Hydrogen-bond-assisted excited-state deactivation at liquid/water interfaces

The excited-state dynamics of eosin B (EB) at dodecane/water and decanol/water interfaces has been investigated with polarization-dependent and time-resolved surface second harmonic generation. The results of the polarization-dependent measurements vary substantially with (1) the EB concentration, (2) the age of the sample, and (3) the nature of the organic phase. All of these effects are ascribed to the formation of EB aggregates at the interface. Aggregation also manifests itself in the time-resolved measurements as a substantial shortening of the excited-state lifetime of EB. However, independently of the dye concentration used, the excited-state lifetime of EB at both dodecane/water and decanol/water interfaces is much longer than in bulk water, where the excited-state population undergoes hydrogen-bond-assisted non-radiative deactivation in a few picoseconds. These results indicate that hydrogen bonding between EB and water molecules at liquid/water interfaces is either much less efficient than in bulk water or does not enhance non-radiative deactivation. This strong increase of the excited-state lifetime of EB at liquid/water interfaces opens promising avenues of applying this molecule as a fluorescent interfacial probe.     

Through-bond interactions and the localization of excited-state dynamics

The influence of through-bond interactions on nonadiabatic excited-state dynamics is investigated by time-resolved photoelectron spectroscopy (TRPES) and ab initio computation. We compare the dynamics of cyclohexa-1,4-diene, which exhibits a through-bond interaction known as homoconjugation (the electronic correlation between nonconjugated double bonds), with the nonconjugated cyclohexene. Each molecule was initially excited to a 3s Rydberg state using a 200 nm femtosecond pump pulse. The TRPES spectra of these molecules display similar structure and time constants on a subpicosecond time scale. Our ab initio calculations show that similar sets of conical intersections (a [1,2]- and [1,3]-hydrogen shift, as well as carbon-carbon bond cleavage) are energetically accessible to both molecules and that the geometry and orbital composition at the minimum energy crossing points to the ground state are directly analogous. These experimental and computational results suggest that the excited-state dynamics of cyclohexa-1,4-diene become localized at a single double bond and that the effects of through-bond interaction, dominant in the absorption spectrum, are absent in the excited-state dynamics. The notion of excited-state dynamics being localized at specific sites within the nuclear framework is analogous to the localization of light absorption by a subsystem within the molecule, designated a chromophore. We propose the utility of the analogous concept, denoted here as a dynamophore.     

Dynamical effects on vibrational and electronic spectra of hydroperoxyl radical water clusters

We have carried out ab initio molecular-dynamics studies on hydroperoxyl water clusters. Our studies are complemented by optimization, frequency, and excited-state calculations. The three main results we obtained are (a) the dynamically averaged energy gap between the highest-occupied molecular orbital and the lowest-unoccupied molecular orbital monotonically decreases as the number of water molecules is increased in a hydroperoxyl water cluster system, (b) the dynamical averaging of the potential-energy surface at finite temperature broadens the electronic excitation spectrum and changes the infrared spectrum in nontrivial ways, and (c) the structural analysis of our dynamics simulation indicates that the oxygen-oxygen distance in a solvated hydroperoxyl-water cluster is very similar to that found in protonated water clusters (Zundel: H5O2+) inspite of the fact that the latter possesses a positive charge and the hydroperoxyl-water cluster does not. Dynamical charge analysis and the weak acidity of HO2 are used to justify this result.     

