Electrochemical Study on the Interaction Between Neutral Red and DNA

IntroductionDeoxyribonucleic acid( DNA) is the most im-portant germ plasma of most organisms.It playsan importantrole in the process ofstoring,copyingand transmitting germ messages.There have beenmany papers studying on the interaction betweensmall molecules and DNA since the1 960′s.Nowthe researches have become a field of common in-terest[1] .Those researches have contributed to theunderstanding of the way of the interaction be-tween DNA and protein.What is more,those re-searches are he…     

OAP-H2O2-HRP酶促反应产物与DNA相互作用的光谱及电化学研究

脱氧核糖核酸(DNA)是生物的基本遗传物质，对其研究是生命科学研究领域中极其重要的内容，其中有关DNA靶向分子与DNA之间相互作用的研究一直是一个比较活跃的领域，继Bard等用电化学方法对溶液中的电活性物质与DNA相互作用进行研究之后，又有许多相关的研究成果相继报道。3-氨基酚噁嗪(AP，即寻霉素A)与放线菌素D的生成有关，放线菌素D在伴随DNA指导RNA的合成中起作用，AP被用作放线菌素D的行为模型，对放线菌素D还原成1个N-10中心阴离子提供信息。     

胡椒碱在碳纳米管修饰电极上的电化学行为研究

研究了胡椒碱在碳纳米管修饰电极上的电化学行为,在pH为6.4的磷酸盐缓冲溶液中,胡椒碱在-1.12V(vs.SCE)处有一灵敏的还原峰.与裸电极相比,还原峰电位明显正移,峰电流显著增加,表明该修饰电极对胡椒碱的还原反应具有明显的催化作用.峰电流与胡椒碱的浓度在10-6～10-5mol/L范围内呈良好的线性关系(r=0.995),检出限为2.0×10-7mol/L.同时,计算了电荷转移数和扩散系数,考查了修饰电极的重现性,7次平行测量的RSD为4.96%.     

Electrochemical Studies of Anticancer Herbal Drug Sophoridine and Its Interaction with DNA

Sophoridine is a new anticancer herbal drug with remarkable antitumor effect and lower toxicity. In this paper, the electrochemical investigation of sophoridine and its interaction with DNA is reported. In 0.1 mol L^?1 phosphate buffer solution (pH 7.0), sophoridine exhibited excellent electrochemical activity. In the presence of DNA, the peak current of sophoridine decreased in a quantitative fashion and the peak potential shifted to a more positive potential value. It suggests the dominance of intercalative interaction. Importantly, as to the interaction between sophoridine and DNA in solution, characteristic parameters such as the binding stoichiometry and association equilibrium constant according to the Hill model for cooperative binding have been determined.     

Electrochemical and Spectroscopic Studies on Interaction between Complex of Copper(Ⅱ) with Schiff Base Ligand and DNA

The crystal structure of ( [CuL (H2O) 2 ] (ClO4) 2 · 2H2O, CuL) (L ＝ N- (5-sulfosalicylidene)-4' -bromoaniline) was determined by means of X-ray crystallography. The interaction between CuL and salmon sperm DNA in a 0. 1 mol/L HOAc-NaOAc buffer solution (pH 5.10) was investigated by cyclic voltammetry and UV-Vis spectroscopy. A couple of redox peaks of CuL in the cyclic voltammograms(CV) can be seen at the glassy carbon electrode. It was found that the peak current of CuL decreased significantly with a negative shift of the peak potential in the presence of DNA compared with that in the absence of DNA. In addition,the decreased absorbance of CuL was observed with increasing the concentration of DNA; the absorption spectrum of an ethidium bromide(EB)-DNA system inthe presence of CuL confirms that the binding mode of CuL to DNA is different from the intercalation of EB with DNA. All the experimental results indicate that CuL can bind to DNA by electrostatic binding and form a 1:1 association complex with a binding constant of 2.72×104 L/mol.     

