Au adatoms in self-assembly of benzenethiol on the Au(111) surface

Self-assembly of benzenethiol at low coverage on Au(111) was studied using low-temperature scanning tunneling microscopy. Phenylthiolate species (PhS), formed by thermal dehydrogenation of the parent PhSH molecule, was found to self-assemble into surface-bonded complexes with gold adatoms. Each complex involves two PhS species and one gold adatom. The PhS species form either cis- or trans-geometry relative to each other. At a higher coverage, the complexes coalesce, most likely due to the formation of weak C-H...S hydrogen bonds facilitated by the spatial arrangement of the PhS groups. Our findings thus establish that the self-assembly of arenethiols on the Au(111) surface is driven by gold adatom chemistry, which has recently been found to be the key ingredient in the self-assembly of alkanethiols on gold.     

Functionalization, self-assembly, and photoswitching quenching for azobenzene derivatives adsorbed on Au(111)

We have used scanning tunneling microscopy to investigate the structure and photoswitching behavior of azobenzene molecules functionalized with bulky spacer groups and adsorbed onto Au(111). We find that positioning tert-butyl "legs" in a canted arrangement on the azobenzene phenyl rings quenches photoisomerizability of the molecule on Au(111). Addition of cyano groups at the para positions changes the molecular self-assembly significantly, but does not alter the quenched photoisomerizability. This behavior likely arises from a combination of molecule-surface interactions, molecule-molecule interactions, and alteration of azobenzene electronic structure resulting from the position-specific addition of tert-butyl groups.     

Adsorptive behavior of dimethylglyoxime on Au(111)

Dimethylglyoxime (DMG) adsorbed on Au(111) was investigated using electrochemical scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). STM experiments revealed three different structures of adsorbed DMG at open circuit potential (~0.07 V versus Ag/AgCl): (2√3×2√3)R30°-α, (2√3×4√3)R30°-β, and (2√3×4√3)R30°-γ. The coverage of adsorbed DMG obtained using XPS was 0.33. A combination of structural and quantitative information identified the adsorbed DMG as an anionic tetramer, held together by intermolecular hydrogen bonding and arrayed in three ordered patterns. Domains of adsorbed DMG underwent phase transitions between the observed structures, most likely due to the influence of the STM tip. However, a significant correlation between the observed structures and the imaging conditions was not found. The ordered layers existed only at open circuit potential as evidenced by their disappearance when the potential was shifted to 0.2 or -0.15 V. The ordered layers were also removed by immersion in a solution of Ni(2+), implying that the adsorbed DMG was converted to a soluble dimer complex with the Ni(2+) ion. This particular observation is discussed in terms of the rigidity of the organic network.     

TNT adsorption on Au(111): electrochemistry and adlayer structure

Electrochemistry and adlayer structure of trinitrotoluene (TNT) on an Au(111) electrode were investigated using cyclic voltammetry and in situ electrochemical scanning tunneling microscopy (ECSTM).     

Nanografting versus solution self-assembly of alpha,omega-alkanedithiols on Au(111) investigated by AFM

The solution self-assembly of alpha,omega-alkanedithiols onto Au(111) was investigated using atomic force microscopy (AFM). A heterogeneous surface morphology is apparent for 1,8-octanedithiol and for 1,9-nonanedithiol self-assembled monolayers (SAMs) prepared by solution immersion as compared to methyl-terminated n-alkanethiols. Local views from AFM images reveal a layer of mixed molecular orientations for alpha,omega-alkanedithiols, which evidence surface structures with heights corresponding to both lying-down and standing-up orientations. For dithiol SAMs prepared by solution self-assembly, the majority of alpha,omega-alkanedithiol molecules chemisorb with both thiol end groups bound to the Au(111) surface with the backbone of the alkane chain aligned parallel to the surface. However, AFM images disclose that there are also islands of standing molecules scattered throughout the surface. To measure the thickness of alpha,omega-alkanedithiol SAMs with angstrom sensitivity, methyl-terminated n-alkanethiols with known dimensions were used as molecular rulers. Under conditions of spatially constrained self-assembly, nanopatterns of alpha,omega-alkanedithiols written by nanografting formed monolayers with heights corresponding to an upright configuration.     