Dynamics imaging of lipid phases and lipid-marker interactions in model biomembranes

Biomembranes are complex systems that regulate numerous biological processes. Lipid phases that constitute these membranes influence their properties and transport characteristics. Here, we demonstrate the potential of short-range dynamics imaging (excited-state lifetime, rotational diffusion, and order parameter) as a sensitive probe of lipid phases in giant unilamellar vesicles (GUVs). Liquid-disordered and gel phases were labeled with Bodipy-PC at room temperature. Two-photon fluorescence lifetime imaging microscopy of single-phase GUVs reveals more heterogeneity in fluorescence lifetimes of Bodipy in the gel phase (DPPC: 3.8+/-0.6 ns) as compared with the fluid phase (DOPC: 5.2+/-0.2 ns). The phase-specificity of excited-state lifetime of Bodipy-PC is attributed to the stacking of ordered lipid molecules that possibly enhances homo-FRET. Fluorescence polarization anisotropy imaging also reveals distinctive molecular order that is phase specific. The results are compared with DiI-C12-labeled fluid GUVs to investigate the sensitivity of our fluorescence dynamics assay to different lipid-marker interactions. Our results provide a molecular perspective of lipid phase dynamics and the nature of their microenvironments that will ultimately help our understanding of the structure-function relationship of biomembranes in vivo. Furthermore, these ultrafast excited-state dynamics will be used for molecular dynamics simulation of lipid-lipid, lipid-marker and lipid-protein interactions.     

The Effect of Biological Substrates on the Ultrafast Excited-state Dynamics of Zinc Phthalocyanine Tetrasulfonate in Solution

Zinc phthalocyanine tetrasulfonate (ZnPcS₄), a potential photosensitizer for photodynamic therapy (PDT), has been studied using femtosecond laser spectroscopy. The excited-state dynamics in water have been found to be fast (<80 ps) and dominated by intermolecular aggregation. Since the proposed mechanism for PDT is energy transfer from the triplet excited state of the photosensitizer to triplet O₂ creating singlet O₂, the short lifetime is expected to be unfavorable for producing singlet O₂. This leads to the suggestion that the presence of biological substrates may have an effect on the excited-state dynamics. To test this hypothesis, the lifetimes of the ex-cited states of ZnPcS₄ have been directly measured in the presence of a model membrane, n-hexadecyltrimethylammonium bromide (CTAB). The excited-state dynamics of ZnPcS₄ in buffer solutions and with human serum albumin (HSA) have also been measured. The presence of HSA and CTAB increases the excited-state lifetime significantly relative to that observed in water. The longer lifetime of ZnPcS4 in CTAB (>1 ns) indicates that the micellar surface favors monomer formation. By increasing the excited-state lifetime, the surface substantially in-creases the photosensitizing potential of ZnPcS₄.     

Femtosecond time-resolved electronic sum-frequency generation spectroscopy: a new method to investigate ultrafast dynamics at liquid interfaces

We developed a new surface-selective time-resolved nonlinear spectroscopy, femtosecond time-resolved electronic sum-frequency generation (TR-ESFG) spectroscopy, to investigate ultrafast dynamics of molecules at liquid interfaces. Its advantage over conventional time-resolved second harmonic generation spectroscopy is that it can provide spectral information, which is realized by the multiplex detection of the transient electronic sum-frequency signal using a broadband white light continuum and a multichannel detector. We studied the photochemical dynamics of rhodamine 800 (R800) at the air/water interface with the TR-ESFG spectroscopy, and discussed the ultrafast dynamics of the molecule as thoroughly as we do for the bulk molecules with conventional transient absorption spectroscopy. We found that the relaxation dynamics of photoexcited R800 at the air/water interface exhibited three characteristic time constants of 0.32 ps, 6.4 ps, and 0.85 ns. The 0.32 ps time constant was ascribed to the lifetime of dimeric R800 in the lowest excited singlet (S(1)) state (S(1) dimer) that is directly generated by photoexcitation. The S(1) dimer dissociates to a monomer in the S(1) state (S(1) monomer) and a monomer in the ground state with this time constant. This lifetime of the S(1) dimer was ten times shorter than the corresponding lifetime in a bulk aqueous solution. The 6.4 ps and 0.85 ns components were ascribed to the decay of the S(1) monomer (as well as the recovery of the dimer in the ground state). For the 6.4 ps time constant, there is no corresponding component in the dynamics in bulk water, and it is ascribed to an interface-specific deactivation process. The 0.85 ns time constant was ascribed to the intrinsic lifetime of the S(1) monomer at the air/water interface, which is almost the same as the lifetime in bulk water. The present study clearly shows the feasibility and high potential of the TR-ESFG spectroscopy to investigate ultrafast dynamics at the interface.     