Interaction of DNA with hydroxyapatite. Studies on the effect of the phosphate concentration of the column equilibration and washing buffer

The ability of hydroxyapatite to bind DNA effectively in phosphate solutions used for column equilibration, sample loading and column washing has been examined. It was demonstrated that substantial amounts of DNA (up to 40%) were eluted in the washing buffer when the phosphate concentration in the lysing solution or urea-phosphate used for column equilibration, sample loading and column washing was 0.24 M. A reduction in the phosphate concentration from 0.24 to 0.15 M in urea-phosphate solution led to almost 100% binding, whereas a similar reduction in the lysing solution did not. A modified method for loading and eluting DNA from hydroxyapatite columns is presented.     

Voltammetric Detection of the DNA Interaction with Toluidine Blue

Binding reactions of toluidine blue (TB) with herring fish DNA in pH 6.0 Britton–Robinson (B–R) buffer solution have been investigated by cyclic voltammetry and linear‐sweep voltammetry at a glassy carbon electrode. TB has a couple of well‐defined redox peaks. The addition of DNA into the TB solution resulted in the decrease of the redox‐peak currents and the shift negatively of the anodic peak potential. The values of the electrochemical parameters such as the electron number of the electrochemical reaction, the electron transfer coefficient and the electrochemical reaction standard rate constant in the absence and presence of DNA, as well as the values of binding constant and binding ratio of DNA with TB were obtained. Almost unchanged values of the electrochemical parameters in the absence and presence of DNA show that nonelectroactive complexes were formed when TB interacted with DNA. DNA concentration can be determined by the decrease of the peak current of TB. The binding mode of TB with DNA was discussed.     

Electrochemical studies of the interaction of Basic Brown G with DNA and determination of DNA

A new method of electrochemical probe has been proposed for the determination of Herring Sperm DNA (DNA) based on its interaction with Basic Brown G (BBG). The electrochemical behavior of interaction of BBG with DNA was investigated on Hg electrode. In 0.1 mol L⁻¹ NH₃-NH₄Cl buffer solution (pH 8.0), BBG can be reduced on Hg electrode with a well-defined voltammetric peak at −0.67 V (versus SCE). In the presence of DNA, the reduction peak current of BBG decreases and the peak potential shifts to a more positive potential without the appearance of new peak. The study shows that a new BBG-DNA complex is formed by linear sweep voltammetry (LSV) and spectrophotometry. The decrease of the second order derivative of reductive peak current (Δi^″p) of BBG is proportional to the concentration of DNA in the range of 0.10-36 μg mL⁻¹. Limit of detection of DNA is 0.04 μg mL⁻¹. DNA of Hepatitis B Virus in serum samples was determined satisfactorily. Additionally, the binding mechanism was preliminarily discussed. The mode of interaction between BBG and DNA was found to be intercalation binding.     

多胺修饰β-环糊精与阴离子表面活性剂的相互作用

采用荧光和紫外-可见光谱滴定法测定了单-[6-(氨基)-6-脱氧]-β-环糊精(NH2-β-CD)、单-[6-(乙二胺)-6-脱氧]-β-环糊精(DEN-β-CD)、单-[6-(二乙烯三胺)-6-脱氧]-β-环糊精(DETA-β-CD)和单-[6-(三乙烯四胺)-6-脱氧]-β-环糊精(TETA-β-CD)在磷酸缓冲溶...     

Investigation on DNA assembly to neutral red-cyclodextrin complex by molecular spectroscopy

DNA assembling to neutral red (NR) and cyclodextrins (CDs)-NR inclusion complex has been investigated by means of absorption, fluorescence and resonance light scattering (RLS). Depending on the molar ratio R of NR:DNA, the binding of NR with DNA involved in two processes at pH 7.50 and ionic strength 0.0045. The first process occurs in R>2.5, where the neutral form of NR was predominant and enhanced RLS was observed, indicating the aggregation of NR neutral form molecules on the molecular surface of DNA. The second process occurs in R<2.5, where an absorption band at 540 nm and a fluorescent excitation and emission band at 550 and 607 nm respectively provided compelling evidence that the binding of NR to DNA leaded to extensive NR protonation even at pH 7.50, and that a protonated NR (the acidic form of NR) can form DNA adducts with a binding mode different from that of the unprotonated form (the neutral form of NR). The results were also illustrated by the CDs-NR supramolecular system. The experimental data showed that CDs including beta-CD, hydroxypropyl-beta-CD (HP-beta-CD) and sulfobutylether-beta-CD (SBE-beta-CD) superior to include the neutral form of NR, in addition, the inclusion complex decomposed when it bound to DNA. Thus, the decomposed NR was also protonated to form DNA adducts with intercalative mode. In fact, CDs played a role to carry guest molecule to intercalate DNA. A related mechanism is proposed.     

