Asymmetric synthesis catalyzed by chiral ferrocenylphosphine-transition metal complexes VII. New chiral ferrocenylphosphines with C2 symmetry

A new chiral ferrocenylphosphine ligand, 2,2′-bis[1-N,N-dimethylamino)ethyl]-1,1′-bis(diphenylphosphino)ferrocene (2), which has C₂ symmetry and a functional group on the side chain, was prepared by ortho-lithiation and phosphination of 1,1′-bis[1-N,N-dimethylamino)ethyl]ferrocene followed by optical resolution; recrystallization of the diammonium salt with tartaric acid. An X-ray diffraction study of PdCl₂[(+)-2] showed that the complex has square-planar geometry with two cis chlorine and two phosphorus atoms and ligand (+)-2 has an (S) configuration on the 1-dimethylaminoethyl side chain and (R) ferrocene planar chirality.     

X-ray crystal structure analysis and atomic charges of color former and developer: 2. Color formers

The crystal and molecular structures of 2′-amino-6′-dibutylamino-3′-methylspiro[isobenzofuran-1(3H), 9′[9H]xanthen]-3-one (1), 2′-amino-6′-(N-cyclohexyl-N-methylamino)-3′-methylspiro[isobenzofuran-1(3H), 9′[9H]xanthen]-3-one (2) and 2′-(2-chlorophenyl)amino-6′-dibutylaminospiro[isobenzofuran-1(3H), 9′[9H]xanthen-3-one (3) have been determined by single-crystal X-ray diffraction analysis. Atom-atom non-bonded potential energy and semiempirical quantum chemical calculations have been performed. The xanthene rings of 1 to 3 are slightly bent and the phthalide rings are planar. The phthalide ring moieties are almost perpendicular (88.9(1)−93.5(5)°) to the xanthene rings. The bond lengths C(6)---O(2) are apparently extended from the normal C(sp³)---O (lactone) length. The temperature factors for one butyl group C(32)---C(35)) of 1 increase gradually toward the terminal carbon. The temperature factors for C(30)---C(33) of 2 indicate large vibrations and these are reflected in short bond lengths. Two butyl groups of 3 are disordered and these C---C bond lengths are short and long alternately. Atomic net charges around spirocarbon C(6) and toward N(1) to C(6) indicate the weak alternative system in the colorless form. As the xanthene ring has a planar geometry, the π electron density migration will easily occur from the auxochromes attached to the phthalide ring to the xanthene ring.     

X-ray crystal structure analysis and atomic charges of color former and developer: 2. Color formers

The crystal and molecular structures of 2′-amino-6′-dibutylamino-3′-methylspiro[isobenzofuran-1(3H), 9′[9H]xanthen]-3-one (1), 2′-amino-6′-(N-cyclohexyl-N-methylamino)-3′-methylspiro[isobenzofuran-1(3H), 9′[9H]xanthen]-3-one (2) and 2′-(2-chlorophenyl)amino-6′-dibutylaminospiro[isobenzofuran-1(3H), 9′[9H]xanthen-3-one (3) have been determined by single-crystal X-ray diffraction analysis. Atom-atom non-bonded potential energy and semiempirical quantum chemical calculations have been performed. The xanthene rings of 1 to 3 are slightly bent and the phthalide rings are planar. The phthalide ring moieties are almost perpendicular (88.9(1)–93.5(5)°) to the xanthene rings. The bond lengths C(6)---O(2) are apparently extended from the normal C(sp³---O (lactone) length. The temperature factors for one butyl group C(32)---C(35)) of 1 increase gradually toward the terminal carbon. The temperature factors for C(30)---C(33) of 2 indicate large vibrations and these are reflected in short bond lengths. Two butyl groups of 3 are disordered and these C---C bond lengths are short and long alternately. Atomic net charges around spirocarbon C(6) and toward N(1) to C(6) indicate the weak alternative system in the colorless form. As the xanthene ring has a planar geometry, the π electron density migration will easily occur from the auxochromes attached to the phthalide ring to the xanthene ring.     

