Non-symmetrically substituted phenoxazinones from laccase-mediated oxidative cross-coupling of aminophenols: an experimental and theoretical insight

Oxidative cross-coupling reactions of substituted o-aminophenols were catalyzed by a commercial laccase to produce non-symmetrically substituted phenoxazinones for the first time. Identification by (1)H-, (13)C- and (31)P-NMR, and by HPLC-PDA and HPLC-MS/MS of exclusively two kinds of substituted phenoxazinones out of four potential heterocyclic frameworks was confirmed by a DFT study. The redox-properties of the substrates, their relative rates of conversion and the rigid docking of selected substrates led to a revisited mechanistic pathway for phenoxazinones biosynthesis. Our suggestions concern both the first formal two-electron oxidation by laccase and the first intermolecular 1,4-conjugated addition which secures the observed regioselectivity.     

Synthesis, X-ray crystallographic analysis, and theoretical structure analysis of tetrathienylethenes designed for photo- and electrochromism

As part of an effort to develop a new chromic system that responds to both photoexcitation and electron transfer, tetrakis(2-methylthien-3-yl)ethene (3a) and its tetrakismethylthio derivative (3b) were synthesized. The results of X-ray crystallographic and theoretical analyses of these substances suggest that (1) conformers of 3 with an antiparallel arrangement of two vicinal thienyl groups will undergo photocyclization, and (2) the most stable conformer of 3 having an anti-double parallel conformation will not. These predictions were preliminarily confirmed by the results of photochemical and cyclic voltammetry studies.     

Analysis and deconvolution of dimethylnaphthalene isomers using gas chromatography vacuum ultraviolet spectroscopy and theoretical computations

An issue with most gas chromatographic detectors is their inability to deconvolve coeluting isomers. Dimethylnaphthalenes are a class of compounds that can be particularly difficult to speciate by gas chromatography – mass spectrometry analysis, because of their significant coelution and similar mass spectra. As an alternative, a vacuum ultraviolet spectroscopic detector paired with gas chromatography was used to study the systematic deconvolution of mixtures of coeluting isomers of dimethylnaphthalenes. Various ratio combinations of 75:25; 50:50; 25:75; 20:80; 10:90; 5:95; and 1:99 were prepared to test the accuracy, precision, and sensitivity of the detector for distinguishing overlapping isomers that had distinct, but very similar absorption spectra. It was found that, under reasonable injection conditions, all of the pairwise overlapping isomers tested could be deconvoluted up to nearly two orders of magnitude (up to 99:1) in relative abundance. These experimental deconvolution values were in agreement with theoretical covariance calculations performed for two of the dimethylnaphthalene isomers. Covariance calculations estimated high picogram detection limits for a minor isomer coeluting with low to mid-nanogram quantity of a more abundant isomer. Further characterization of the analytes was performed using density functional theory computations to compare theory with experimental measurements. Additionally, gas chromatography – vacuum ultraviolet spectroscopy was shown to be able to speciate dimethylnaphthalenes in jet and diesel fuel samples.     

Unusual room temperature CO(2) uptake in a fluoro-functionalized MOF: insight from Raman spectroscopy and theoretical studies

We herein report an unusual CO(2) adsorption behavior in a fluoro-functionalized MOF {[Zn(SiF(6))(pyz)(2)]·2MeOH}(n) (1) with a 1D channel system, which is made up of pyrazine and SiF(6)(2-) moieties. Surprisingly, desolvated 1 (1') adsorbs higher amounts of CO(2) at 298 K than at 195 K, which is in contrast to the usual trend. Combined Raman spectroscopic and theoretical studies reveal that slanted pyrazine rings in 1' with an angle of 17.2° with respect to the (200) Zn(ii)-Si plane at low temperature block the channel windows and thus reduce the uptake amount.     