Cationic copolymer-mediated DNA immobilization: interfacial structure and composition as determined by ellipsometry, dual polarization interferometry, and neutron reflection

DNA immobilization onto support surfaces is required in biotechnological applications such as microarrays and gene delivery. This important interfacial molecular process can be mediated from a preadsobred cationic polymer. There is, however, a lack of understanding over the control of the interfacial composition and structural distribution of the DNA immobilized. We have used a combined approach of spectroscopic ellipsometry (SE), dual polarization interferometry (DPI) and neutron reflection (NR) to determine the interfacial polymer adsorption and the subsequent DNA binding. Cationic diblock copolymers incorporating 30 phosphorylcholine (PC) groups and different diethylaminoethyl groups, referred to as MPC30-DEAn, were chosen because of their well-defined molecular architecture. While our studies revealed different effects of surface charge and hydrophobicity, the amount of copolymers adsorbed on both model surfaces showed a broad trend of increase with solution pH, indicating a strong effect arising from pH-dependent charge density on the copolymers. In contrast, the copolymer structure and solution concentration showed a weak effect under the conditions studied. The subsequent DNA binding at pH 7 showed that on both surfaces the amount of DNA immobilized followed an approximate 1:1 charge interaction for all different DNA samples studied, irrespective of single or double strand, or different DNA size, indicating the dominant effect of electrostatic interaction between the two species. Both DPI and NR revealed consistent thickness increase upon DNA binding. Furthermore, with increasing DNA size, the interfacial layer became much thicker, and charge interaction drove more extensive interfacial mixing between the two species. Our results show that the amount of DNA immobilized is controlled by the amount of cationic copolymer preadsorbed that is in turn controlled by the solution pH and surface chemistry but that is barely affected by the type and concentration of DNA or cationic copolymer.     

A Comparative Study of Complexation of β-Cyclodextrin,Calix[4]arenesulfonate and Cucurbit[7]uril with Dye Guests: Fluorescence Behavior and Binding Ability

The complexation behaviors of acridine red (AR), neutral red (NR) and rhodamine B (RhB) dye guest molecules by three kinds of supramolecular hosts, including β-cyclodextrin (β-CD), calix[4]arene tetrasulfonate (C4AS) and cucurbit[7]uril (CB[7]), have been investigated by means of fluorescence spectra in aqueous citrate buffer solution (pH 6.0). The results obtained show that the three hosts, possessing different types of cavity, lead to various complexation-induced fluorescence of dye guests, and present different binding ability and molecular selectivity. The complexation stability constants decrease in the order of NR > AR > RhB for C4AS and CB[7] hosts, while in the order of RhB > AR > NR for β-CD host. Particularly, CB[7] displays the strongest binding ability with NR (K _S = 33300 M^? 1), and provides the molecular selectivity of 4.8 for NR/AR pairs. Although the binding ability of C4AS for present dye guests is weaker than CB[7], but the molecular selectivity of the two hosts are nearly equivalent. β-CD shows stronger binding ability with RhB (K _S = 5880 M^? 1) as comparison with CB[7] and C4AS. Furthermore, the solvent effects and salt effects during the course of complexation have also been investigated.     

