耗散粒子动力学研究片状双层——囊泡转变

片状双层是囊泡自发形成过程中的重要中间态,由片状双层向囊泡的转变机理一直未被认清．本文以磷脂分子DMPC作为模拟对象,采用普适性的粗粒化模型和耗散粒子动力学模拟方法,以体系粒子无序分布和无应力片状双层作为初态,对水溶液中片状双层——囊泡的转变过程进行了深入研究．发现尾-水粒子间憎水作用能最小化是片状双层卷曲形成囊泡的微观本质．囊泡的双分子层为二维流体．此外还得到了囊泡上粒子的位置分布和化学键排列取向等方面的结构信息．     

仿生信号转导体系的构建:囊泡表面磷脂信号分子诱发的乳酸脱氢酶的激活

以细胞肌醇磷脂信号转导途径为原型,在合成肽脂囊泡(人工细胞膜模型)上,利用天然磷脂为信号分子,成功地激活了处于囊泡表面的乳酸脱氢酶．为此,将1,2-二-十四烷基磷脂酰乙醇胺等天然磷脂嵌入合成肽脂N,N-二-十六烷基-N^a-6-三甲胺基己酰基-L-甘氨酰胺囊泡中,制备了稳定的混合双层膜囊泡,用透射电子显微照相、动态光散射及差示扫描量热等手段确认了混合囊泡的形态及粒径分布．以磷酸吡哆醛等维生素B6类化合物为信号分子激活剂,利用它们与天然磷脂形成复合体,进而与Cu^2 形成强的金属配合物的性质,实现了对处于囊泡表面、被Cu^2 抑制的乳酸脱氢酶的激活,构建了一个新的仿生信号转导体系．紫外一可见光谱实验证实了以上结果．此外,结果还表明囊泡表面的疏水作用和静电引力是促进天然磷脂一磷酸吡哆醛复合体形成的主要因素．囊泡表面的疏水微环境作为反应场是构建此仿生信号转导体系不可缺少的要素．     

大分子拥挤环境中脂肪酸影响磷脂囊泡相变的差示扫描量热研究

脂肪酸诱导的磷脂膜的热力学行为对于认识细胞内复杂的机制有着重要意义,而前人在研究脂肪酸与磷脂膜相互作用时大都在稀溶液中进行;拥挤环境下脂肪酸诱导磷脂膜的相变行为还未见报道。本文以二肉豆蔻酰磷脂酰胆碱(DMPC)构建囊泡模型,采用差示扫描量热法系统地研究了在不同浓度、不同分子量的聚乙二醇(PEG)拥挤环境中不同结构的脂肪酸对DMPC磷脂囊泡相变的影响。研究结果表明,在拥挤环境中,PEG对纯的磷脂囊泡相变的影响与大分子的分子量和浓度相关。对于脂肪酸/磷脂囊泡(FA/DMPC),PEG的存在对囊泡相变产生显著影响。在所考察的分子量和浓度范围内,PEG使FA/DMPC囊泡相变增加。短链饱和脂肪酸、不饱和脂肪酸原本使DPMC囊泡相变降低,但PEG缩小了降低幅度,甚至导致相变增加。进一步的研究表明,在大多数情况下,PEG对FA/DMPC的相变具有协作增强效应,且其影响均与大分子的分子量和浓度相关。另外,随着PEG浓度的升高,磷脂囊泡的协同单位数逐渐降低,表明拥挤环境会影响磷脂双分子层的均一性,使协同发生相变的分子数降低。本文的研究表明,大分子拥挤环境能够对扰动的磷脂双分子层起到一定的修复作用,这一现象在生物膜相关领域不可忽视。     

拉曼光谱法在膜模拟体系结构研究中的应用

表面活性剂单分子层和双分子层以及磷脂泡囊是最广泛应用的膜模拟体系，本文总结了二十年来以拉曼光谱方法为手段在该研究领域内的研究结果，并着重评述了近十年来的研究进展。     

