tetra­methoxy­dibenzo­[f,h]pyrrolo[1,2‐b]­isoquinolin‐11‐one, C₂₄H₂₇NO₆, (III), crystallizes in a centrosymmetric space group with two mol­ecules in the asymmetric unit and with no solvent present. The two mol­ecules in the asymmetric unit of (III) are structurally the same. Compounds (II) and (III) are epimers at the C atom carrying the OH group; otherwise they are very similar in structure.     

The natural diterpenoid kamebanin

Kamebanin, alternatively called rel‐(?)‐(1R,4R,8S,9R,10S,13S,16R)‐2,8,16‐tri­hydroxy‐5,5,9‐tri­methyl‐14‐methyl­enetetra­cyclo­[11.2.1.0^1,10.0^4,9]­hexadecan‐15‐one, C₂₀H₃₀O₄, is a natural diterpenoid which has cytotoxic and antibacterial activity. The mol­ecule is composed of three six‐membered rings, which all adopt chair conformations, and one five‐membered ring, which adopts an envelope conformation. The conjugated α‐­methyl­ene­cyclo­pentanone ring is the active part in the mol­ecule due to the ring strain. All three hydroxy groups serve as hydrogen‐bond donors and acceptors, forming a continuous two‐dimensional network.     

(4R,4aR,6S,7S,7aS)‐6‐Hydro­xy‐7‐hy­droxy­methyl‐4‐methyl­per­hydro­cyclo­penta­[c]­pyran‐1‐one chloro­form solvate from Valeriana laxiflora

The structure of an iridolactone isolated from Valeriana laxiflora was established as (4R,4aR,6S,7S,7aS)‐6‐hydroxy‐7‐hydroxy­methyl‐4‐methyl­per­hydro­cyclo­penta­[c]­pyran‐1‐one chloro­form solvate, C₁₀H₁₆O₄·CHCl₃. The two rings are cis‐fused. The δ‐lactone ring adopts a slightly twisted half‐chair conformation with approximate planarity of the lactone group and the cyclo­pentane ring adopts an envelope conformation. The hydroxy group, the hydroxymethyl group and the methyl group all have β orientations. The absolute configuration was determined using anomalous dispersion data enhanced by the adventitious inclusion of a chloro­form solvent mol­ecule. Hydro­gen bonding, crystal packing and ring conformations are discussed in detail.     

Samaderin B and C from Samadera indica

Samaderin B, or (1R,2S,5R,5aR,7aS,11S,11aS,11bR,14S)‐1,7,7a,11,11a,11b‐hexa­hydro‐1,11‐di­hydroxy‐8,11a,14‐tri­methyl‐2H‐5a,2,5‐(methan­oxy­metheno)­naphth­[1,2‐d]­oxepine‐4,6,10(5H)‐trione, C₁₉H₂₂O₇, and samaderin C, or (1R,2S,5R,5aR,7aS,10S,11S,11aS,11bR,14S)‐7,7a,10,11,11a,11b‐hexa­hydro‐1,10,11‐tri­hydroxy‐8,11a,14‐tri­methyl‐2H‐5a,2,5‐(methan­oxy­metheno)­naphth­[1,2‐d]­oxepine‐4,6(1H,5H)‐dione, C₁₉H₂₄O₇, were isolated from the seed kernels of Samadera indica and were shown to exhibit antifeedant activity against Spodoptera litura third‐instar larvae. The replacement of the carbonyl group in samaderin B by a hydroxy group in samaderin C causes conformational changes at the substitution site, but the overall conformation is not affected; however, the compounds pack differently in the crystal lattice.     

Asperuloside monohydrate

The title compound, [2aS‐(2aα,4aα,5α,7bα)]‐5‐(β‐d ‐gluco­pyran­osyl­oxy)‐2a,4a,5,7b‐tetra­hydro‐1‐oxo‐1H‐2,6‐dioxa­cyclo­pent­[cd]­inden‐4‐yl­methyl acetate monohydrate, C₁₈H₂₂O₁₁·H₂O, was extracted from the Turkish plant Putoria calabrica (L. fil.) DC. The three fused rings have envelope or distorted envelope conformations and form a bowl in which ring strain causes distortion of some bond angles and significant pyramidalization of two of the Csp² atoms. The ring junction H atoms are all cis to one another and the glycosidic linkage is in the β axial position. The structure incorporates two symmetry‐independent water mol­ecules, each of which is located on a twofold axis. Intermolecular hydrogen bonds involving all the hydroxy groups and water mol­ecules link the mol­ecules into a complex three‐dimensional framework.     