Simultaneous generation of different types of ion pairs upon charge-transfer excitation of a donor-acceptor complex revealed by ultrafast transient absorption spectroscopy

The excited-state dynamics of the methylperylene/tetracyanoethylene (MPe/TCNE) donor-acceptor complex has been investigated in various solvents using femtosecond transient absorption spectroscopy. The transient spectra reveal the formation of two types of ion pairs: The first (IP1), constituting the major fraction of the total ion-pair population, is characterized by a broad and red-shifted absorption spectrum compared to that of the free MPe cation and by a subpicosecond lifetime, whereas the second (IP2) has a spectrum closer to that of MPe cation and a lifetime of a few picoseconds. A substantial polarization anisotropy was observed with IP1 but not with IP2, indicating a relatively well-defined structure for the former. The reaction scheme that best accounts for the observed dynamics and its solvent dependence involves the simultaneous excitation of complexes that differ by their electronic coupling. The more coupled complexes have a high absorption coefficient and thus yield IP1, which undergoes ultrafast charge recombination, whereas the less coupled complexes have a lower probability to be excited and lead to the longer-lived IP2.     

The effect of hydrogen bonding on the excited-state proton transfer in 2-(2'-hydroxyphenyl)benzothiazole: a TDDFT molecular dynamics study

The dynamics of the excited-state proton transfer (ESPT) in a cluster of 2-(2'-hydroxyphenyl)benzothiazole (HBT) and hydrogen-bonded water molecules was investigated by means of quantum chemical simulations. Two different enol ground-state structures of HBT interacting with the water cluster were chosen as initial structures for the excited-state dynamics: (i) an intramolecular hydrogen-bonded structure of HBT and (ii) a cluster where the intramolecular hydrogen bond in HBT is broken by intermolecular interactions with water molecules. On-the-fly dynamics simulations using time-dependent density functional theory show that after photoexcitation to the S(1) state the ESPT pathway leading to the keto form strongly depends on the initial ground state structure of the HBT-water cluster. In the intramolecular hydrogen-bonded structures direct excited-state proton transfer is observed within 18 fs, which is a factor two faster than proton transfer in HBT computed for the gas phase. Intermolecular bonded HBT complexes show a complex pattern of excited-state proton transfer involving several distinct mechanisms. In the main process the tautomerization proceeds via a triple proton transfer through the water network with an average proton transfer time of approximately 120 fs. Due to the lack of the stabilizing hydrogen bond, intermolecular hydrogen-bonded structures have a significant degree of interring twisting already in the ground state. During the excited state dynamics, the twist tends to quickly increase indicating that internal conversion to the electronic ground state should take place at the sub-picosecond scale.     

Influence of environment on the electronic structure of Cob(III)alamins: time-resolved absorption studies of the S(1) state spectrum and dynamics

Transient absorption spectroscopy has been used to elucidate the nature of the S1 intermediate state populated following excitation of cob(III)alamin (Cbl(III)) compounds. This state is sensitive both to axial ligation and to solvent polarity. The excited-state lifetime as a function of temperature and solvent environment is used to separate the dynamic and electrostatic influence of the solvent. Two distinct types of excited states are identified, both assigned to pi3d configurations. The spectra of both types of excited states are characterized by a red absorption band (ca. 600 nm) assigned to Co 3d --> 3d or Co 3d --> corrin pi* transitions and by visible absorption bands similar to the corrin pi-->pi* transitions observed for ground state Cbl(III) compounds. The excited state observed following excitation of nonalkyl Cbl(III) compounds has an excited-state spectrum characteristic of Cbl(III) molecules with a weakened bond to the axial ligand (Type I). A similar excited-state spectrum is observed for adenosylcobalamin (AdoCbl) in water and ethylene glycol. The excited-state spectrum of methyl, ethyl, and n-propylcobalamin is characteristic of a Cbl(III) species with a sigma-donating alkyl anion ligand (Type II). This Type II excited-state spectrum is also observed for AdoCbl bound to glutamate mutase. The results are discussed in the context of theoretical calculations of Cbl(III) species reported in the literature and highlight the need for additional calculations exploring the influence of the alkyl ligand on the electronic structure of cobalamins.     