支撑磷脂双层膜的研究进展

支撑磷脂双层膜(supported phospholipid bilayers,SPBs)是细胞膜研究中普及的模型,是固定生物活性物质的理想材料,不仅可以保持生物分子的活性,还能有效抑制其他生物分子的非特异性吸附,在跨膜蛋白、仿生膜、水处理、生物医学和生物传感器等研究领域具有广泛的应用前景。本文介绍了支撑磷脂双层膜的表征方法和制备方法,包括Langmuir Blodgett(LB)膜提拉法、囊泡融合法和LB膜提拉法与囊泡融合联合法;详细阐述了囊泡融合法制备SPBs的机理;综述了囊泡融合法制备SPBs的影响因素,包括囊泡浓度、缓冲溶液、温度、囊泡和基底表面电荷等因素;列举了支撑磷脂膜的应用,并展望了支撑磷脂双层膜的研究趋势。     

磁性非对称双链长表面活性剂囊泡凝胶

合成了一系列含磁性反离子的非对称双疏水链长的阳离子表面活性剂,其中三氯一溴铁合十六烷基戊基二甲基铵(C_(16)C_5DMA~+[FeCl_3Br]-~)与偶氮羧酸钠盐(AzoNa_4)在酸性条件水溶液中形成磁性囊泡凝胶。运用cryo-透射电镜(TEM)、冷冻蚀刻TEM(FF-TEM)、流变仪、傅里叶变换红外光谱(FT-IR)和超导量子干涉(SQUID)等表征技术对囊泡凝胶进行了结构和性质研究,结果发现:凝胶含有曲率多变的融合性的双层囊泡,这些双分子层结构模构了自然界中各种物象的结构轮廓,展现了不可预测的多变曲率和良好柔性。聚集体双分子层膜内由长短不对称烷基链采取交错相扣的双分子层排列模式,这种构建模式结构稳定,短烷基链可游离出囊泡双分子层并伸向外部水相介质。两个相邻囊泡间的短链在疏水相互作用下形成非共价的囊泡"补丁",疏水的囊泡"补丁"克服相邻囊泡之间的斥力而融合。磁性反离子[FeCl_3Br]~-不仅赋予囊泡磁性,且在囊泡的形成过程中调控烷基链的组装。这种多形态融合性囊泡为揭示膜曲率的调节机制和构建人工细胞提供实验数据和理论参考。     

稀土离子配合物与磷脂双分子膜的作用研究

利用一维和二维Ｈ核磁共振方法研究了柠檬酸稀土、稀土－ＤＴＰＡ配合物与磷脂双分子膜的作用，结果表明Ｌ在近生理条件下（ＰＨ＝７．４）及 柠檬酸配体的磷脂双分子膜体系中，稀土离子首先与柠檬酸体作用，形成的配合物对磷脂双分子膜的结构影响较小，稀土－ＤＴＰＡ配合物对磷脂双分子膜的结构没有影响这些结果为科学地评价稀土离子进行体内的毒性提供了实验依据。     

大分子拥挤环境中脂肪酸影响磷脂囊泡相变的差示扫描量热研究（英文）

脂肪酸诱导的磷脂膜的热力学行为对于认识细胞内复杂的机制有着重要意义,而前人在研究脂肪酸与磷脂膜相互作用时大都在稀溶液中进行;拥挤环境下脂肪酸诱导磷脂膜的相变行为还未见报道。本文以二肉豆蔻酰磷脂酰胆碱(DMPC)构建囊泡模型,采用差示扫描量热法系统地研究了在不同浓度、不同分子量的聚乙二醇(PEG)拥挤环境中不同结构的脂肪酸对DMPC磷脂囊泡相变的影响。研究结果表明,在拥挤环境中,PEG对纯的磷脂囊泡相变的影响与大分子的分子量和浓度相关。对于脂肪酸/磷脂囊泡(FA/DMPC),PEG的存在对囊泡相变产生显著影响。在所考察的分子量和浓度范围内,PEG使FA/DMPC囊泡相变增加。短链饱和脂肪酸、不饱和脂肪酸原本使DPMC囊泡相变降低,但PEG缩小了降低幅度,甚至导致相变增加。进一步的研究表明,在大多数情况下,PEG对FA/DMPC的相变具有协作增强效应,且其影响均与大分子的分子量和浓度相关。另外,随着PEG浓度的升高,磷脂囊泡的协同单位数逐渐降低,表明拥挤环境会影响磷脂双分子层的均一性,使协同发生相变的分子数降低。本文的研究表明,大分子拥挤环境能够对扰动的磷脂双分子层起到一定的修复作用,这一现象在生物膜相关领域不可忽视。     