Tetracycline hydrochloride: a synchrotron microcrystal study

The title compound, [(4S,4aS,5aS,6S,12aS)‐2‐amino­hydroxy­methyl­ene‐1,2,3,4,4a,5,5a,6,11,12a‐deca­hydro‐6,10,12,12a‐tetra­­hydroxy‐6‐methyl‐1,3,11‐trioxo­naphthacen‐4‐yl]­di­methyl­amm­onium chloride, C₂₂H₂₅N₂O₈⁺·Cl^?, a well known antibiotic, has been structurally characterized from an individual coarse powder grain by use of high‐intensity synchrotron radiation, in conjunction with an exercise in ab initio powder diffraction structure solution. Free refinement of all H atoms establishes the major tautomeric form of the protonated tetracycline mol­ecule without prejudice. The mol­ecule has extensive intramolecular hydrogen bonding involving most of the potential donors and acceptors, and all intermolecular hydrogen bonding uses the chloride anion as acceptor.     

6‐Acetonyldi­hydro­avicine

The title compound, 1‐(5‐methyl‐5,6‐di­hydro­[1,3]­dioxolo­[4′,5′:4,5]­benzo­[c][1,5]­dioxolo­[4,5‐j]­phenanthridin‐6‐yl)­acetone, C₂₃H₁₉NO₅, isolated from the stem bark of Zanthoxy­lum rhoifolium, crystallizes as a racemate in space group P. The structure shows two aromatic ring systems, each terminated by a five‐membered dioxole ring, coupled by an N‐containing ring. The core of the mol­ecule is almost planar; the planes of the two ring systems form an angle of 18.42 (6)°. The packing shows the mol­ecules parallel to each other and about 3.5 Å apart with graphite‐type interactions. The N‐methyl and acetone groups, which are anti with respect to one another, lie out of the plane and pack in spaces between neighbouring mol­ecules.     

The sesquiterpenoid nootkatone and the absolute configuration of a di­bromo derivative

Nootkatone, or (4R,4aS,6R)‐4,4a,5,6,7,8‐hexa­hydro‐4,4a‐di­methyl‐6‐(1‐methyl­ethenyl)­naphthalen‐2(3H)‐one, C₁₅H₂₂O, a sesquiterpene with strong repellent properties against Formosan subterranean termites and other insects, has the valencene skeleton. The di­bromo derivative (1S,3R,4S,4aS,6R,8aR)‐1,3‐di­bromo‐6‐iso­propyl‐4,4a‐di­methyl‐1,2,3,4,5,6,7,8‐octa­hydro­naphthalen‐2‐one, C₁₅H₂₄Br₂O, has two independent mol­ecules in the asymmetric unit, which differ in the rotation of the iso­propyl group with respect to the main skeleton. The C—Br distances are in the range 1.950 (4)–1.960 (4) Å. Both independent molecules form zigzag chains, with very short intermolecular carbonyl–carbonyl interactions, having the perpendicular motif and O⋯C distances of 2.886 (6) and 2.898 (6) Å. These chains are flanked by intermolecular Br⋯Br interactions of distances in the range 4.067 (1)–4.218 (1) Å. The absolute configuration of the di­bromo derivative was determined, from which that of nootkatone was inferred.     

Precursors to dodecahedrane

The title compounds, (2R,2′′S,3b′S,4a′R,7b′S,8a′R)‐per­hydro­di­spiro­[furan‐2,3′‐di­cyclo­penta­[a,e]­pentalene‐7′,2′′‐furan]‐5,5′′‐dione, C₂₀H₂₆O₄, and (3aR,3bR,4aR,4bS,5aS,8aR,8bR,9aR,9bS,10aS)‐per­hydro­dipentaleno­[2,1‐a:2′,1′‐e]­pentalene‐1,6‐dione, C₂₀H₂₆O₂, are intermediates identified during the synthesis of dodecahedrane. Crystallographic studies have established the ring‐junction stereochemistry for these important intermediates. All the ring junctions are cis‐fused, and the molecular packing is stabilized by van der Waals interactions.     

(4S,5S)‐(+)‐4‐Hydro­xy­methyl‐2,5‐di­phenyl­oxazoline

The absolute configuration of the title compound, alter­natively called (+)‐(4,5‐di­hydro‐2,5‐di­phenyl­oxazol‐4‐yl)­methanol, C₁₆H₁₅NO₂, has been confirmed as 4S,5S. The hydroxy­methyl group and phenyl ring at the asymmetric C atoms exhibit β and α orientations, respectively. The exocyclic C—C bonds at the asymmetric C atoms are mutually anticlinal (?ac). The hydroxyl group and the N atom of the oxazoline ring are involved in an intermolecular hydrogen bond leading to chains of mol­ecules.     

Hamigerin A and a hamigerin D decomposition product

The sponge Hamigera tarangaensis has yielded eight new compounds and we report here the structure of one of these compounds, hamigeran A, C₂₀H₂₅BrO₅, or methyl 7‐bromo‐4β,6‐di­hydroxy‐1β‐iso­propyl‐3aα,8‐di­methyl‐5‐oxo‐1a,3a,4,5‐tetra­hydro­cyclo­penta­[a]­naphthalene‐4‐carboxyl­ate, and the decomposition product of hamigeran D, C₂₁H₂₈BrNO₄, namely 2‐(8‐bromo‐2β,7‐di­methyl‐4‐oxo‐1,3α‐benzox­aza­n‐5‐yl)‐3‐iso­propylcyclo­pentyl­acetic acid.     