Auger spectrum of a water molecule after single and double core ionization

The high intensity of free electron lasers opens up the possibility to perform single-shot molecule scattering experiments. However, even for small molecules, radiation damage induced by absorption of high intense x-ray radiation is not yet fully understood. One of the striking effects which occurs under intense x-ray illumination is the creation of double core ionized molecules in considerable quantity. To provide insight into this process, we have studied the dynamics of water molecules in single and double core ionized states by means of electronic transition rate calculations and ab initio molecular dynamics (MD) simulations. From the MD trajectories, photoionization and Auger transition rates were computed based on electronic continuum wavefunctions obtained by explicit integration of the coupled radial Schro?dinger equations. These rates served to solve the master equations for the populations of the relevant electronic states. To account for the nuclear dynamics during the core hole lifetime, the calculated electron emission spectra for different molecular geometries were incoherently accumulated according to the obtained time-dependent populations, thus neglecting possible interference effects between different decay pathways. We find that, in contrast to the single core ionized water molecule, the nuclear dynamics for the double core ionized water molecule during the core hole lifetime leaves a clear fingerprint in the resulting electron emission spectra. The lifetime of the double core ionized water was found to be significantly shorter than half of the single core hole lifetime.     

The Interplay Between Lead Vacancy and Water Rationalizes the Puzzle of Charge Carrier Lifetimes in CH3NH3PbI3: Time-Domain Ab Initio Analysis

The perovskite CH₃NH₃PbI₃ excited-state lifetimes exhibit conflicting experimental results under humid environments. Using ab initio nonadiabatic (NA) molecular dynamics, we demonstrate that the interplay between lead vacancy and water can rationalize the puzzle. The lead vacancy reduces NA coupling by localizing holes, slowing electron–hole recombination. By creating a deep electron trap state, the coexistence of a neutral lead vacancy and water molecules enhances NA coupling, accelerating charge recombination by a factor of over 3. By eliminating the mid-gap state by accepting two photoexcited electrons, the negatively charged lead vacancy interacting with water molecules increases the carrier lifetime over 2 times longer than in the pristine system. The simulations rationalize the positive and negative effects of water on the solar cell performance exposure to humidity.     

Exciplexes and the fluorescence of Staphylococcus aureus endonuclease

Abstract— The family of fluorescence spectra obtained from the endonuclease of Staphylococcus aureus at temperatures from 140° to 230°K, when superimposed, show a unique intersection point at 336nm. This indicates that only two types of fluorescent species need be considered with this protein, a low-temperature form and a high-temperature form. Since the high-temperature form lacks fine structure and has a large Stokes' shift, the spectral observations are consistent with the notion that high-temperature fluorescence comes from a tryptophan that has formed a complex with a solvent molecule within its excited-state lifetime. The absorption spectrum and both of the fluorescence spectra indicate that the tryptophan, even in the high-temperature state, is in an environment with a low dielectric constant.     