胆固醇对卵磷脂囊泡稳定性的影响

采用透射电子显微镜研究了Gemini表面活性剂诱导卵磷脂囊泡结构改变的机理, 用Langmuir膜天平研究卵磷脂和胆固醇的不溶单分子混合膜在气-液界面的行为和混合膜分子间的相互作用, 并结合动态光散射技术和停留法探讨胆固醇对Gemini表面活性剂诱导卵磷脂囊泡结构改变的影响. 从电镜结果可以推测带正电荷的Gemini表面活性剂分子会嵌入到带负电荷的卵磷脂囊泡双分子层的外层, 囊泡的双分子层之间的相互吸引力使双分子层的厚度减少, 由于嵌入的表面活性剂分子在囊泡的双分子层中分布是不均匀的, 这种分布的不均匀性必然会导致双分子层厚度的不均匀, 从而使囊泡破裂. 混合膜的过剩面积和动力学结果表明, 胆固醇和卵磷脂是相互吸引的, 即胆固醇的加入使卵磷脂囊泡更不容易被表面活性剂破坏.     

不含蛋白质的功能泡囊膜及对酶的模拟

本篇综述了模拟生物膜的不含蛋白质的功能泡囊膜的建立过程,并介绍了这类功能泡囊膜所进行的模拟酶的泡囊催化反应。以磷脂或亲水亲油的表面活性剂分子所提供的双分子层泡囊结构为基质,分别在其不同的区域引入活性基团或分子,赋予了泡囊新的功能,由此可实现对一些反应的进程及产物构象的控制。利用这类功能泡囊膜,已成功地模拟了水解酶、还原酶、转氨酶、生物体内的碳单元传递反应等,并为模拟光合作用提供了一个很好的模式。     

A multiscale coarse-graining method for biomolecular systems

A new approach is presented for obtaining coarse-grained (CG) force fields from fully atomistic molecular dynamics (MD) trajectories. The method is demonstrated by applying it to derive a CG model for the dimyristoylphosphatidylcholine (DMPC) lipid bilayer. The coarse-graining of the interparticle force field is accomplished by an application of a force-matching procedure to the force data obtained from an explicit atomistic MD simulation of the biomolecular system of interest. Hence, the method is termed a "multiscale" CG (MS-CG) approach in which explicit atomistic-level forces are propagated upward in scale to the coarse-grained level. The CG sites in the lipid bilayer application were associated with the centers-of-mass of atomic groups because of the simplicity in the evaluation of the forces acting on them from the atomistic data. The resulting CG lipid bilayer model is shown to accurately reproduce the structural properties of the phospholipid bilayer.     

纳米雄黄与脂质体仿生膜的相互作用研究

本工作以卵磷脂与胆固醇组成的磷脂小单层脂质体（small unilamelarvesicles,suv）作为仿生膜的简单模型,采用表面等离子共振技术（SPR）、荧光偏振、拉曼（Raman）光谱、核磁共振（NMR）及原子力显微镜（AFM）研究纳米雄黄与SUV仿生膜的相互作用,证实了磷脂是纳米雄黄作用的关键靶分子．随纳米雄黄结合,SUV仿生膜的相对粘度聃值增大,膜的流动性减小．Raman光谱数据计算表明,作用后膜的纵向有序性参数s。。及横向有序性参数Slat值增大,说明纳米雄黄的结合使磷脂膜的脂酰基链全反式构型比例上升,膜的流动性减小．由Raman光谱和引PNMR结果推测,磷脂极性头部是纳米雄黄与磷脂的主要结合位点。AFM实时观测,纳米雄黄通过在膜表面打“孔”或“洞”的方式,损坏磷脂膜．     

Coarse-grained model for phospholipid/cholesterol bilayer

We construct a coarse-grained (CG) model for dipalmitoylphosphatidylcholine (DPPC)/cholesterol bilayers and apply it to large-scale simulation studies of lipid membranes. Our CG model is a two-dimensional representation of the membrane, where the individual lipid and sterol molecules are described by pointlike particles. The effective intermolecular interactions used in the model are systematically derived from detailed atomic-scale molecular dynamics simulations using the Inverse Monte Carlo technique, which guarantees that the radial distribution properties of the CG model are consistent with those given by the corresponding atomistic system. We find that the coarse-grained model for the DPPC/cholesterol bilayer is substantially more efficient than atomistic models, providing a speedup of approximately eight orders of magnitude. The results are in favor of formation of cholesterol-rich and cholesterol-poor domains at intermediate cholesterol concentrations, in agreement with the experimental phase diagram of the system. We also explore the limits of the coarse-grained model, and discuss the general validity and applicability of the present approach.     