Towards an insight on the photoluminescence of disordered CaWO4 from a joint experimental and theoretical analysis

A joint experimental and theoretical study has been carried out to rationalize for the first time the photoluminescence (PL) properties of disordered CaWO₄ (CWO) thin films. From the experimental side, thin films of CWO have been synthesized following a soft chemical processing, their structure has been confirmed by X-ray diffraction data and corresponding PL properties have been measured using the 488 nm line of an argon ion laser. Although we observe PL at room temperature for the crystalline thin films, the structurally disordered samples present much more intense emission. From the theoretical side, first principles quantum mechanical calculations, based on density functional theory at B3LYP level, have been employed to study the electronic structure of a crystalline (CWO-c) and asymmetric (CWO-a) periodic model. Electronic properties are analyzed in the light of the experimental results and their relevance in relation to the PL behavior of CWO is discussed. The symmetry breaking process on going from CWO-c to CWO-a creates localized electronic levels above the valence band and a negative charge transfer process takes place from threefold, WO₃, to fourfold, WO₄, tungsten coordinations. The correlation of both effects seems to be responsible for the PL of amorphous CWO.     

Experimental and theoretical investigation of the dispersed fluorescence spectroscopy of HC4S

A high-resolution single vibronic level emission study from the A (2)Pi(32) state of the HC(4)S radical is reported. Ground state density functional theory frequencies have been used to assign ground state vibronic levels involving three stretching modes nu(2), nu(3), and nu(5) in the region of 0-3250 cm(-1), while the frequency of nu(4) remains speculative. Tentative assignments are given for the complicated structures arising from Renner-Teller and spin-orbit interactions within the bending energy levels. From analysis of the dispersed emission spectra, Fermi resonances involving pairs of bands have been identified in the A (2)Pi(32)<--X (2)Pi(32) laser induced fluorescence spectrum.     

Insight into the drastically different triplet lifetimes of BODIPY obtained by optical/magnetic spectroscopy and theoretical computations

The triplet state lifetimes of organic chromophores are crucial for fundamental photochemistry studies as well as applications as photosensitizers in photocatalysis, photovoltaics, photodynamic therapy and photon upconversion. It is noteworthy that the triplet state lifetime of a chromophore can vary significantly for its analogues, while the exact reason was rarely studied. Herein with a few exemplars of typical BODIPY derivatives, which show triplet lifetimes varying up to 110-fold (1.4–160 μs), we found that for these derivatives with short triplet state lifetimes (ca. 1–3 μs), the electron spin polarization (ESP) pattern of the time-resolved electron paramagnetic resonance (TREPR) spectra of the triplet state is inverted at a longer delay time after laser pulse excitation, as a consequence of a strong anisotropy in the decay rates of the zero-field state sublevel of the triplet state. For the derivatives showing longer triplet state lifetimes (>50 μs), no such ESP inversion was observed. The observed fast decay of one sublevel is responsible for the short triplet state lifetime; theoretical computations indicate that it is due to a strong coupling between the T_z sublevel and the ground state mediated by the spin–orbit interaction. Another finding is that the heavy atom effect on the shortening of the triplet state lifetime is more significant for the T₁ states with lower energy. To the best of our knowledge, this is the first systematic study to rationalize the short triplet state lifetime of visible-light-harvesting organic chromophores. Our results are useful for fundamental photochemistry and the design of photosensitizers showing long-lived triplet states.

The electron spin polarization inversion and anisotropic decay of triplet substates explain the short triplet state lifetime of BODIPY derivatives.     

Water-source characterization and classification with fluorescence EEM spectroscopy: PARAFAC analysis

Water-quality protection and environmental forensics require rapid water monitoring and source identification. In this paper, parallel factor analysis (PARAFAC) of fluorescence excitation-emission matrix spectra (EEMS) was used to characterize and classify water samples from landfills, wastewater treatment plants, lakes, and rivers. The study showed that the optimal number of components was four to represent the data set. The fluorescence fingerprints for water samples from different sources were sufficiently different, so qualitative water classification could be achieved. Specifically, Component 1 was the major fluorescing centre in river waters, with characteristics consistent with humic-like fluorophores; Component 2 was the dominant fluorophore in the treated wastewaters; Component 3 was the characteristic fluorophore in landfill leachates; and Components 1, 3, and 4 existed in lake waters at comparable weight, among which Component 4 may be considered as a protein- or amino acid-like fluorophore.     