Photovoltaic properties of the flavonoid-based photosensitizers: Molecular-scale perspective on the natural dye solar cells

The molecular modification and the effects of the gas and water media on the ability of some flavonoids as the photosensitizers in the natural dye-sensitized solar cells were theoretically investigated. According to the results, water increases the electrophilicity of the dyes and weakens the dye/TiO₂ coupling, prohibiting the electron injection toward TiO₂. A longer path for charge transfer and a less electron-hole overlap for dihydroxychromens elevate the electron transfer more efficient than trihydroxychromen-based flavonoids. However, the presence of water molecules within an increment in the  OH groups in the flavonoid structures improves their spectroscopic properties, which is related to decrement in the gap of the frontier molecular orbitals and increment in the oscillator strength. Also, such favorable structural effects and influence of the water medium on the polarizability and excited-state lifetime have emerged. According to the energy conversion efficiency, water is a favorable solvent for dihydroxychromen-based flavonoids. Finally, different analyses on the structural geometries, excited-state, lifetime within the kinetics, and dynamics of the photovoltaic processes were performed and discussed.     

Ultrafast dynamics of flavins in five redox states

We report here our systematic studies of excited-state dynamics of two common flavin molecules, FMN and FAD, in five redox states--oxidized form, neutral and anionic semiquinones, and neutral and anionic fully reduced hydroquinones--in solution and in inert protein environments with femtosecond resolution. Using protein environments, we were able to stabilize two semiquinone radicals and thus observed their weak emission spectra. Significantly, we observed a strong correlation between their excited-state dynamics and the planarity of their flavin isoalloxazine ring. For a bent ring structure, we observed ultrafast dynamics from a few to hundreds of picoseconds and strong excitation-wavelength dependence of emission spectra, indicating deactivation during relaxation. A butterfly bending motion is invoked to get access to conical intersection(s) to facilitate deactivation. These states include the anionic semiquinone radical and fully reduced neutral and anionic hydroquinones in solution. In a planar configuration, flavins have a long lifetime of nanoseconds, except for the stacked conformation of FAD, where intramolecular electron transfer between the ring and the adenine moiety in 5-9 ps as well as subsequent charge recombination in 30-40 ps were observed. These observed distinct dynamics, controlled by the flavin ring flexibility, are fundamental to flavoenzyme's functions, as observed in photolyase with a planar structure to lengthen the lifetime to maximize DNA repair efficiency and in insect type 1 cryptochrome with a flexible structure to vary the excited-state deactivation to modulate the functional channel.     

Electronic spectroscopy of cold, protonated tryptophan and tyrosine

We report here a new method to obtain electronic spectra of biomolecular ions that are produced in the gas phase by electrospray and cooled to approximately 10 K in a 22-pole ion trap, and we demonstrate this technique by applying it to protonated tryptophan and tyrosine. Cooling in the trap greatly simplifies the spectrum of protonated tyrosine, which exhibits a well-defined band origin and clearly resolved low frequency vibrational bands. In contrast, the spectrum of protonated tryptophan exhibits only broad features, even at low temperatures, suggesting that a fast nonradiative process broadens the individual vibronic features, even upon excitation at the electronic band origin. The method demonstrated here should be applicable to a wide variety of biological molecules.     

Fluorescence of cis-1-amino-2-(3-indolyl)cyclohexane-1-carboxylic acid: a single tryptophan chi(1) rotamer model