Structural and spectral studies on N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea

The crystal and molecular structure of the N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea (C₁₅H₁₃N₂OSCl, M_r=304.79) is determined by X-ray diffraction. The crystal structure is monoclinic, space group: P2₁/n, a=16.097(6), b=4.5989(2), c=19.388(7) Å and β=89.299(6)° V=1434.7(9)ų, Z=4. FTIR and NMR spectra have been characterized. The interactions of intramolecular and intermolecular hydrogen bonds have been discussed. Density functional theory (DFT) (B3LYP) methods have been used to determine the structure and energies of stable conformers. Minimum energy conformations are calculated as a function of the torsion angle θ (C13–N1–C14–N2) varied every 30°. The optimized geometry corresponding to crystal structure is the most stable conformation. This has partly been attributed to intramolecular hydrogen bonds. With the basis sets of the 6-311G* quality, the DFT calculated bond parameters and harmonic vibrations are predicted in a very good agreement with experimental data.     

Structural and spectral studies of N-2-(pyridyl)-, N-2-(3-, 4-, 5-, and 6-picolyl)- and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenylthioureas

Structures of the following compounds have been obtained: N-(2-pyridyl)-N′-2-thiomethoxyphenylthiourea, PyTu2SMe, monoclinic, P2₁/c, a=11.905(3), b=4.7660(8), c=23,532(6) Å, β=95.993(8)°, V=1327.9(5) ų and Z=4; N-2-(3-picolyl)-N′-2-thiomethoxyphenyl-thiourea, 3PicTu2SeMe, monoclinic, C2/c, a=22.870(5), b=7.564(1), c=16.941(4) Å, β=98.300(6)°, V=2899.9(9) ų and Z=8; N-2-(4-picolyl)-N′-2-thiomethoxyphenylthiourea, 4PicTu2SMe, monoclinic P2₁/a, a=9.44(5), b=18.18(7), c=8.376(12) Å, β=91.62(5)°, V=1437(1) ų and Z=4; N-2-(5-picolyl)-N′-2-thiomethoxyphenylthiourea, 5PicTu2SMe, monoclinic, C2/c, a=21.807(2), b=7.5940(9), c=17.500(2) Å, β=93.267(6)°, V=2893.3(5) ų and Z=8; N-2-(6-picolyl)-N′-2-thiomethoxyphenylthiourea, 6PicTu2SMe, monoclinic, P2₁/c, a=8.499(4), b=7.819(2), c=22.291(8) Å, β=90.73(3)°, V=1481.2(9) ų and Z=4 and N-2-(4,6-lutidyl)-N′-2-thiomethoxyphenyl-thiourea, 4,6LutTu2SMe, monoclinic, P2₁/c, a=11.621(1), b=9.324(1), c=14.604(1) Å, β=96.378(4)°, V=1572.4(2) ų and Z=4. Comparisons with other N-2-pyridyl-N′-arylthioureas having substituents in the 2-position of the aryl ring are included.     

Ab initio study of 1,1-(methylphosphinylidene) bis(methanamine) and vibrational assignment of its N,N′-coordinated Pt(II) and Pd(II) chloro complexes

Infrared and Raman spectra of 1,1-(methylphosphinylidene) bis(methanamine) [mpbm, (CH₃)PO(CH₂NH₂)₂] and its N,N′-coordinated Pt(II) and Pd(II) have been studied in the 4000–200 cm⁻¹ frequency range. Ab initio calculations have been carried out for different conformations of the mpbm at HF/6-31G* level of the theory from which structural parameters, conformational stability and predicted infrared and Raman spectra have been obtained. A complete vibrational assignment of the lowest energy conformer, tttg⁻, as well as of its N,N′-coordinated Pt(II) and Pd(II) chloro-complexes was done on the basis of the calculated frequencies, relative infrared intensities, Raman activities and potential energy distribution (PED). The theoretical predictions are compared with the experimental results where appropriate.     

