π-facial interactions between Cl and [S4N3]. X-ray crystal structure of [S4N3]Cl

The X-ray structure of [S₄N₃]Cl reveals three independent molecules, which all display π-facial interactions between the Cl⁻ and the pseudo-aromatic [S₄N₃]⁺ rings to produce a structure containing “inverse sandwich” systems.     

Hydrogenmaleato bridged supramolecular double chains via π–π stacking interactions: syntheses, crystal structures and magnetic properties of ∞[Cu(phen)X(HL)2/2] with X=Cl (1), NO3 (2) and H2L=maleic acid

Two novel hydrogen maleato (HL) bridged Cu(II) complexes _∞¹[Cu(phen)Cl(HL)_2/2] 1 and _∞¹[Cu(phen)(NO₃)(HL)_2/2] 2 were obtained from reactions of 1,10-phenanthroline, maleic acid with CuCl₂·2H₂O and Cu(NO₃)₂·3H₂O, respectively, in CH₃OH/H₂O (1:1 v/v) at pH=2.0 and the crystal structures were determined by single crystal X-ray diffraction methods. Both complexes crystallize isostructurally in the monoclinic space group P2₁/n with cell dimensions: 1 a=8.639(2) Å, b=15.614(3) Å, c=11.326(2) Å, β=94.67(3)°, Z=4, D_calc=1.720 g/cm³ and 2 a=8.544(1) Å, b=15.517(2) Å, c=12.160(1) Å, β=90.84(8)°, Z=4, D_calc=1.734 g/cm³. In both complexes, the square pyramidally coordinated Cu atoms are bridged by hydrogen maleato ligands into 1D chains with the coordinating phen ligands parallel on one side. Interdigitation of the chelating phen ligands of two neighbouring chains via π–π stacking interactions forms supramolecular double chains, which are then arranged in the crystal structures according to pseudo 1D close packing patterns. Both complexes exhibit similar paramagnetic behavior obeying Curie–Weiss laws χ_m(T−θ)=0.414 cm³ mol⁻¹ K with the Weiss constants θ=−1.45, −1.0 K for 1 and 2, respectively.     

Manganese(II) complexes of 3,6,9-trioxaundecanedioic acid (3,6,9-tddaH2): X-ray crystal structures of [Mn(3,6,9-tdda) (H2O)2]·2H2O and {[Mn(3,6,9-tdda)(phen)2·3H2O]·EtOH}n

3,6,9-trioxaundecanedioic acid (3,6,9-tddaH₂) reacts with Mn(CH₃CO₂)₂·4H₂O in ethanol to give [Mn(3,6,9-tdda)]·H₂O (1). Recrystallization of 1 from methanol gives crystals of [Mn(3,6,9-tdda) (H₂O)₂]·2H₂O (2). Complex 1 reacts with an ethanolic solution of 1,10-phenanthroline (phen) to give {[Mn(3,6,9-tdda)(phen)₂]·3H₂O·EtOH}_n (3). All of the complexes are extremely water soluble. Complexes 2 and 3 were structurally characterised. The manganese(II) ion in 2 is seven coordinate, with an approximately pentagonal bipyramidal O₇ coordination sphere. The axial donors are water molecules and the pentagonal plane is occupied by the diacid, acting as a pentadentate ligand through the three ethereal oxygens and one oxygen atom from each of the carboxylate functions. In complex 3 the manganese(II) ion is six-coordinate, being bound to two bidentate phenanthroline ligands and to the carboxylate oxygen atoms from two symmetry related diacids which are coordinated in a cis fashion. The structure consists of polymeric chains, with diacid ligands bridging the manganese ions. There is π-π stacking of pairs of phenanthroline ligands on adjacent chains, running along both the z and y directions.     

The peptide NCbz‐Val‐Tyr‐OMe and aromatic π–π interactions

The peptide N‐benzyloxycarbonyl‐L‐valyl‐L‐tyrosine methyl ester or NCbz‐Val‐Tyr‐OMe (where NCbz is N‐benzyloxycarbonyl and OMe indicates the methyl ester), C₂₃H₂₈N₂O₆, has an extended backbone conformation. The aromatic rings of the Tyr residue and the NCbz group are involved in various attractive intra‐ and intermolecular aromatic π–π interactions which stabilize the conformation and packing in the crystal structure, in addition to N—H...O and O—H...O hydrogen bonds. The aromatic π–π interactions include parallel‐displaced, perpendicular T‐shaped, perpendicular L‐shaped and inclined orientations.     