Novel cyanoterphenyl self-assembly monolayers on Au(111) studied by ellipsometry, x-ray photoelectron spectroscopy, and vibrational spectroscopies

The self-assembled monolayers (SAMs) of two asymmetric disulfides derivatives (namely, LC1 and LC2) were prepared on Au(111). The disulfides contain a pure alkyl chain and an alkyl chain terminated by a cyanoterphenyl group. LC1 and LC2 differ by the way the cyanoterphenyl group is attached onto the alkyl chain: it is expected to be aligned with the alkyl chain in the case of LC1 and perpendicular to it in the case of LC2 (T shape). The consequences in terms of surface coverage, chemical composition, and molecular conformation of the two SAMs are studied using ellipsometry, x-ray photoelectron spectroscopy (XPS), reflection absorption infrared spectroscopy (RAIRS), and broadband femtosecond sum-frequency generation (SFG). A model of coverage and tilt angle based on ellipsometry and XPS results shows that the SAM "manages" the large size of the terphenyl group by lowering the terphenyl containing chain coverage and by increasing the tilt. In the case of LC2, the disulfide breaks during molecular assembly, less terphenyl chains adsorb than pure alkyl chains, and the overall chain coverage is smaller than for LC1. RAIRS and SFG results show that these differences in surface coverage correspond to a drastically different orientation of the terphenyl axis, which lies nearly parallel to the surface for LC2, while it is tilted by approximately 28 degrees for LC1. This shows that the terphenyl group takes much more space on the surface in the case of LC2 and explains why the terphenyl coverage is found smaller for LC2. The anomalous SFG relative intensities observed in the region of CH stretch between CH2 and CH3 modes, and symmetric and antisymmetric modes, show that the chains are not in the fully stretched, all-trans conformation, LC2 being probably more distorted than LC1. These distorsions allow the molecules to occupy the space available below the large terphenyl group. The relative intensities of symmetric and antisymmetric modes are discussed qualitatively for some typical molecular conformations and orientations of the alkyl chain.     

Hierarchical chiral framework based on a rigid adamantane tripod on Au(111)

We have investigated the tripod-shaped bromo adamantane trithiol (BATT) molecule on Au(111) using scanning tunneling microscopy (STM) at 4.7 K. Adsorption of BATT leads to formation of highly ordered self-assembled monolayers (SAMs) with three-point contacts on Au(111). The structure of these SAMs has been found to have a two-tiered hierarchical chiral organization. The self-assembly of achiral monomers produces chiral trimers, which then act as the building blocks for chiral hexagonal supermolecules. SAMs begin to form from the racemic mixture of assembled molecules in ribbon-shaped islands, followed by the transformation to enantiomeric domains when SAM layers develop two-dimensionally across hcp domains. Such a chiral phase transition at the two-dimensional domain can arise from a subtle balance between molecule-substrate and intermolecular interactions. Two structural factors, the S atom (stabilization) and the methylene groups (chirality) located just above the S atom, induce the chiral ordering of BATT on Au(111).     

Thiol with an unusual adsorption-desorption behavior: 6-mercaptopurine on Au(111)

A multitechnique study of 6-mercaptopurine (6MP) adsorption on Au(111) is presented. The molecule adsorbs on Au(111), originating short-range ordered domains and irregular nanosized aggregates with a total surface coverage by chemisorbed species smaller than those found for alkanethiol SAMs, as derived from scanning tunneling microscopy (STM) and electrochemical results. X-ray photoelectron spectroscopy (XPS) results show the presence of a thiolate bond, whereas density functional theory (DFT) data indicate strong chemisorption via a S-Au bond and additional binding to the surface via a N-Au bond. From DFT data, the positive charge on the Au topmost surface atoms is markedly smaller than that found for Au atoms in alkanethiolate SAMs. The adsorption of 6MP originates Au atom removal from step edges but no vacancy island formation at (111) terraces. The small coverage of Au islands after 6MP desorption strongly suggests the presence of only a small population of Au adatom-thiolate complexes. We propose that the absence of the Au-S interface reconstruction results from the lack of significant repulsive forces acting at the Au surface atoms.     

SAMs of shape-persistent macrocycles: structure and binding on HOPG and Au(111)

Self-assembled monolayers of shape-persistent macrocycles have been adsorbed on highly oriented pyrolytic graphite and Au(111) substrates. Their structure and binding characteristics have been investigated by scanning tunneling microscopy, X-ray photoelectron spectroscopy, and ultraviolet photoelectron spectroscopy experiments. Special functionalization of the macrocycles for the first time has enabled their self-assembling and binding on a metal substrate and opened a new route for new functional nanostructures.     