Structural, spectral and thermal studies of N-2-(4-picolyl)- and N-2-(6-picolyl)-N′-(2-chlorophenyl)thioureas and N-2-(6-picolyl)-N′-(2-bromophenyl)thiourea

N-2-(4-picolyl)-N′-2-chlorophenylthiourea, 4PicTu2Cl, monoclinic, P2₁/c, a=10.068(5), b=11.715(2), β=96.88(4)°, and Z=4; N-2-(6-picolyl)-N′-2-chlorophenylthiourea, 6PicTu2Cl, triclinic, P-1, a=7.4250(8), b=7.5690(16), c=12.664(3) Å, =105.706(17), β=103.181(13), γ=90.063(13)°, V=665.6(2) ų and Z=2 and N-2-(6-picolyl)-N′-2-bromophenylthiourea, 6PicTu2Br, triclinic, P-1, a=7.512(4), b=7.535(6), c=12.575(4) Å, a=103.14(3), β=105.67(3), γ=90.28(4)°, V=665.7(2) ų and Z=2. The intramolecular hydrogen bonding between N′H and the pyridine nitrogen and intermolecular hydrogen bonding involving the thione sulfur and the NH hydrogen, as well as the planarity of the molecules, are affected by the position of the methyl substituent on the pyridine ring. The enthalpies of fusion and melting points of these thioureas are also affected. ¹H NMR studies in CDCl₃ show the NH′ hydrogen resonance considerably downfield from other resonances in their spectra.     

Photochemical studies of tetra-2,3-pyridinoporphyrazines

Tetra-2,3-pyridinoporphyrazines and the corresponding water-soluble N,N′,N′′,N′′′-tetramethyl-tetra-2,3-pyridinoporphyrazine complexes, containing central metal atoms; M=Ge, Sn, Si and Zn, were synthesized and their photochemical properties were investigated. The reductive quenching of pyridinoporphyrazines excited states, enhanced relative to phthalocyanines, was considered as the first photochemical step of dyes phototransformation in dimethylformamide (DMF) and dimethylsulfoxide (DMSO) solutions under irradiation with visible light. Efficiency of singlet oxygen photosensitization decreases significantly in the row phthalocyanines, unquaternized, quaternized tetra-2,3-pyridinoporphyrazine metallocomplexes.     

Ethylene oligomerization by diimine iron(II) complexes/EAO

The catalytic properties of a series of Fe(II) diimine complexes (diimine=N,N′-o-phenylenebis(salicylideneaminato), N,N′-ethylenebis(salicylideneaminato), N,N′-o-phenylenebisbenzal, N,N′-ethylenebisbenzal) in combination with ethylaluminoxane (EAO) for ethylene oligomerization have been investigated. Treatment of the iron(II) complexes with EAO in toluene generates active catalytic systems in situ that oligomerize ethylene to low-carbon olefins. The effects of reaction temperature, ratios of Al/Fe and reaction periods on catalytic activity and product distribution have been studied. The activity of complex FeCl₂(PhCH=o-NC₆H₄N=CHPh) with EAO at 200°C is 1.35×10⁵ g oligomers/mol Fe·h, and the selectivity of C_4–10 olefins is 84.8%.     

Syntheses of mixed ligands complexes of Ru(II) with 4,4′-dicarboxy-2,2′-bipyridine and substituted pteridinedione and the use of these complexes in electrochemical photovoltaic cells

The synthesis, spectral and photoelectrochemical studies of mixed ligand complexes of [Ru(dcbpy)₂(LL)]Cl₂, where LL=2,4-(1,3-N,N′-dimethyl)pteridinedione (DMP), 6,7-dimethyl-2,4-(1,3-N,N′-dimethyl)pteridinedione (MDMP), 6,7-diphenyl-2,4-(1,3-N,N′-dimethyl)pteridinedione (PhDMP), dibenzo[h,j]-(1,3-N,N′-dimethyl)isoalloxazine (BIAlo), 6,7-bis(pyrid-2-yl)-2,4-(1,3-N,N′-dimethyl) pteridinedione (PyDMP) were carried out. These complexes were attached to sol–gel processed TiO₂ electrodes and the photocells fabricated were illuminated with polychromatic radiation in the presence of I₂/I₃⁻ as redox electrolyte. The incident photon to current conversion efficiency determined was found to be 20–48%.     

Electroabsorption study of metal-to-ligand charge transfer in an organic complex of iridium (III)

The dipole moment and polarizability changes have been determined from electroabsorption (EA) spectroscopy of solid films of fac tris(2-(phenyl)pyridinato,N,C^2′)iridium (III) [Ir(ppy)₃]. The maximum changes in the dipole moment |Δμ|_S=(5.0±0.5) D/f (f is the local field correction factor: 1.3–1.7) accompany ground state to the lowest singlet, and |Δμ|_T=(1.7±0.5) D/f ground state to the lowest triplet metal-to-ligand charge transfer (MLCT) excited states formation, while the average polarizability change ų/f² follows from the fitting procedure throughout the visible absorption spectrum range. The experimental values of |Δμ| as well as energy positions of the MLCT states correlate with the literature results of time-dependent density functional theory.     