A simulation study on nanoscale holes generated by gold nanoparticles on negative lipid bilayers

Understanding the interactions of gold nanoparticles (AuNPs) with cellular compartments, especially cell membranes, is of fundamental importance in obtaining their control in biomedical applications. An effort is made in this paper to investigate the interactions of 2.2 nm core AuNPs with negative model bilayer membranes by coarse-grained (CG) molecular dynamics (MD) simulation. The CG model of lipid bilayer was taken from Marrink et al. ( J. Phys. Chem. B 2004, 108, 750-760 ), whereas the CG AuNPs model was developed on the basis of both atomistic MD simulations and experimental data. It was found that AuNPs functionalized with cationic ligands penetrated into the negative bilayer membranes and generated significant disruptions on bilayers. The lipids surrounding the nanoparticle were highly disordered and the bulk surface of the bilayer exhibits some defective areas. Most importantly, it is observed that a nanoscale hole can be formed and expanded spontaneously on the peripheral regions of the 20 × 20 nm bilayer. The expansion of the hole is on the time scale of hundreds of nanosceonds. The fully expanded hole had a radius of ～5.5 nm and could transport water molecules at a rate of up to ～1100 molecule/ns. However holes could not be formed on a larger bilayer (28 × 28 nm). The factors that can eliminate hole formation on the bilayer also include the decrease of cationic lignads on the AuNP, the reduction of negative lipids in the bilayer, the release of bilayer surface tension, the lowering of temperature, and the addition of a high concentration of salt. The results suggest that a hole can only be formed on living cell membranes under extreme conditions.     

A molecular dynamics simulation study of C60 fullerenes inside a dimyristoylphosphatidylcholine lipid bilayer

We have carried out atomistic molecular dynamics simulations of C60 fullerenes inside a dimyristoylphosphatidylcholine lipid bilayer and an alkane melt. Simulations reveal that the preferred position of a single C60 fullerene is about 6-7 A off of the center plane, allowing the fullerene to take advantage of strong dispersion interactions with denser regions of the bilayer. Further displacement (>8 A) of the fullerene away from the center plane results in a rapid increase in free energy likely due to distortion of the lipid head group layer. The effective interaction between fullerenes (direct interaction plus environment (bilayer)-induced interaction), measured as the potential of mean force (POMF) between two fullerenes as a function of their separation, was found to be significantly less attractive in the lipid bilayer than in an alkane melt of the same molecular weight as the lipid tails. Only part of this difference can be accounted for by the more favorable interaction of the fullerene with the relatively denser bilayer. Additionally, our POMF studies indicate that the bilayer is less able to accommodate the larger aggregated fullerene pair than isolated single fullerenes, again likely due to distortion of the bilayer structure. The implications of these effects on aggregation of fullerenes within lipid bilayer are considered.     

Impact of Strong and Weak Lipid–Protein Interactions on the Structure of a Lipid Bilayer on a Gold Electrode Surface