Synthesis and Crystal Structure of a [Mo8O26]4– Cluster Derivative with 4‐MePyH+. First β‐Octamolybdate Derivative with π–π Stacking

Dioxobis(pyridine‐2‐thiolate‐N, S)molybdenum(VI) (MoO₂(Py‐S)₂), reacts with of 4‐methylpyridine (4‐MePy) in acetonitrile, by slow diffusion, to afford the title compound. This has been characterized by elemental analysis, IR and ¹H NMR spectroscopy. The X‐ray single crystal structure of the complex is described. Structural studies reveal that the molecular structure consists of a β‐Mo₈O₂₆ polyanion with eight MoO₆ distorted edge‐shared octahedra with short terminal Mo–O bonds (1.692–1.714 Å), bonds of intermediate length (1.887–1.999 Å) and long bonds (2.150–2.473 Å). Two different types of hydrogen bonds have been found: N–H···O (2.800–3.075 Å) and C–H···O (3.095–3.316 Å). The presence of π–π stacking interactions and strong hydrogen bonds are presumably responsible for the special disposition of the pyridinic rings around the polyanion cluster.     

Study on the Cation-π Interactions between Ammonium Ion and Aromatic π Systems

The nature and strength of the cation-π interactions between NH4^＋ and toluene, p-cresol, or Me-indole were studied in terms of the topological properties of molecular charge density and binding energy decomposition. The results display that the diversity in the distribution pattern of bond and cage critical points reflects the profound influence of the number and nature of substituent on the electron density of the aromatic rings. On the other hand, the energy decomposition shows that dispersion and repulsive exchange forces play an important role in the organic cation （NH4^＋）-π interaction, although the electrostatic and induction forces dominate the interaction. In addition, it is intriguing that there is an excellent correlation between the electrostatic energy and ellipticity at the bond critical point of the aromatic π systems, which would be helpful to further understand the electrostatic interaction in the cation-π complexes.     

Competition between π–π stacking and hydrogen bonding in (1:2) picrates of 1,5-diamino-3-oxapentane, 1,8-diamino-3,6-dioxaoctane and 1,5-diamino-3-azapentane—solid state studies

Crystallographic studies of (2:1) salts of picric acid with 1,5-diamino-3-oxapentane (1OPICR), 1,8-diamino-3,6-dioxaoctane (2OPICR) and 1,5-diamino-3-azapentane (1NPICR) showed significant conformational change of the picrate ion due to numerous electrostatic, H-bonding and π–π stacking interactions present in the crystal lattice. In particular, intermolecular N–HO H-bonds were found to cause significant twisting of the o-NO₂ groups from the plane of the benzene ring, whereas overlapping of the picrate ions due to electrostatic interactions and π–π stacking caused flattening of the molecule. Analysis of the geometry of 74 picrate ions found in the Cambridge Crystallographic Database, in their various crystallochemical environments, showed that competition between essentially weak but numerous intermolecular interactions of different types led to systematic changes in geometric parameters within the picrate ion. In particular, relations found between the C1–C2–N–O (C1–C6–N–O) torsion angle and the endocyclic C1–C2–C3 (C1–C6–C5) valence angle can be explained on the basis of competition between resonance effects of the o-NO₂ group and π–π stacking.     

Reactivity of oxo-rhenium precursor trans-ReOCl3(OPPh3)(SMe2) with diaza heterocyclic congeners: Synthesis and spectroscopic characterization of mono and dinuclear compounds

The treatment of ReOCl₃(OPPh₃)(SMe₂) with an appropriate amount of [1,3]- and [1,4]-diaza heterocyclic ligands N  N (were N  N = pyrimidine (pym) and pyrazine (pyz)) in boiling acetonitrile under different reaction conditions yielded either the mononuclear ReOCl₃(OPPh₃)(pym) (1), ReOCl₃(OPPh₃)(pyz) (2) or dinuclear compounds [ReOCl₃(OPPh₃)]₂(μ-pym) (3), [ReOCl₃(OPPh₃)]₂(μ-pyz) (4). The new complexes were characterized in solution by means of NMR, IR, FIR, and UV–Vis spectroscopic methods. The molecular and crystal structures of 1, 3 and 4 were also determined by X-ray crystallography. All complexes adopt distorted octahedral geometries, with similar donor atoms arrangement, were axial positions are taken by terminal oxygen and triphenylphosphine oxide molecules. The equatorial planes are occupied by three chloride ligands and one nitrogen atom of the diaza ligand. The dinuclear complexes 3 and 4 comprise two equivalent six-coordinated monomeric units. Two halves of the dimer molecule are rotated about the Re–N  N–Re fragment: thus, an N-heterocyclic ring is stacked with two adjacent phenyl rings belonging to two triphenylphosphine oxide ligands. The preliminary results concerning the reactivity of the dimeric complexes point to their relative inertness in attempted further substitution towards synthesis of polynuclear complexes.     

