A 2,7-carbazole-based dicationic salt for fluorescence detection of nucleic acids and two-photon fluorescence imaging of RNA in nucleoli and cytoplasm

A new carbazole-derived dicationic compound, namely 2,7-bis(1-hydroxyethyl-4-vinylpyridinium iodine)-N-ethylcarbazole (2,7-9E-BHVC), with a large two-photon action absorption cross section in nucleic acids has been obtained. Moreover, it possesses the potential of imaging RNA in nucleoli and cytoplasm in two-photon fluorescence microscopy and exhibits good counterstain compatibility with the commercial fluorescent nucleic dye DAPI.     

Spectroscopy of conjugated polymers: phosphorescence and delayed fluorescence

We report on the observation of delayed fluorescence (DF) and phosphorescence (P) from films and dilute frozen solutions of various conjugated polymers of the PPP‐type. The materials differ with respect to the rotational freedom along the polymer backbone. Upon pulsed optical excitation into the S₁←S₀ transition of the materials, delayed emission occurs on a time scale of μs to ms in solid films at 80 K. The phosphorescence in dilute frozen solution decays monoexponentially with a radiative lifetime on the order of one second. The data analysis reveals that the DF is caused by recombination of geminate electron hole pairs rather than triplet‐triplet annihilation. This conclusion is supported by investigations of the response of the DF to an applied electric field.     

Deposition of plasma conjugated polynitrile thin films and their optical properties

The plasma polymerization of 4-phenylbenzonitrile was carried out with the objective of synthesizing a novel conjugated polynitrile thin film with a better optical property. The structure, compositions and morphology of the plasma-polymerized 4-phenylbenzonitrile (PPBPCN) thin films were investigated by Fourier transform infrared (FTIR), X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM). A fine, homogenous PPBPCN film with a large π-conjugated system and a high retention of the aromatic ring structure of the starting monomer in the deposited plasma films is obtained when a low discharge power of 30 W was used during film formation. For the first time, a blue emission with relatively high photoluminescence intensity for PPBPCN thin films was observed.     

Photophysical studies of anion-induced colorimetric response and amplified fluorescence quenching in dipyrrolylquinoxaline-containing conjugated polymers

The dipyrrolylquinoxaline (DPQ)-containing monomer and polymers were synthesized and employed as chromogenic and fluorescent chemosensors for inorganic anions. We have found that in the presence of fluoride or pyrophosphate, the receptors do not form hydrogen bonds between the pyrrole protons and anions. The colorimetric responses and fluorescence quenching in these chemosensors are indeed the result of deprotonation of the N-H proton. The anion selectivity is primarily determined by the relative basicity of anions. The sensitivity of DPQ-based chemosensor was found to display a 34-fold enhancement by incorporation into the conjugated polymer. The anion-induced deprotonation generates low-energy, non-fluorescent trapping sites and is responsible for the signal amplification where the quenching of the excited state occurs from the deprotonated DPQ site in the network by rapid exciton migration along the polymeric backbone.     

Coverage-mediated suppression of blinking in solid state quantum dot conjugated organic composite nanostructures

Size-correlated single-molecule fluorescence measurements on CdSe quantum dots functionalized with oligo(phenylene vinylene) (OPV) ligands exhibit modified fluorescence intermittency (blinking) statistics that are highly sensitive to the degree of ligand coverage on the quantum dot surface. As evidenced by a distinct surface height signature, fully covered CdSe-OPV nanostructures (approximately 25 ligands) show complete suppression of blinking in the solid state on an integration time scale of 1 s. Some access to dark states is observed on finer time scales (100 ms) with average persistence times significantly shorter than those from ZnS-capped CdSe quantum dots. This effect is interpreted as resulting from charge transport from photoexcited OPV into vacant trap sites on the quantum dot surface. These results suggest exciting new applications of composite quantum dot/organic systems in optoelectronic systems.     

Redistribution of emitting state population in conjugated polymers probed by single-molecule fluorescence polarization spectroscopy

Fluctuations in the fluorescence polarization degree and direction are reported for the first time for single conjugated polymer molecules embedded in a polystyrene matrix at room temperature. The polymer molecule, a polythiophene derivative, clearly emits as a multi-chromophore ensemble showing that the energy does not funnel to any specific low-energy trap. The fluorescence instead originates from thermally populated exciton states with different relative orientations of the transition dipole moments. The fluctuations in the fluorescence polarization are explained in terms of changes in the relative contributions of the different exciton states to the signal due to conformational fluctuations of the molecule or selective exciton quenching by triplet states.     