A lipid bilayer deposited on an electrode surface can serve as a benchmark system to investigate lipid–protein interactions in the presence of physiological electric fields. Recoverin and myelin‐associated glycoprotein (MAG) are used to study the impact of strong and weak protein–lipid interactions on the structure of model lipid bilayers, respectively. The structural changes in lipid bilayers are followed using electrochemical polarization modulation infrared reflection–absorption spectroscopy (PM IRRAS). Recoverin contains a myristoyl group that anchors in the hydrophobic part of a cell membrane. Insertion of the protein into the 1,2‐dimyristoyl‐sn‐glycero‐3‐phosphatidylcholine (DMPC)–cholesterol lipid bilayer leads to an increase in the capacitance of the lipid film adsorbed on a gold electrode surface. The stability and kinetics of the electric‐field‐driven adsorption–desorption process are not affected by the interaction with protein. Upon interaction with recoverin, the hydrophobic hydrocarbon chains become less ordered. The polar head groups are separated from each other, which allows for recoverin association in the membrane. MAG is known to interact with glycolipids present on the surface of a cell membrane. Upon probing the interaction of the DMPC–cholesterol–glycolipid bilayer with MAG a slight decrease in the capacity of the adsorbed lipid film is observed. The stability of the lipid bilayer increases towards negative potentials. At the molecular scale this interaction results in minor changes in the structure of the lipid bilayer. MAG causes small ordering in the hydrocarbon chains region and an increase in the hydration of the polar head groups. Combining an electrochemical approach with a structure‐sensitive technique, such as PM IRRAS, is a powerful tool to follow small but significant changes in the structure of a supramolecular assembly.     

糖和盐类物质对生物膜超分子结构稳定性影响的研究

用原子力显微镜(AFM)和小角X射线(SAXS)技术, 研究了NaCl、KCl、胆固醇、葡萄糖和蔗糖等与膜脂的相互作用. 研究发现它们能引起脂质膜超分子体系液晶态结构的变化. 葡萄糖和蔗糖对脂双层膜结构有稳定作用. 在NaCl溶液中制成的脂质膜, 随着NaCl浓度的增加, 它们的双层膜更稳定. 在KCl溶液中结果恰好相反. AFM研究发现液晶态脂双层膜结构与双亲性分子的结构、浓度以及介质的组分和pH等因素有关. 在1,2-反十八碳-3-磷脂酰乙醇胺(DEPE)液晶态中, 钠盐诱导形成Q²²⁹(Im3m)立方相. 油酸的含量对DEPE-PVP(聚乙烯吡咯烷酮)超分子结构也有一定的影响, 当油酸含量达到某一临界值时, 则发生从Im3m(Q²²⁹)到Pn3m(Q²²⁴)的转变. 胆固醇能促使形成Pn3m(Q²²⁴)和六角相H_II共存相. 研究结果表明, 生物膜超分子聚集体的氢键、分子van der Waals力、离子的静电力等这些弱相互作用的协同性、方向性和选择性, 可能决定着生物膜的结构和功能.     

脂双层膜表面结构与稳定性的原子力显微镜研究

用原子力显微镜研究了1,2－二油酸甘油－3－磷酸－1甘油（DOPG）脂双层膜 的表面结构与稳定性。实验结果表明,原子力显微镜的探针与脂双层膜的相互作用 导致脂双层膜表面产生一个永久的损伤。静电相互作用对脂双层膜结构和稳定性的 影响表明,在NaCl溶液中制成的脂质体,随着NaCl浓度的增加,它们的双层膜更稳 定。在低的NaCl浓度则经常被损伤,在1 mol/L NaCl溶液中制备的指双层变得更稳 定。在KCl溶液中结果恰好相反。在高的KCl浓度中经常被损伤,随着KCl浓度的降 低,它们的双层膜更稳定。葡萄糖和蔗糖对脂双层膜结构有稳定作用。     

Extension of CAVS coarse‐grained model to phospholipid membranes: The importance of electrostatics

It is evident from experiment that electrostatic potential (or dipole potential) is positive inside PC or PE lipid bilayers in the absence of ions. MARTINI coarse‐grained (CG) model, which has been widely used in simulating physical properties of lipid bilayers, fails to reproduce the positive value for the dipole potential in the membrane interior. Although the total dipole potential can be correctly described by the BMW/MARTINI model, the contribution from the ester dipoles, playing a nontrivial role in the electrostatic potential across lipid membranes, is neglected by this hybrid approach. In the ELBA CG model, the role of the ester dipoles is considered, but it is overweighed because various atomistic models have consistently shown that water is actually the leading contributor of dipole potential. Here, we present a CG approach by combining the BMW‐like water model (namely CAVS model) with the ELBA‐like lipid model proposed in this work. Our CG model was designed not only to correctly reproduce the positive values for the dipole potential inside PC and PE lipid bilayers but also to properly balance the individual contributions from the ester dipoles and water, surmounting the limitations of current CG models in the calculations of dipole potential. © 2017 Wiley Periodicals, Inc.