An STM study on nonionic fluorosurfactant zonyl FSN self-assembly on Au(111): large domains, few defects, and good stability

Nonionic Fluorosurfactant Zonyl FSN self-assembly on Au(111) is investigated with scanning tunneling microscopy under ambient conditions. STM reveals that the FSN forms SAMs on Au(l11) with very large domain size and almost no defects. A (mean square root of 3 x mean square root of 3)R3 degree arrangement of the FSN SAM on Au(111) is observed. The SAMs show excellent chemical stability and last for at least a month in atmospheric conditions. The structure and stability of the FSN SAMs are compared with those of alkanethiols SAMs. It is expected that FSN may serve as a new kind of molecule to form SAMs for surface modification, which would benefit wider applications for various purposes.     

Hierarchical self-assembly of designed 2 x 2-alpha-helix bundle proteins on Au(111) surfaces

Self-assembled monolayers of biomolecules on atomically planar surfaces offer the prospect of complex combinations of controlled properties, e.g., for bioelectronics. We have prepared a novel hemi-4-alpha-helix bundle protein by attaching two alpha-helical peptides to a cyclo-dithiothreitol (cyclo-DTT) template. The protein was de novo designed to self-assemble in solution to form a 4-alpha-helix bundle, whereas the disulfide moiety enables the formation of a self-assembled monolayer on a Au(111) surface by opening of the disulfide, thus giving rise to a two-step self-assembly process. The 2 x 2-alpha-helix bundle protein and its template were studied by X-ray photo electron spectroscopy (XPS), electrochemical methods, and electrochemical in situ scanning tunneling microscopy (in situ STM). XPS showed that the cyclo-DTT opens on adsorption to a gold surface with the integrity of the 2 x 2-alpha-helix bundle proteins retained. The surface properties of the DTT and 2 x 2-alpha-helix bundle protein adlayer were characterized by interfacial capacitance and impedance techniques. Reductive desorption was used to determine the coverage of the adlayers, giving values of 65 and 16 muC cm(-2) for DTT and 2 x 2-helix, respectively. The 2 x 2-alpha-helix bundle protein adlayers were imaged by in situ STM. The images indicated a dense monolayer according with the voltammetric data. No long-range order could be detected, but two clearly distinct STM contrasts were assigned to 2 x 2-alpha-helix bundle protein molecules oriented in parallel and antiparallel conformations. The template molecule DTT alone forms highly ordered 30-40 nm domains, giving an adlayer density which agreed well with the coverage determined by voltammetry. This could be exploited in STM imaging of mixed DTT/2 x 2-alpha-helix bundle protein monolayers, with clearly distinct STM patterns of the two components.     

Oligosaccharide-modified poly(propyleneimine) dendrimers: synthesis, structure determination, and Cu(II) complexation

The multiple application of reductive amination on primary amino groups of first and second generation poly(propyleneimine) dendrimers is used as a one-pot approach to introduce twice the amount of the oligosaccharide units as surface groups, compared to initially present amino groups in the first and second generation dendrimers. This was proven by (1)H NMR, MALDI-TOF-MS, and LILBID-MS analysis. The size of these dendrimers was determined by the hydrodynamic radius using pulsed field gradient NMR and dynamic light scattering. Molecular modeling confirmed the presence of dense-shell dendrimers. These dendrimers exhibit a generation dependent Cu(II)/dendrimer ratio in an aqueous environment, highlighting these materials as possible metal-carrier systems with a well-defined oligosaccharide protection shell for application in a biological environment.     

Potential-induced structure changes of oligopyridine adlayers on Au(111) electrodes

The structure of a bisterpyridine-like oligopyridine (abbreviated as 2,4'-BTP) monolayer on Au(111), adsorbed from an acetone solution, was studied by in situ scanning tunneling microscopy and cyclic voltammetry in aqueous 0.1 M H2SO4. Short-range ordered adsorption with an average distance between the individual molecules of about 2 nm was observed only at electrode potentials positive of +0.4 V vs SCE, whereas at more negative potentials, no order could be found. With the help of Cu underpotential deposition, a potential-induced, fast, and fully reversible structure transition within the organic monolayer was identified at about +0.4 V vs SCE. At negative potentials the molecules apparently cluster together and consequently current-potential curves resemble those for a bare gold surface, whereas for E>+0.4 V vs SCE the molecules are spread over the entire surface in a hexagonal, close-packed fashion. This may have interesting consequences for switching between different template structures.     