CdTe quantum dots as fluorescence sensor for the determination of vitamin B6 in aqueous solution

A novel, rapid and simple CdTe quantum dots （QDs） based technology platform was established for selective and sensitive determination of vitamin B6 in aqueous solution. It can perform accurate and reproducible quantification of vitamin B6 in pharmaceutical with satisfactory results.     

Langmuir-Blodgett thin films of quantum dots: synthesis, surface modification, and fluorescence resonance energy transfer (FRET) studies

We describe herein studies on as-prepared hydrophobic ZnS-CdSe quantum dots (QDs) at the air-water interface. Surface pressure-area (pi-A) isotherms have been used to study the monolayer behavior. Uniform, lamellar multilayer thin films of QDs were deposited by the Langmuir-Blodgett (LB) technique. The role of two different surfactant systems commonly employed in the synthesis of these QDs (trioctylphosphine oxide-octadecylamine (TOPO-ODA) system and trioctylphosphine oxide-tetradecylphosphonic acid (TOPO-TDPA) system) on the monolayer behavior and the quality of thin films produced has been investigated. The thin films were characterized by quartz crystal microgravimetry (QCM), contact angle measurements, fluorescence spectroscopy, and transmission electron microscopy (TEM). These QD films were further modified by an amphiphilic polymer, poly(maleic anhydride-alt-1-tetradecene) (PMA). The hydrophobic interaction between the polymers and the surfactants attached to the QDs drove the self-assembly process. The carboxylic acid functional groups in the polymer were also used to immobilize avidin. We have demonstrated a proof of concept for the biosensing strategy wherein the avidin-coated QD films attracted biotinylated gold nanoparticles, resulting in fluorescence resonance energy transfer (FRET) quenching of the thin films.     

Nanoscale co-organization of quantum dots and conjugated polymers using polymeric micelles as templates

Hierarchical organization of light-absorbing molecules is integral to natural light harvesting complexes and has been mimicked by elegant chemical systems. A challenge is to attain such spatial organization among nanoscale systems. Interactions between nanoscale systems, e.g., conjugated polymers, carbon nanotubes, quantum dots, and so on, are of interest for basic and applied reasons. However, typically the excited-state interactions and dynamics are examined in rather complex blends, such as cast films. A model system with complexity intermediate between a film and a supramolecular system would yield helpful insights into electronic energy and charge transfer. Here, we report a simple and versatile approach to achieving spatially defined organization of colloidal CdSe, CdSe/ZnS core/shell, or PbS nanocrystals (quantum dots) with poly(3-hexylthiophenes) (P3HTs) using micelles of poly(styrene-b-4-vinylpyridine) (PS-b-P4VP) as the main structural motif. We compare the characteristics of this system to those of natural light-harvesting complexes. Bulk heterojunction films (and related systems) are characterized by electronic interactions, and therefore dynamics of charge and energy transfer, at interfaces rather than between specific donor-acceptor molecules. Owing to structural disorder, such systems are inherently complex. Therefore, we expect that the spatially defined organization of the active components in the present system provides new opportunities for studying the complicated photophysics intrinsic to blends of nanoscale systems, such as bulk heterojunctions by establishing simplified and better controlled interfaces.     

Study of solid state reactions in Nb/Al multilayer thin films

Solid state reactions of sputter-deposited Nb/Al multilayer thin films, with periodicities in the range 10–333 nm, have been studied by differential scanning calorimetry. The first phase to form upon annealing the films in NbAl₃. Constant-heating-rate calorimetric measurements show the presence of two peaks for the formation of this phase, while isothermal scans reveal that the first peak is associated with a nucleation and growth type transformation. The formation of NbAl₃ is thus interpreted as a two-stage process of nucleation and growth to coalescence (first peak) followed by growth until the consumption of one or both reactants (second peak).We thank NSF for support through DMR-9308651, K. Coffey, S. Vivekanand and B. Gadicharla for assistance and TA Instruments for the donation of a 1600°C furnace.     