Hydrogen-bond interactions of nicotine and acetylcholine salts: a combined crystallographic, spectroscopic, thermodynamic and theoretical study

The hydrogen-bond (HB) interactions of the monocharged active forms of nicotine and acetylcholine (ACh) have been compared theoretically by using density functional theory (DFT) calculations and experimentally on the basis of crystallographic observations and the measurement of equilibrium constants in solution. The 2,4,6-trinitrophenolate (picrate) counterion was used to determine the experimental HB basicity of the cations despite its potential multisite HB acceptor properties. The preferred HB interaction site of the ammonium picrate salts was determined from a survey of crystallographic data found in the Cambridge Structural Database (CSD) and is supported by theoretical calculations. Two distinct classes of ammonium groups were characterised depending on the absence (quaternary ammonium) or presence (tertiary, secondary and primary ammoniums) of an N(+)HO hydrogen bond linking the two ions. The crystal structure of nicotinium picrate was determined and compared with that of ACh. This analysis revealed the peculiar behaviour of the ammonium moiety of nicotinic acetylcholine receptor (nAChR) ligands towards the picrate anion. Dedicated methods have been developed to separate the individual contributions of the anion and cation accepting sites to the overall HB basicity of the ion pairs measured in solution. The HB basicities of the picrate anions associated with the two different ammonium classes were determined in dichloromethane solution by using several model ion pairs with non-basic ammonium cations. The experimental and theoretical studies performed on the nicotine and ACh cations consistently show the significant HB ability of the acceptor site of nAChR agonists in their charged form. Both the greater HB basicity of the pyridinic nitrogen over the carbonyl oxygen and the greater HB acidity of the N(+)H unit relative to N(+)CH could contribute to the higher affinity for nAChRs of nicotine-like ligands relative to ACh-like ligands.     

The nature of halogen...halide synthons: theoretical and crystallographic studies

Two types of halogen...halide synthons are investigated on the basis of theoretical and crystallographic studies; the simple halogen...halide synthons and the charge assisted halogen...halide synthons. The former interactions were investigated theoretically (ab initio) by studying the energy of interaction of a halide anion with a halocarbon species as a function of Y...X- separation distance and the C-Y...X- angle in a series of complexes (R-Y...X-, R=methyl, phenyl, acetyl or pyridyl; Y=F, Cl, Br, or I; X-=F-, Cl-, Br-, or I-). The theoretical study of the latter interaction type was investigated in only one system, the [(4BP)Cl]2 dimer, (4BP=4-bromopyrdinium cation). Crystal structure determinations, to complement the latter theoretical calculations, were performed on 13 n-chloropyridinium and n-bromopyridinium halide salts (n=2-4). The theoretical and crystallographic studies indicate that these interactions are controlled by electrostatics and are characterized by linear C-Y...X- angles and separation distances less than the sum of van der Waals radius (rvdW) of the halogen atom and the ionic radii of the halide anion. The strength of these contacts from calculations varies from weak or absent, e.g., H3C-Cl...I-, to very strong, e.g., HCC-I...F- (energy of interaction ca. -153 kJ/mol). The strengths of these contacts are influenced by four factors: (a) the type of the halide anion; (b) the type of the halogen atom; (c) the hybridization of the ipso carbon; (d) the nature of the functional groups. The calculations also show that charge assisted halogen...halide synthons have a comparable strength to simple halogen...halide synthons. The nature of these contacts is explained on the basis of an electrostatic model.     