A kinetically stabilized ferrocenyl diphosphene: synthesis, structure, properties, and redox behavior

A new, stable ferrocenyl diphosphene [Tbt-P==P-Fc] (1) (Tbt=2,4,6-tris[bis(trimethylsilyl)methyl]phenyl, Fc = ferrocenyl) was synthesized by the dehydrochlorination reaction of the corresponding diphosphane, [Tbt-P(H)-P(Cl)-Fc] (8), with 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) in good yield. Diphosphene 1 is very stable in the solid state and also in solution. In the 31P NMR spectrum (C6D6), diphosphene 1 showed a low-fielded AB quartet at delta 501.7 and 479.5 ppm with the coupling constant 1J(PP)=546 Hz, which is characteristic of an unsymmetrically substituted trans-diphosphene. The molecular structure of 1 was established by X-ray crystallographic analysis, which showed a trans-diphosphene with a C-P-P-C torsion angle of 177.86(17) degrees . The phosphorus-phosphorus bond length of 1 [2.0285(15) A] which is considerably shorter than the typical P-P single-bond lengths (ca. 2.22-2.24 A) and within the range of reported P=P double-bond lengths (1.985-2.051 A) for diaryl diphosphenes, evidenced the P=P double-bond character of 1 in the solid state. In addition, the cyclic voltammograms of 1 showed reversible reduction and oxidation couples at -1.95 and +0.34 V versus SCE, respectively. The electrochemical results for 1 were reasonably supported by the DFT calculations, which suggested that the LUMO and HOMO orbitals should be mainly pi* orbital of the diphosphene moiety and d orbitals of the iron(II) atom, respectively.     

Solubilizing sodium fluoride in acetonitrile: synthesis, molecular structure, and complexation behavior of bis(organostannyl)methyl-substituted crown ethers

The synthesis of the crown-ether-substituted bis(organostannyl)methanes Ph(3)SnCH(2)Sn(Ph(2))-CH(2)-[16]crown-5 (1) and Ph(2)ISnCH(2)Sn(I)(Ph)-CH(2)-[16]crown-5 (2) is reported. Both compounds have been characterized by elemental analyses, (1)H, (13)C, (19)F, and (119)Sn NMR spectroscopy, and in the case of compound 2 also by electrospray ionization mass spectrometry. Single-crystal X-ray diffraction analysis revealed for the aqua complex 2.H(2)O trigonal-bipyramidal-configured tin atoms with intramolecular Sn(1)-O(1) and Sn(2)-O(1W) distances of 2.555(2) and 2.440(3) A, respectively. The water molecule is trapped in a sandwich-like fashion between the crown ether oxygen atoms O(2) and O(4) and the Sn(2) atom. NMR spectroscopy unambiguously proved the ability of compound 2 in acetonitrile to overcome the high lattice energy of sodium fluoride and to complex the latter under charge separation.     

The structure, growth and reactivity of electrodeposited Ru/Au(111) surfaces

In order to elucidate electronic effects on the oxidation of CO on small Ru clusters, we investigated this reaction on well defined Ru/Au(111) model systems via parallel in-situ STM studies of the structure and electrochemical deposition of Ru on Au(111) in H₂SO₄ solution and cyclic voltammetry of CO monolayer oxidation on these surfaces. The Ru deposit consists of nanoscale islands, which coalesce with increasing coverage. The Ru saturation coverage depends on the deposition potential, resulting in Ru submonolayer (>0.1 V), (defective) monolayer (≥−0.1 V), and multilayer films (<−0.1 V). At potentials >0.6 V irreversible formation of Ru oxide/hydroxide species is observed, which can be partly reduced in the range 0.4 to 0.0 V. CO stripping commences at ≈0.1 V and occurs over a broad potential range. From the stripping charge a local CO coverage on the Ru monolayer islands of 0.7 ML was estimated. The observed influence of the morphology of the Ru deposit on the CO stripping voltammetry is explained by (local) variations in the CO adsorption energy due to electronic modifications of the Ru film.     

Surface structure and interface dynamics of alkanethiol self-assembled monolayers on Au(111)

Scanning tunneling microscopy (STM) and high-resolution electron energy loss spectroscopy (HREELS) were used to examine the structural transitions and interface dynamics of octanethiol (OT) self-assembled monolayers (SAMs) caused by long-term storage or annealing at an elevated temperature. We found that the structural transitions of OT SAMs from the c(4 x 2) superlattice to the (6 x square root 3) superlattice resulting from long-term storage were caused by both the dynamic movement of the adsorbed sulfur atoms on several adsorption sites of the Au(111) surface and the change of molecular orientation in the ordered layer. Moreover, it was found that the chemical structure of the sulfur headgroups does not change from monomer to dimer by the temporal change of SAMs at room temperature. Contrary to the results of the long-term-stored SAMs, it was found that the annealing process did not modify either the interfacial or chemical structures of the sulfur headgroups or the two-dimensional c(4 x 2) domain structure. Our results will be very useful for a better understanding of the interface dynamics and stability of sulfur atoms in alkanethiol SAMs on Au(111) surfaces.     