Photolysis of benzoyl esters of 2,2′-dinitrodiphenylcarbinols in neutral and basic media

The photolysis of 2,2′-dinitrodiphenylmethylbenzoates (1a–1d) in 2-propanol gives dibenzo-[c, f]-[1,2]diazepin-11-one-oxides (5a–5d) as the major product. Dibenzo[c, f]-[1,2]diazepin-11-ones (2a–2d), 2,2′-dinitrobenzophenones (3a–3d), 2-amino-2′-nitrobenzophenones (4a–4d) and N-hydroxyacridones (6a–6d) are also formed in the reaction. When the irradiation is carried out in benzene, 3-(2′-nitrophenyl)-2,1-benzisoxazoles (7a–7d) are also obtained together with the above products.     

Second-harmonic generation from monolayer Langmuir–Blodgett films of various push–pull pyridine and terpyridine metal complexes

The new ligands (E)-4-[2-(4-(N-methyl-N-hexadecylaminophenyl)ethenyl]pyridine (L¹) and 4′-(C₆H₄-p-N(Me)(hexadecyl))-2,2′:6′,2″-terpyridine (L²) were prepared along with their complexes [cis-Ir(CO)₂ClL¹], [fac-Os(CO)₃Cl₂L¹], [ZnCl₂L²] and [IrCl₃L²]. Whereas these complexes show a large second-order nonlinear optical (NLO) response at the molecular level, similar to that of related organic alkylated salts as evidenced by the Electric Field Induced Second-Harmonic (EFISH) generation technique, their Langmuir–Blodgett (LB) film susceptibility is lower than that of the salts.     

Synthesis and purity assessment of tetra- and pentaacyl lipid A of Chlamydia containing (R)-3-hydroxyicosanoic acid

Based on structural data of lipid A from Chlamydia trachomatis strains, chemically pure tetra- and pentaacyl 1,4′-bisphosphoryl as well as the related 4′-monophosphoryl derivatives of lipid A were synthesized. (R)-3-Hydroxyicosanoic acid as a chiral constituent was prepared via Noyori-reduction of methyl-3-oxoicosanoic acid. Synthetic intermediates were O-acylated with myristoic acid residues at positions 3 and 3′ and N-acylated with (R)-3-hydroxyicosanoic acid at both glucosamine units. Efficient purification methods for highly hydrophobic long-chain tri-, tetra- and pentaacyl progenitors of lipid A have been developed. Purity and homogeneity of the synthetic target compounds were confirmed by NMR and MS-data as well as a sensitive immunostaining approach. The tetra- and pentaacyl species serve as biomedical probes to investigate the endotoxic potential of chlamydial lipid A and to clarify its role in Chlamydia associated infections.     

Synthesis, characterization and catalytic activity in Heck-type reactions of orthometallated Pd and Pt complexes derived from (1R,2R)-1,2-diaminocyclohexane