A method for the prediction of metallocene-type catalyst activity in olefin (co)polymerisation reactions

The use of ultraviolet/visible spectroscopy (UV-Vis) for the prediction of metallocene catalyst potential for the polymerisation of olefins is described. Upon addition of methylaluminoxane (MAO) to rac-[C₂H₄(1-indenyl)₂ZrCl₂] ([Al]/[Zr] = 200) the ligand-to-metal charge transfer band shows a hypsochromic shift while a bathochromic shift is observed when more MAO is added ([Al]/[Zr] = 2000). These shifts can be explained by assuming that methylation of the zirconocene by MAO occurs in the case of [Al]/[Zr] = 200 while a cationic complex, the active catalytic system, is formed upon addition of more MAO, e.g., [Al]/[Zr] = 2000.     

Oligonucleotide charge states in negative ionization electrospray-mass spectrometry are a function of solution ammonium ion concentration

The charge state distribution for oligonucleotides detected using negative ionization electro-spray-mass spectrometry has been studied as a function of solution counterion concentration. In the absence of added buffer, an average charge state (Z) of ?7.2 is observed for a 10 µM aqueous solution of a 14mer DNA at pH 7.0, with [M ? 8H]^8? the most abundant ion. As the solution concentration of ammonium acetate increases from 0.1 to 33 mM, Z shifts to ?3.8 with [M ? 4H]^4? the most abundant charge state. The shift in most abundant charge state from [M ? 7H]^7? to [M ? 4H]^4? occurs abruptly between 1.0 and 10 mM NH₄OAc. Above 100 mM NH₄OAc, the value of Z plateaus at ?3.1, with [M ? 3H]^3? the most abundant charge state. The addition of 1–50 mM glycine to the analyte solution does not alter Z, suggesting that the changes in charge state observed by using ammonium acetate result from a solution equilibration of cations around the DNA strand, rather than nonspecific gas-phase proton transfers during the electrospray process. The fraction of neutralized phosphate groups reaches a maximum of 0.79 ± 0.03 independent of length and sequence.     

苯乙烯嘧啶化合物的合成及其作为pH探针的光谱特点

合成并表征了化合物4,6-二[（4′-二乙基胺基）苯乙烯基]嘧啶-2-醇。 通过研究该化合物在不同pH值的磷酸盐缓冲溶液中紫外-可见吸收光谱和荧光光谱的变化,发现λmax约为500 nm的吸收峰在溶液pH=6.78中吸收强度最大。 荧光发射峰随着pH值的升高逐渐减弱,直至淬灭（pH=5.51）。     

Studies on the Recognition Interaction of Rhodamine B and DNA by Voltammetry

Introduction Theinteractionofvariousmoleculessuchas anticancerdrugs,metalcomplexesandorganic dyeswithDNAhasattractedaconsiderableinter- estofsomeresearchersinrecentyears.Theinflu- encesofsmallorganicmoleculesontheDNAstruc- tureandfunctionareofgreatimportanceindrug composition,carcinogenicmechanismandgenemu- tation[1_3].Atpresent,manymethodsandmodels havebeenproposedforthestudyoftheinteraction ofDNAwithsmallmolecules,suchasspectropho- tometry,fluorometry,lightscatteringtechniques andelectro…     

Electrochemical Characteristics of Poly(<Emphasis Type="Italic">o</Emphasis>-Aminobenzoic Acid) Modified Glassy-Carbon Electrode and Its Electrocatalytic Activity towards Oxidation of Epinephrine

Poly(o-aminobenzoic acid) (o-ABA) film is deposited on glassy-carbon electrode (GCE) by electropolymerization in pH 7.0 phosphate buffer solution (PBS). Electrochemical behavior of modified electrode is investigated by electrochemical impedance spectroscopy (EIS), different pulse voltammetry (DPV), and cyclic voltammetry (CV). The results indicate that there is a greater resistance during the electron transfer process in poly(o-ABA) film than in bare GCE for the redox of [Fe(CN)₆]³⁻/[Fe(CN)₆]⁴⁻. Further research indicates that epinephrine (EP) can be strongly absorbed on the surface of the poly(o-ABA) film-modified electrode. The modified electrode shows an excellent electrocatalytical activity on EP oxidation. The EP cathodic peak potential shifts negatively with a slope of −53.5 mV/pH, indicating that equal amounts of proton and electron are involved in the electrode reaction process. In pH 7.0 PBS, the peak current of EP and the concentration has a linear relationship from 0 to 65 μM by amperometric current-time curve. __________ From Elektrokhimiya, Vol. 41, No. 9, 2005, pp. 1059–1065. Original English Text Copyright ? 2005 by Cheng, Jin, Zhang. The text was submitted by the authors in English.     