氧化锌有序结构在Au(111)和Cu(111)上的生长

利用NO₂或O₂作为氧化剂,研究了氧化锌在Au(111)和Cu(111)上的生长和结构。NO₂表现了更好的氧化性能,有利于有序氧化锌纳米结构或薄膜的生长。在Au(111)和Cu(111)这两个表面上,化学计量比氧化锌都形成非极性的平面化ZnO(0001)的表面结构。在Au(111)上,NO₂气氛下室温沉积锌倾向于形成双层氧化锌纳米结构;而在更高的沉积温度下,在NO₂气氛中沉积锌则可同时观测到单层和双层氧化锌纳米结构。O₂作为氧化剂时可导致形成亚化学计量比的ZnO_x结构。由于铜和锌之间的强相互作用会促进锌的体相扩散,并且铜表面可以被氧化形成表面氧化物,整层氧化锌在Cu(111)上的生长相当困难。我们通过使用NO₂作为氧化剂解决了这个问题,生长出了覆盖Cu(111)表面的满层有序氧化锌薄膜。这些有序氧化锌薄膜表面显示出莫尔条纹,表明存在一个ZnO和Cu(111)之间的莫尔超晶格。实验上观察到的超晶格结构与最近理论计算提出的Cu(111)上的氧化锌薄膜结构相符,具有最小应力。我们的研究表明,氧化锌薄膜的表界面结构可能会随氧化程度或氧化剂的不同而变化,而Cu(111)的表面氧化也可能影响氧化锌的生长。当Cu(111)表面被预氧化成铜表面氧化物时,ZnO_x的生长模式会发生变化,锌原子会受到铜氧化物晶格的限域形成单位点锌。我们的研究表明了氧化锌的生长需要抑制锌向金属基底的扩散,并阻止亚化学计量比ZnO_x的形成。因此,使用原子氧源有利于在Au(111)和Cu(111)表面上生长有序氧化锌薄膜。     

Methylthiolate on Au(111): adsorption and desorption kinetics

Low energy electron diffraction, Auger electron spectroscopy, X-ray photoelectron spectroscopy and line of sight mass spectrometry have been used to study the adsorption and desorption of dimethyldisulfide (DMDS) on Au(111). At 300 K adsorption is dissociative, forming a chemisorbed adlayer of methylthiolate with a 1/3 ML, (sq rt 3 x sq rt 3)R30 degrees, structure. At 100 K adsorption is molecular, with dissociation to form the 1/3 ML (sq rt 3 x sq rt 3)R30 degrees methylthiolate structure occurring at 138-160 K. A physisorbed DMDS layer, with a coverage of 1/6 ML of DMDS, forms on top of the (sq rt 3 x sq rt 3)R30 degrees chemisorbed MT surface for T < or = 180 K, with multilayers forming for T < or = 150 K. In temperature programmed desorption, multilayers of DMDS desorbed with zero order kinetics and an activation energy of 41 kJ mol(-1); the physisorbed layer desorbed with first order kinetics, exhibiting repulsive lateral interactions with an activation energy which varied from 63 kJ mol(-1) (theta = 0) to 51 kJ mol(-1) (theta = 1); the chemisorbed methylthiolate layer desorbed associatively as DMDS via the physisorbed layer, the activation energy for the reaction, 2 methylthiolate --> physisorbed DMDS, exhibiting repulsive lateral interactions with an activation energy which varied from 65 kJ mol(-1) (theta = 0) to 61 kJ mol(-1) (theta = 1). The physisorbed disulfide layer explains the pre-cursor state adsorption kinetics observed in sticking probability measurement, while its relatively facile formation provides a mechanism by which thiolate self-assembled monolayers can become mobile at room temperature.     

Polythiophene-block-poly(phenyl isocyanide) copolymers: One-pot synthesis,properties and applications

Conjugated block copolymers have gained increasing interests in recent years. Development of a novel method for facile synthesis of conjugated block copolymers with desired structures and functions is greatly desired. In this mini review, we summarized the recent advances in one-pot synthesis of conjugated block copolymers containing π-conjugated polythiophene and helical polyisocyanide segments by using a nickel(Ⅱ) complex as single catalyst. The sequential living polymerization of the two monomers proceeded in a controlled manner, affording expected block copolymers in high yields with controlled molecular weights(Mns) and narrow molecular weight distributions(Mw/Mns). By using this method, a family of block copolymers with expected structure and tunable compositions can be facilely prepared. Introducing functional groups onto the pendant, these block copolymers can exhibit interesting self-assembly property, tunable light emission and multi-responsiveness.