The chiral bis-imine (1R,2R)-C₆H₁₀-[E---N=CH---C₆H₃---3,4-(OMe)₂]₂ 1 (LH) reacts with [Pd(OAc)₂] (1:1 molar ratio; OAc=acetate) giving the orthometallated [Pd(OAc)(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)-C₆H₁₀---N=CH---C₆H₃-3′,4′-(OMe)₂-κ-C,N,N)] 2 (abbreviated as [Pd(OAc)(L-κ-C,N,N)]), through C---H bond activation on only one of the aryl rings and N,N-coordination of the two iminic N atoms. 2 reacts with an excess of LiCl to give [Pd(Cl)(L-κ-C,N,N)] 3. The reaction of 3 with AgClO₄ and neutral or anionic ligands L′ (1:1:1 molar ratio) affords [Pd(L-κ-C,N,N)(L′)](ClO₄) (L′=PPh₃ 4a, NCMe 5, pyridine 6, p-nitroaniline 7) or [Pd(I)(L-κ-C,N,N)] 8. Complex 4a reacts with wet CDCl₃ giving [Pd(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)---C₆H₁₀---NH₂-κ-C,N,N)(PPh₃)](ClO₄) 4b as a result of the hydrolysis of the C=N bond not involved in the orthometallated ring. The molecular structure of 4b·CH₂Cl₂ has been determined by X-ray diffraction methods. Cleavage of the Pd---N bond trans to the C_aryl atom can be accomplished by coordination of strongly chelating ligands, such as acetylacetonate (acac) or bis(diphenylphosphino)ethane (dppe), forming [Pd(acac-O,O′)(L-κ-C,N)] 9 and [Pd(L-κ-C,N)(dppe-P,P′)](ClO₄) 12, while classical N,N′-chelating ligands such as 1,10-phenantroline (phen) or 2,2′-bipyridyl (bipy) behave as monodentate N-donor ligands yielding [Pd(L-κ-C,N,N)(κ¹-N-phen)](ClO₄) 10 and [Pd(L-κ-C,N,N)(κ¹-N-bipy)](ClO₄) 11. Treatment of 1 with PtCl₂(DMSO)₂ (1:1 molar ratio) in refluxing 2-methoxyethanol gives Cl₂Pt[(NH₂)₂C₆H₁₀---N,N′] 13a and [Pt(Cl)(C₆H₂---4,5-(OMe)₂---2-CH=N-(1R,2R)---C₆H₁₀---NH₂-κ-C,N,N)] 13b, while [Pt(Cl)(L-κ-C,N,N)] 14 can be obtained by reaction of [Pt(μ-Cl)(η³-2-Me---C₃H₄)]₂ with 1 in refluxing CHCl₃. Complexes 2 and 3 catalyzed the arylation of methyl acrylate giving good yields of the corresponding methyl cinnamates and TON up to 847 000. Complex 3 also catalyzes the hydroarylation of 2-norbornene, but with lower yields and without enantioselectivity.     

Synthesis and spectroscopic analysis of tetraphenylporphyrinatoantimony(V) complexes linked to boron-dipyrrin chromophore on axial ligands

Tetraphenylporphyrinatoantimony(V) complexes, linked to boron-dipyrrin chromophores on axial ligands, were synthesized. The fluorescence spectra of 1a, 1b and 1c (3-[4-(N,N′-difluorobornyl-5-dipyrrinyl)phenyl]propoxo(methoxo)antimony(V) tetraphenylporphyrin bromide (1a); 6-[4-(N,N′-difluorobornyl-5-dipyrrinyl)phenyl]hexyloxo(methoxo)antimony(V) tetraphenylporphyrin bromide (1b); bis{3-[4-(N,N′-difluorobornyl-5-dipyrrinyl)phenyl]propoxo}antimony(V) tetraphenylporphyrin bromide (1c)) were analyzed under the excitations of N,N′-difluorobornyl-5-dipyrrinylphenyl (Bdpy) and tetraphenylporphyrinatoantimony(V) (Sb(TPP)) chromophores. Under the irradiation of Bdpy chromophore, the excitation energy was transferred from Bdpy chromophore to the Sb(TPP) moiety at 0.13–0.40 of the quantum yields, even in a polar solvent. On the other hand, the emission of Sb(TPP) chromophores was quenched by Bdpy chromophores at rate constants of 10⁸–10⁹ s⁻¹, independent of on the solvent polarity. Under the excitation of the Bdpy chromophore of 1d (3-[4-(N,N′-difluorobornyl-5-dipyrrinyl)phenyl]propoxo(phenyloxo)antimony(V) tetraphenylporphyrin bromide) involving both the Bdpy and the phenoxy chromophores on the axial ligands, the excited singlet state of the Sb(TPP) chromophore generated by the energy transfer from the Bdpy chromophore was quenched by the phenoxy ligand via non-radiative processes involving electron transfer. However, rapid back electron-transfer may occur because no absorption of the anion radical of Sb(TPP) was observed by nanosecond laser photolysis.     