Description of the S1(ππ*) state and the reinterpretation of the (1+1) REMPI spectra of N-methylpyrrole as based on the ab intio calculation: a computational spectroscopy

The ab intio calculation was performed to establish the assignment of the title spectra by such as searching for stationary points belonging to lower excited states. The lowest excited state was confirmed to be of ππ* type with an A″ symmetry of a molecular point group C_s (against the previous assumption of πΣ* type) trapped in deep potential minima at the nonplanar staggered conformation (also against the current belief on the involvement of internal rotation). Thus, lower ‘vibrational’ levels in the S₁ state were shown to be tunnel-split levels with various symmetry species for a molecular symmetry group G₁₂. Based on this finding, the spectral data as reported by Philis [Chem. Phys. Lett. 353 (2002) 84] were reassigned while applying the formalism as will be presented in Appendix A.     

Substituent effects on noncovalent halogen/π interactions: Theoretical study

Noncovalent halogen/π interactions of FCl with substituted benzenes have been investigated using ab initio calculations. It was shown that the predicted maximum interaction energy gap between the substituted and unsubstituted systems amounts to 1.14 kcal/mol, and therefore substituents on benzene have a pronounced effect on the strength of halogen/π interactions. While the presence of electron‐donating groups (NH₂, CH₃, and OH) on benzene enhances the interaction energy appreciably, an opposite effect is observed for electron‐accepting groups (NO₂, CN, Br, Cl, and F). The large gain of the attraction by electron correlation illustrates that the stabilities of the systems considered arise primarily from the dispersion interaction. Beside the dispersion interaction, the charge‐transfer interaction also plays an important role in halogen/π interactions, as a charge density analysis suggested. To provide more insight into the nature of halogen/π interactions, topological analysis of the electron density distribution and properties of bond critical points were determined in terms of the atoms in molecules (AIM) theory. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

The tropolone–isobutylamine complex: a hydrogen‐bonded troponoid without dominant π–π interactions

Tropolone long has served as a model system for unraveling the ubiquitous phenomena of proton transfer and hydrogen bonding. This molecule, which juxtaposes ketonic, hydroxylic, and aromatic functionalities in a framework of minimal complexity, also has provided a versatile platform for investigating the synergism among competing intermolecular forces, including those generated by hydrogen bonding and aryl coupling. Small members of the troponoid family typically produce crystals that are stabilized strongly by pervasive π–π, C—H…π, or ion–π interactions. The organic salt (TrOH·iBA) formed by a facile proton‐transfer reaction between tropolone (TrOH) and isobutylamine (iBA), namely isobutylammonium 7‐oxocyclohepta‐1,3,5‐trien‐1‐olate, C₄H₁₂N⁺·C₇H₅O₂⁻, has been investigated by X‐ray crystallography, with complementary quantum‐chemical and statistical‐database analyses serving to elucidate the nature of attendant intermolecular interactions and their synergistic effects upon lattice‐packing phenomena. The crystal structure deduced from low‐temperature diffraction measurements displays extensive hydrogen‐bonding networks, yet shows little evidence of the aryl forces (viz. π–π, C—H…π, and ion–π interactions) that typically dominate this class of compounds. Density functional calculations performed with and without the imposition of periodic boundary conditions (the latter entailing isolated subunits) documented the specificity and directionality of noncovalent interactions occurring between the proton‐donating and proton‐accepting sites of TrOH and iBA, as well as the absence of aromatic coupling mediated by the seven‐membered ring of TrOH. A statistical comparison of the structural parameters extracted for key hydrogen‐bond linkages to those reported for 44 previously known crystals that support similar binding motifs revealed TrOH·iBA to possess the shortest donor–acceptor distances of any troponoid‐based complex, combined with unambiguous signatures of enhanced proton‐delocalization processes that putatively stabilize the corresponding crystalline lattice and facilitate its surprisingly rapid formation under ambient conditions.     