The nature of halogen...halogen synthons: crystallographic and theoretical studies

A study of the halogen...halogen contacts in organic compounds using ab initio calculations and the results of previously reported crystallographic studies show that these interactions are controlled by electrostatics. These contacts can be represented by the geometric parameters of the C--X1...X2--C moieties (where theta1=C--X1...X2 and theta2=X1...X2--C; ri=X1...X2 distance). The distributions of the contacts within the sum of van der Waals radii (rvdW) versus thetai (theta1=theta2) show a maximum at theta approximately 150 degrees for X=Cl, Br, and I. This maximum is not seen in the distribution of F...F contacts. These results are in good agreement with our ab initio calculations. The theoretical results show that the position of the maximum depends on three factors: 1) The type of halogen atom, 2) the hybridization of the ipso carbon atom, and 3) the nature of the other atoms that are bonded to the ipso carbon atom apart from the halogen atom. Calculations show that the strength of these contacts decreases in the following order: I...I>Br...Br>Cl...Cl. Their relative strengths decrease as a function of the hybridization of the ipso carbon atom in the following order: sp2>sp>sp3. Attaching an electronegative atom to the carbon atom strengthens the halogen...halogen contacts. An electrostatic model is proposed based on two assumptions: 1) The presence of a positive electrostatic end cap on the halogen atom (except for fluorine) and 2) the electronic charge is anisotropically distributed around the halogen atom.     

Analysis of N-dimensional data arrays from fluorescence spectroscopy of an intermediary sugar product

Unwanted formation of colour takes place during the production of crystalline sugar. The degree of colouration depends partly on the necessary processing conditions, e.g. heating and pH, and partly on the initial composition and condition of the sugar beets used as raw material. Reducing sugars are formed during the process. These are reactive compounds forming a variety of coloured complexes and strong precursors to further formation of colour and many of these compounds contain fluorophores. In the present work it is discussed if spectrofluorometric screening of intermediary sugar products prior to the final heating stages combined with a multi-way chemometric approach can provide information that significantly reflects the condition of the process and the beets. The model used is the N-way PCA (Principal Component Analysis) which is an exploratory model, not necessitating explicit modelling of single parameters nor any assumptions towards parameter interaction. By use of a 4-way PCA of order (3,2,3,3) satisfactory classification of 47 thick juice samples belonging to 5 factories has been obtained from a spectrofluorometric screening method. Also, a temporal trend has been found to evolve during the time of production. The investigation substantiates the use of modern models from data analysis for extracting significant information from large and complex data sets.     

Analysis of N-dimensional data arrays from fluorescence spectroscopy of an intermediary sugar product

Unwanted formation of colour takes place during the production of crystalline sugar. The degree of colouration depends partly on the necessary processing conditions, e.g. heating and pH, and partly on the initial composition and condition of the sugar beets used as raw material. Reducing sugars are formed during the process. These are reactive compounds forming a variety of coloured complexes and strong precursors to further formation of colour and many of these compounds contain fluorophores. In the present work it is discussed if spectrofluorometric screening of intermediary sugar products prior to the final heating stages combined with a multi-way chemometric approach can provide information that significantly reflects the condition of the process and the beets. The model used is the N-way PCA (Principal Component Analysis) which is an exploratory model, not necessitating explicit modelling of single parameters nor any assumptions towards parameter interaction. By use of a 4-way PCA of order (3,2,3,3) satisfactory classification of 47 thick juice samples belonging to 5 factories has been obtained from a spectrofluorometric screening method. Also, a temporal trend has been found to evolve during the time of production. The investigation substantiates the use of modern models from data analysis for extracting significant information from large and complex data sets. Received: 13 January 1997 / Revised: 18 March 1997 / Accepted: 25 March 1997     

Selective hydrolysis of 2,4-diaminopyrimidine systems: a theoretical and experimental insight into an old rule.

Hydrolysis of the amino groups in condensed 2,4-diaminopyrimidine systems (1) has been used as a common method for the synthesis of oxo-substituted pyrimidines. In particular, the treatment with 6 M HCl usually yields exclusively the 2-amino-4-oxopyrimidine isomer (2). During our work, we found that the hydrolysis of the amino groups present in some condensed 2,4-diaminopyrimidine systems unexpectedly afforded exclusively the 4-amino-2-oxopyrimidine isomer (3). In this paper, we present the experimental work and ab initio calculations carried out to understand this discrepancy. As a part of such study, eight compounds containing a 2,4-diaminopyrimidine moiety were calculated in gas phase and in aqueous solution, and some acid hydrolyses were reexamined. Results showed that the presence of an electron-donating nitrogen linked to C6 of the 2,4-diaminopyrimidine ring changes the preferred hydrolysis site to yield the 4-amino-2-oxopyrimidine isomer.     