Natural bond orbital analysis and vibrational spectroscopic studies of H-bonded N,N′-diphenylguanidinium nitrate

NIR-FT Raman and FT-IR spectra of the crystallized biologically active molecule N,N′-diphenylguanidinium nitrate (DGN) have been recorded and analyzed using quantum chemical computations based on density functional theory. The extraordinary basicity and strong stability of this novel bioactive compound has been discussed as the consequence of resonance stabilization leading to Y-aromaticity and hydrogen bonding. This peculiar Y-delocalization character of DGN is well reflected in the optimized geometry and bond order (BO) calculations. The observance of the equality of C–N bond lengths in the protonated species indicates delocalization of the π-electron system. The spectroscopic and natural bonds orbital (NBO) analysis confirms the occurrence of strong network of inter molecular hydrogen bonds. The changes in electron density in the global minimum and in the energy of hyperconjugative interactions of DGN calculated by second order perturbation theory have been studied extensively in comparison with the values of the neutral species. The observed characteristic ring vibrations are well fit with the theoretical values calculated at B3LYP/6-31G* level.     

The analysis of serum effects on structure, size and toxicity of DDAB-DOPE and DC-Chol-DOPE lipoplexes contributes to explain their different transfection efficiency

The effect of serum on structural properties of dimethyl-dioctadecyl-ammonium bromide (DDAB)–1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) liposomes and DDAB–DOPE/DNA lipoplexes has been investigated by energy dispersive X-ray diffraction (EDXD) technique, at different cationic lipid/DNA weight ratios (ρ). The role of serum on the size of lipoplexes has also been studied by dynamic light scattering. Lipoplex transfection efficiency (TE) as a function of ρ, and lipoplex toxicity to C6 rat glioma cells have been evaluated in Dulbecco's Modified Eagle Medium (DMEM) with and without serum. A multi-parametric analysis concerning the role of size, structure and cytotoxicity on transfection efficiency contributes to explain the experimental observation that 3β-[N-(N′,N′-dimethylaminoethane)carbamoyl]-cholesterol (DC-Chol)–DOPE/DNA transfect C6 cells better than DDAB–DOPE/DNA lipoplexes.     

Coordination geometry of tetradentate Schiff’s base nickel complexes: the effects of donors, backbone length and hydrogenation

The X-ray crystal structures of (N,N′-bis-(o-amidobenzilidene)-1,3-diaminopropane)nickel (Niambpr), (N,N′-bis-(o-amidobenzilidene)-1,4-diaminobutane)nickel (Niambut), (N,N′-bis-(o-thiobenzilidene)-1,4-diaminobutane)nickel(II) (Nitsalbut), bis-acetonitrile-(N,N′-bis-(o-aminobenzyl)-1,2-diaminoethane) nickel(II) tetrafluoroborate [Ni(H₄amben)(MeCN)₂] [BF₄]₂, bis-O-acetato-(N,N′-bis-(o-aminobenzyl)-1,2-diaminoethane) nickel(II) [Ni(H₄amben)(OAc)₂ · H₂O] and bis-O-acetato-(N,N′-bis-(o-aminobenzyl)-1,3-diaminopropane) nickel(II) [Ni(H₄ambpr)(OAc)₂] are presented. These structures complete the structural characterisation of the simple unsubstituted Schiff’s base complexes with N₄ and N₂S₂ donor sets and allow us to assess the effects of donor groups and polymethylene chain length on the coordination geometries of nickel(II). The hydrogenated N₄ complexes offer an insight into the effects of increased flexibility and character of the internal nitrogen donors. Unlike the parent N₄ imine species the hydrogenated amine species do not deprotonate at the peripheral nitrogen donors and do not seem to be restricted to the meridial plane of the nickel.     

Synthesis of isotopically labeled puromycin derivatives for kinetic isotope effect analysis of ribosome catalyzed peptide bond formation

The mechanism by which the ribosome catalyze peptide bond formation remains controversial. Here we describe the synthesis of dinucleotides that can be used in kinetic isotope effect experiments to assess the transition state of ribosome catalyzed peptide bond formation. These substrates are the isotopically labeled dinucleotide cytidylyl-(3′-5′)-3′-amino-3′-deoxy-3′-l-phenylalanyl-N⁶,N⁶-dimethyladenosine (Cm⁶A_NPhe-NH₂) and cytidylyl-(3′-5′)-3′-amino-3′-deoxy-3′-(l-2-hydroxy-3-phenylpropionyl)-N⁶,N⁶-dimethyladenosine (Cm⁶A_NPhe-OH). These substrates are active in peptide bond formation and can be used to measure kinetic isotope effects in ribosome catalyzed protein synthesis.