A constrained derivative, cis-1-amino-2-(3-indolyl)cyclohexane-1-carboxylic acid, cis-W3, was designed to test the rotamer model of tryptophan photophysics. The conformational constraint enforces a single chi(1) conformation, analogous to the chi(1) = 60 degrees rotamer of tryptophan. The side-chain torsion angles in the X-ray structure of cis-W3 were chi(1) = 58.5 degrees and chi(2) = -88.7 degrees. Molecular mechanics calculations suggested two chi(2) rotamers for cis-W3 in solution, -100 degrees and 80 degrees, analogous to the chi(2) = +/-90 degrees rotamers of tryptophan. The fluorescence decay of the cis-W3 zwitterion was biexponential with lifetimes of 3.1 and 0.3 ns at 25 degrees C. The relative amplitudes of the lifetime components match the chi(2) rotamer populations predicted by molecular mechanics. The longer lifetime represents the major chi(2) = -100 degrees rotamer. The shorter lifetime represents the minor chi(2) = 80 degrees rotamer having the ammonium group closer to C4 of the indole ring (labeled C5 in the cis-W3 X-ray structure). Intramolecular excited-state proton transfer occurs at indole C4 in the tryptophan zwitterion (Saito, I.; Sugiyama, H.; Yamamoto, A.; Muramatsu, S.; Matsuura,T. J. Am. Chem. Soc. 1984, 106, 4286-4287). Photochemical isotope exchange experiments showed that H-D exchange occurs exclusively at C5 in the cis-W3 zwitterion, consistent with the presence of the chi(2) = 80 degrees rotamer in solution. The rates of two nonradiative processes, excited-state proton and electron transfer, were measured for individual chi(2) rotamers. The excited-state proton-transfer rate was determined from H-D exchange and fluorescence lifetime data. The excited-state electron-transfer rate was determined from the temperature dependence of the fluorescence lifetime. The major quenching process in the -100 degrees rotamer is electron transfer from the excited indole to carboxylate. Electron transfer also occurs in the 80 degrees rotamer, but the major quenching process is intramolecular proton transfer. Both quenching processes are suppressed by deprotonation of the amino group. The results for cis-W3 provide compelling evidence that the complex fluorescence decay of the tryptophan zwitterion originates in ground-state heterogeneity with the different lifetimes primarily reflecting different intramolecular excited-state proton- and electron-transfer rates in various rotamers.     

Hydration-dependent structural deformation of guanine in the electronic singlet excited state

Theoretical study was performed to investigate how the degree of hydration affects the structures and properties of the canonical form (keto-N9H) of guanine in the ground and lowest singlet pipi* excited state. This work is the continuation of our earlier work where we have studied the hydration of guanine in the first solvation shell with one, three, five, and six water molecules. In the present investigation, we have considered 7-13 water molecules in hydrating guanine. Ground-state geometries were optimized at the Hartree-Fock level, whereas the configuration interaction-singles (CIS) method was used for the excited-state geometry optimization. The 6-311G(d,p) basis set was used in all calculations. The harmonic vibrational frequency analysis was used to determine the nature of the optimized ground- and excited-state potential energy surfaces; all geometries were found to be minima at the respective potential surfaces. It was found that the degree of hydration has a significant influence on the excited-state structural nonplanarity of guanine. It is expected that excited-state dynamics of guanine will depend on the degree of hydration. Ground- and excited-state geometries of selected hydrated species were also optimized in the bulk water solution using the polarizable continuum model (PCM). It was found that bulk water solution generally does not have significant influence on the structure of the hydrated species. Effects of hydration on different stretching vibrations in the ground and excited states are also discussed.     

Time-dependent density functional theory study on electronically excited States of coumarin 102 chromophore in aniline solvent: reconsideration of the electronic excited-state hydrogen-bonding dynamics

The time-dependent density functional theory method was performed to investigate the electronically excited states of the hydrogen-bonded complex formed by coumarin 102 (C102) chromophore and the hydrogen-donating aniline solvent. At the same time, the electronic excited-state hydrogen-bonding dynamics for the photoexcited C102 chromophore in solution was also reconsidered. We demonstrated that the intermolecular hydrogen bond CO...H-N between C102 and aniline molecules is significantly strengthened in the electronically excited-state upon photoexcitation, since the calculated hydrogen bond energy increases from 25.96 kJ/mol in the ground state to 37.27 kJ/mol in the electronically excited state. Furthermore, the infrared spectra of the hydrogen-bonded C102-aniline complex in both the ground state and the electronically excited state were also calculated. The hydrogen bond strengthening in the electronically excited-state was confirmed for the first time by monitoring the spectral shift of the stretching vibrational mode of the hydrogen-bonded N-H group in different electronic states. Therefore, we believed that the dispute about the intermolecular hydrogen bond cleavage or strengthening in the electronically excited-state of coumarin 102 chromophore in hydrogen donating solvents has been clarified by our studies.