The antifolate trimetrexate: ­observation of the enzyme‐binding conformation

The crystal structure of the title compound contains four 2,4‐di­amino‐5‐methyl‐6‐[(3,4,5‐tri­methoxy­anilino)­methyl]­quin­az­oline mol­ecules, two di­methyl sulfoxide mol­ecules and three water mol­ecules in the asymmetric unit, i.e. 4C₁₉H₂₃N₅O₃·2C₂H₆OS·3H₂O. All four quinazoline mol­ecules adopt trans,gauche conformations. An extensive hydrogen‐bond network involving N?N base‐pairing interactions, as well as the di­methyl sulfoxide and water mol­ecules, stabilizes the crystal structure.     

Two 2,2‐dihalo‐N‐(1‐phenyl­ethyl)­cyclo­propane‐1‐carbox­amides

The crystal structures of (1R,1′S)‐2′,2′‐di­chloro‐N‐(1‐phenyl­ethyl)­cyclo­propane‐1′‐carbox­amide, C₁₂H₁₃Cl₂NO, (I), and (1R,1′R)‐2′,2′‐di­fluoro‐N‐(1‐phenyl­ethyl)­cyclo­propane‐1′‐car­box­amide, C₁₂H₁₃F₂NO, (II), have been determined. Both crystals contain two independent mol­ecules with different conformations of the phenyl­ethyl groups. In the crystals of both compounds, the mol­ecules are linked together by N—H⃛O hydrogen bonds, thus forming chains in the a direction.     

Supramolecular hydrogen‐bonded hexamers in two 5‐aryl‐3‐methyl‐1‐phenyl‐1,6,7,8‐tetra­hydro­pyrazolo­[3,4‐b][1,4]­diazepines

In both title compounds, i.e. 3‐methyl‐1,5‐di­phenyl‐1,6,7,8‐tetra­hydro­pyrazolo­[3,4‐b][1,4]­diazepine, C₁₉H₁₈N₄, (I), and 5‐(4‐chloro­phenyl)‐3‐methyl‐1‐phenyl‐1,6,7,8‐tetra­hydro­pyra­zolo­[3,4‐b][1,4]­diazepine, C₁₉H₁₇ClN₄, (II), an N—H?N hydrogen bond links six mol­ecules to form an R(30) ring. Compound (I) crystallizes in the R space group and (II) crystallizes in P with three mol­ecules in the asymmetric unit. The mol­ecule of (I) contains a disordered seven‐membered ring.     

Water molecules in the crystal structure of tricyclic acyclovir

The biologically important mol­ecule tricyclic acyclo­vir, presented here as 3‐[(2‐hydroxy­ethoxy)­methyl]‐6‐methyl‐3H‐imidazolo­[1,2‐a]­purin‐9(5H)‐one dihydrate, C₁₁H₁₃N₅O₃·2H₂O, shows conformational flexibility, which is observed in the solid state as two symmetrically independent mol­ecules with different side‐chain conformations. Additionally, one of these mol­ecules exhibits side‐chain disorder, such that there are three different conformations in the crystal. Water mol­ecules found in the crystal form (H₂O)₈ clusters which are located between mol­ecules of tricyclic acyclovir. The complex hydrogen‐bond network formed between water and tricyclic acyclovir in the solid state may be related to the solvation of the mol­ecules in solution.     

Racemic and chiral 1‐[N‐(chloro­acetyl)carbamoylamino]‐2,3‐dihydro‐1H‐inden‐2‐yl chloroacetate

In the racemic crystals of (1S,2R)‐ or (1R,2S)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (I), the enantiomeric mol­ecules form a dimeric structure via the N—H?O cyclic hydrogen bond of the carbamoyl moieties. In the chiral crystals of (—)‐(1S,2R)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (II), the N—­H?O intermolecular hydrogen bond forms a zigzag chain around the twofold screw axis. The melting points and calculated densities of (I) and (II) are 446 and 396 K, and 1.481 and 1.445 Mg m^?3, respectively.     

Ranitidine hydro­chloride,a polymorphic crystal form

In the title compound, di­methyl­({5‐[2‐(1‐methyl­amino‐2‐nitro­eth­enyl­amino)­ethyl­thio­methyl]‐2‐furyl}­methyl)­ammon­ium chloride, C₁₃H₂₃N₄O₃S⁺·­Cl^?, protonation occurs at the di­methyl­amino N atom. The ranitidine mol­ecule adopts an eclipsed conformation. Bond lengths indicate extensive electron delocalization in the N,N′‐di­methyl‐2‐nitro‐1,1‐ethenedi­amine system of the mol­ecule. The nitro and methyl­amino groups are trans across the side chain C=C double bond, while the ethyl­amino and nitro groups are cis. The Cl^? ions link mol­ecules through hydrogen bonds.