Two chain-shaped (H2O)4 clusters: crystallographic,thermal and theoretical studies

A chain-shaped (H₂O)₄ cluster A is self-assembled in a metal phosphonate compound, [Al(phen)(AEDPH₂)(AEDPH₃)] · 4H₂O (1) (AEDPH₄ = 1-aminoethylidenediphosphonic acid, phen = 1,10-phenanthroline). This water cluster, and another chain-shaped (H₂O)₄ cluster B which exists in the previously reported compound [Zn(phen)(AEDPH₂)₂] · 4H₂O (2), are investigated by X-ray crystallographic, thermal gravimetric analysis (TGA) and theoretical calculations. Both A and B collapse to ring-shaped (H₂O)₄ cluster C after geometry optimizations with 6-311+G(d, p) basis set at Hartree-Fock theory as well as density functional theory. Energy calculations reveal the stability is C > B > A, which is consistent with experiment results.      

Valence-band electronic structure of iron phthalocyanine: an experimental and theoretical photoelectron spectroscopy study

The electronic structure of iron phthalocyanine (FePc) in the valence region was examined within a joint theoretical-experimental collaboration. Particular emphasis was placed on the determination of the energy position of the Fe 3d levels in proximity of the highest occupied molecular orbital (HOMO). Photoelectron spectroscopy (PES) measurements were performed on FePc in gas phase at several photon energies in the interval between 21 and 150 eV. Significant variations of the relative intensities were observed, indicating a different elemental and atomic orbital composition of the highest lying spectral features. The electronic structure of a single FePc molecule was first computed by quantum chemical calculations by means of density functional theory (DFT). The hybrid Becke 3-parameter, Lee, Yang and Parr (B3LYP) functional and the semilocal 1996 functional of Perdew, Burke and Ernzerhof (PBE) of the generalized gradient approximation (GGA-)type, exchange-correlation functionals were used. The DFT/B3LYP calculations find that the HOMO is a doubly occupied π-type orbital formed by the carbon 2p electrons, and the HOMO-1 is a mixing of carbon 2p and iron 3d electrons. In contrast, the DFT/PBE calculations find an iron 3d contribution in the HOMO. The experimental photoelectron spectra of the valence band taken at different energies were simulated by means of the Gelius model, taking into account the atomic subshell photoionization cross sections. Moreover, calculations of the electronic structure of FePc using the GGA+U method were performed, where the strong correlations of the Fe 3d electronic states were incorporated through the Hubbard model. Through a comparison with our quantum chemical calculations we find that the best agreement with the experimental results is obtained for a U(eff) value of 5 eV.     

Substrate specificity of Rv3378c, an enzyme from Mycobacterium tuberculosis, and the inhibitory activity of the bicyclic diterpenoids against macrophage phagocytosis