[Na(DB18-C-6)(H2O)2][Na(DB18-C-6)(SCN)2]：Two-Di-mensional Network Complex Assembled by π-π Stacking Interactios,Hydrogen Bonds and Electrostatic Interactions

A novel two‐dimensional network dibenzo‐18‐crown‐6 (DB18‐C6) complex: [Na (DB18‐C‐6) (H₂O)₂] [Na (DB18‐C‐6) (SCN)₂] has been isolated and characterized by elemental, IR and X‐ray diffraction analysis. The crystal structure belongs to monoclinic, space group P2₁/c with cell dimensions a = 1.06178(7), b = 1.40243(8), c = 3.03496(19) nm, β = 90.4220(10)°, V = 4.5292(5) nm³, Z=4, D_calcd =1.351 g/ cm³, F(000) = 1936, R₁ = 0.0369, wR₂ = 0.0821. The most interesting feature in this structure is that complex cation and complex anion form a two‐dimensional network via τ‐τ stacking interactions, hydrogen bonds and electrostatic interactions.     

Additivity of electron correlation energy and the ab initio MO calculation of (0–0) S1←S0 transition energies: polychlorinated dibenzofurans

The energies of the S₀ and S₁ states of polychlorinated dibenzofurans (PCDFs) were calculated using the Hartree–Fock (HF) and configuration interaction-singles (CIS) methods. We can obtain the (0–0) transition energies of PCDFs with good accuracy if the energies calculated using the HF and CIS methods are adjusted to take the electron correlation energy into account. The correlation energy of the S₀ state was calculated using the Møller–Plesset correlation correction truncated at the second order (MP2), and that of the S₁ state was determined using experimental data. The correlation energies for both S₀ and S₁ states were expressed as the sum of the contributions arising from dibenzofuran (DF) and substituted chlorine atoms. The energy of the ground state calculated using the additivity approximation was in good agreement with the energy given directly by the MP2 method. The (0–0) S₁←S₀ transition energies corrected for electron correlation energy agreed well with the available experimental data. The approach proposed in this paper may be useful for the estimation of the electronic transition energy for large aromatic molecules.     

Azamacrocyclic stabilization of SbCl2: synthesis and crystal structure of [SbCl2(Me3[9]aneN3)][SbCl6] showing explicit Sb lone-pair stereochemical activity. Me3[9]aneN3 = 1,4,7-trimethyl-1,4,7-triazacyclononane

The reaction of antimony(III)chloride and antimony(V)chloride in acetonitrile in the presence of the azamacrocyclic ligand Me₃[9]aneN₃ provides the golden-yellow ionic compound [SbCl₂(Me₃[9]aneN₃][SbCl₆]. X-ray structural characterization reveals the cation as five-coordinate with Ψ-octahedral metal geometry featuring a cis-SbCl₂⁺ unit coordinated to the three donor nitrogen atoms of the ligand (fac) and a stereochemically active lone pair occupying the sixth site in a trans-position to a ring nitrogen atom.     

Ab initio study of the π–π interactions between CO2 and benzene,pyridine, and pyrrole

The π–π interactions between CO₂ and three aromatic molecules, namely benzene (C₆H₆), pyridine (C₅H₅N), and pyrrole (C₄H₅N), which represent common functional groups in metal‐organic/zeoliticimidazolate framework materials, were characterized using high‐level ab initio methods. The coupled‐cluster with single and double excitations and perturbative treatment of triple excitations (CCSD(T)) method with a complete basis set (CBS) was used to calibrate Hartree–Fock, density functional theory, and second‐order M?ller–Plesset (MP2) with resolution of the identity approximation calculations. Results at the MP2/def2‐QZVPP level showed the smallest deviations (only about 1 kJ/mol) compared with those at the CCSD(T)/CBS level of theory. The strength of π–π binding energies (BEs) followed the order C₄H₅N > C₆H₆ ～ C₅H₅N and was roughly correlated with the aromaticity and the charge transfer between CO₂ and aromatic molecule in clusters. Compared with hydrogen‐bond or electron donor–acceptor interactions observed during BE calculations at the MP2/def2‐QZVPP level of theory, π–π interactions significantly contribute to the total interactions between CO₂ and aromatic molecules. © 2013 Wiley Periodicals, Inc.     

Theoretical study of metal ligand aromatic cation–π interactions of [Co(NH3)6]3+ with benzene

In this work, density functional theory calculations on geometries and energies of all possible conformers of the [Co(NH₃)₆]³⁺–C₆H₆ cation–π complex are described. The calculations show that stationary points are several η₂ and the η₃ structures. The most stable η₃ structure has bonding energy, after basis set superposition error correction, of 32.18 kcal/mol. The energies of η₃ structures are similar; also, the energies of η₂ structures are similar while the difference in energy between η₃ and the η₂ structures is about 2 kcal/mol. This indicates a possibility for various orientations of the benzene ring with respect to interacting ligands in the case of metal ligand aromatic cation–π (MLACπ) interactions and a possibility for the existence of these interactions in different molecular systems. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002