Spectral properties and G-quadruplex DNA binding selectivities of a series of unsymmetrical perylene diimides

A series of new unsymmetrical perylene diimides have been synthesized to investigate their binding selectivities to G-quadruplex DNA structure, a unique four-stranded DNA motif, which is significant to the regulation of telomerase activity. The structures of the perylene diimides have been characterized by IR spectrophotometer, ¹H NMR, ¹³C NMR, MS, TGA and time-resolved instruments. Spectrochemical behaviors have been investigated by visible absorption and fluorescence emission spectra. The spectral characterization of the compounds has been investigated in five common organic solvents of different polarity and in water (in 170 mM phosphate buffer at pH 6). Marked red shifts of absorbance and fluorescence emission bands of the compounds in aqueous solution are compared with the other organic solutions. The fluorescence quantum yields are determined low in more polar solvents and also calculated to be about less than about 0.05 in aqueous solution because of the aggregation effects. Photodegradation rate constants (k_p) of the synthesized compounds have been compared under xenon lamp irradiation in acetonitrile solution.Binding abilities of the synthesized perylene diimides to different form of DNA strands have been investigated by visible absorption and fluorescence spectroscopy in the phosphate buffer solutions. Also, pH-dependent aggregation and G-quadruplex DNA binding selectivity of these ligands have been compared. Among these ligands, N-(2,6-diisopropylphenyl)-N′-(4-pyridyl)-perylene-3,4,9,10-tetracarboxylic diimide (PYPER) has been found to be the most selective interactive ligand for G-quadruplex formed in the G4′-DNA structure. PYPER has shown a significant selectivity to G4′-DNA which is comprised of d(TTAGGG) repeats, known as human telomeres, in the phosphate buffer at pH 6. The absorption maximum of the PYPER/G4′-DNA complex has given bathochromic shift of 7 nm with respect to the absorption maximum of DNA-free solution of PYPER in phosphate buffer at pH 6. Fluorescence quenching experiments between PYPER and G4′-DNA show that PYPER demonstrates about a 9.3-fold selectivity for binding to G4′-DNA versus ds-DNA base pairs with the bimolecular rate constant of 0.95 × 10¹² M⁻¹ s⁻¹.     

Electrochemical Studies of the Recognition Interaction of Rhodamine B with DNA

The recognition interaction of rhodamine B (RB) with DNA was studied in pH 7.5 Britton-Robinson (B-R) buffer solution by electrochemical techniques. An irreversible oxidation peak at glassy carbon electrode was obtained at 0.92V (vs. SCE). After the addition of DNA into the RB solution, the peak current of RB decreased apparently without the shift of peak potential. The electrochemical parameters such as the charge transfer coefficient α and the electrode reaction standard rate constant ks of RB in the absence and presence of DNA were determined, which did not change, indicating that a non-electroactive complex was formed, so the concentration of RB in the solution decreased and the peak current decreased correspondingly.     

双阳离子咔唑衍生物与DNA相互作用的光谱研究

合成了一种新型的双阳离子咔唑衍生物3,6-双(1-羟乙基-4-烯基吡啶)咔唑碘盐(3,6-BHVC), 并对其进行了表征. 利用紫外-可见吸收光谱、圆二色谱、单光子和双光子荧光发射光谱探讨了该化合物与DNA的结合方式. 所有光谱测试结果表明, 该化合物在[磷酸根]/[染料]比值较低的条件下主要以插入方式与DNA结合, 在该比值较高的条件下主要以沟槽结合方式为主. 表明咔唑衍生物可以成为一种探索具有高结合能力双光子DNA探针的基本结构.