The Rv3378c gene product from Mycobacterium tuberculosis encodes a diterpene synthase to produce tuberculosinol (3), 13R-isotuberculosinol (4a), and 13S-isotuberculosinol (4b) from tuberculosinyl diphosphate (2). The product distribution ratios are 1 : 1 for 3 to 4 and 1 : 3 for 4a to 4b. The substrate specificity of the Rv3378c-encoded enzyme was examined. The 3 labdadienyl diphosphates, copalyl diphosphate (CDP) (7), ent-CDP (8), and syn-CDP (9), underwent the conversion reaction, with good yields (67-78%). Copalol (23) and manool (24) were produced from 7, ent-copalol (25) and ent-manool (26) from 8, and syn-copalol (27) and vitexifolin A (28) from 9. The ratio of 23 to 24 was 40 : 27, that of 25:26 was 22 : 50, and that of 27:28 was 16 : 62. Analysis on a GC-MS chromatograph equipped with a chiral column revealed that 24, 26, and 28 consisted of a mixture of 13R- (a) and 13S-stereoisomers (b) in the following ratio: ca. 1 : 1 for 24a to 24b, ca. 1 : 5 for 26a to 26b, and ca. 1 : 19 for 28a to 28b. The structures of these products indicate that the reactions of the 3 CDPs proceeded in the same fashion as that of 2. This is the first report on the enzymatic synthesis of natural diterpenes manool, ent-manool, and vitexifolin A. Both Rv3377c and Rv3378c genes are found in virulent Mycobacterium species, but not in avirulent species. We found that 3 and 4 inhibited the phagocytosis of opsonized zymosan particles by human macrophage-like cells. Interestingly, the inhibitory activity was synergistically increased by the coexistence of 3 and 4b. Other labdane-related diterpenes, 13-16 and 23-28, had little or no inhibitory activity. This synergistic inhibition by 3 and 4 may provide further advantage to the impairment of phagocyte function, which might contribute to pathogenicity of M. tuberculosis.     

Radicals derived from uric acid and its methyl derivatives in aqueous solution: an EPR spectroscopy and theoretical study

The oxidation of uric and of four N-methyluric acids in aqueous solution was studied by EPR spectroscopy. The primary oxidising radicals react with uric acid and its methyl derivatives by formal hydrogen abstraction from an NH group to yield radical-anions in neutral or moderately basic solutions and the respective radical-dianions in basic media. In the case of uric acid, the radical-trianion was detected at very high pH. The pKa values of the radical-anions were determined to be in the range 9.5-11.2. The pKa of uric acid radical-dianion was estimated to be 13.0. DFT calculations were performed to assign the hyperfine coupling constants and to determine the predominant tautomeric structure of the radicals. The uric acid radical-anion exists as the N1H, N9H tautomer, while in the radical-dianion the N1H structure is the most stable one. The intrinsic acidity of the NH protons both in uric acid and in its radicals seems to follow the order N1H < N9H < N3H.     

Sensitive and selective spectrochemical analysis of metallic samples: the combination of laser-induced breakdown spectroscopy and laser-induced fluorescence spectroscopy

In order to improve on analytical selectivity and sensitivity, the technique of laser-induced fluorescence spectroscopy (LIFS) was combined with laser-induced breakdown spectroscopy (LIBS). The main thrust of this investigation was to address analytical scenarios in which the measurement site may be difficult to access. Hence, a remote LIBS+LIFS arrangement was set up, and the experiments were carried out on samples surrounded by air at atmospheric pressure, rather than in a controlled buffer gas environment at reduced pressure. Representative for proof of principle, the detection of aluminium, chromium, iron and silicon at trace level concentrations was pursued. These elements are of importance in numerous chemical, medical and industrial applications, and they exhibit suitable resonance transitions, accessible by radiation from a pulsed Ti:sapphire laser system (its 2nd and 3rd harmonic outputs). All investigated elements have an energy level structure in which the laser-excited level is a member of a group of closely-spaced energy levels; thus, this allowed for easy off-resonant fluorescence detection (collisional energy transfer processes). Since numerous of the relevant transition wavelengths are within a narrow spectral interval, this opens the possibility for multi-element analysis; this was demonstrated here for Cr and Fe which were accessed by rapidly changing the tuneable laser wavelength.     

New insight into relaxation dynamics of an epoxy/hydroxy functionalized polybutadiene from dielectric and mechanical spectroscopy studies

Dielectric and mechanical spectroscopy methods have been employed to describe the temperature dependencies of the segmental and macromolecular relaxation rates in epoxy/hydroxy functionalized polybutadiene. Dielectric studies on the dynamics of segments of the polymer as well as the mobility of small ions trapped in the system have been carried out both as a function of temperature and pressure under isobaric and isothermal conditions, respectively.