Modern solid state NMR techniques and concepts in structural studies of synthetic polymers

In this mini‐review, we present the solid state nuclear magnetic resonance (NMR) methods which trace the new tendency in structural studies of synthetic polymers. The review is organized into three sections. In the first part, short theoretical background and introduction to very fast magic angle spinning NMR technique with sample rotation 60 kHz are shown. The second part presents method for enhancing the sensitivity of NMR experiments by application of dynamic nuclear polarization magic angle spinning technique. In the third section, the power of the NMR crystallography approach which can be used for fine refinement of polymers structure on the atomic level is discussed. Copyright © 2016 John Wiley & Sons, Ltd.     

Kinetics of photochromic conversion at the solid state: quantum yield of dithienylethene-based films

Quantum yield is one of the most important properties of photochromic systems. Unfortunately, a lack of data at the solid state exists, because measurements are intrinsically not straightforward. A kinetic model describing the conversion of the photoactive species is reported and both analytic and numeric solutions are provided according to relevant cases. The model is then applied to measure the quantum yield of dithienylethene-based polymers; the ring-opening quantum yield is measured for different laser beam profiles (i.e., Gaussian and uniform) and at different wavelengths, showing an increased value with increasing photon energy.     

Two-site ionic labeling with pyranine: implications for structural dynamics studies of polymers and polypeptides by time-resolved fluorescence anisotropy

Time-resolved fluorescence anisotropy (TRFA) is widely used to study dynamic motions of biomolecules in a variety of environments. However, depolarization due to rapid side chain motions often complicates the interpretation of anisotropy decay data and interferes with the accurate observation of segmental motions. Here, we demonstrate a new method for two-point ionic labeling of polymers and biomolecules that have appropriately spaced amino groups using the fluorescent probe 8-hydroxyl-1,3,6-trisulfonated pyrene (pyranine). TRFA analysis shows that such labeling provides a more rigid attachment of the fluorophore to the macromolecule than the covalent or single-point ionic labeling of amino groups, leading to time-resolved anisotropy decays that better reflect the backbone motion of the labeled polymer segment. Optimal coupling of pyranine to biomolecule dynamics is shown to be obtained for appropriately spaced Arg groups, and in such cases the ionic binding is stable up to 150 mM ionic strength. TRFA was used to monitor the behavior of pyranine-labeled poly(allylamine) (PAM) and poly-d-lysine (PL) in sodium silicate derived sol-gel materials and revealed significant restriction of backbone motion upon entrapment for both polymers, an observation that was not readily apparent in a previous study with entrapped fluorescein-labeled PAM and PL. The implications of these findings for fluorescence studies of polymer and biomolecule dynamics are discussed.     

Photodynamics and time-resolved fluorescence of azobenzene in solution: a mixed quantum-classical simulation

We have simulated the photodynamics of azobenzene by means of the Surface Hopping method. We have considered both the trans → cis and the cis → trans processes, caused by excitation in the n → π* band (S(1) state). To bring out the solvent effects on the excited state dynamics, we have run simulations in four different environments: in vacuo, in n-hexane, in methanol, and in ethylene glycol. Our simulations reproduce very well the measured quantum yields and the time dependence of the intensity and anisotropy of the transient fluorescence. Both the photoisomerization and the S(1) → S(0) internal conversion require the torsion of the N═N double bond, but the N-C bond rotations and the NNC bending vibrations also play a role. In the trans → cis photoconversion the N═N torsional motion and the excited state decay are delayed by increasing the solvent viscosity, while the cis → trans processes are less affected. The analysis of the simulation results allows the experimental observations to be explained in detail, and in particular the counterintuitive increase of the trans → cis quantum yield with viscosity, as well as the relationship between the excited state dynamics and the solvent effects on the fluorescence lifetimes and depolarization.     

Steady state and time-resolved fluorescence study of isoquinoline: reinvestigation of excited state proton transfer

In the present work we report some hitherto unnoticed features in the steady state and time-resolved measurements of isoquinoline in water and trifluoroethanol (TFE). Absorption spectra reveal that in water, neutrals as well cationic species are present. Emission spectrum shows structured features at shorter wavelengths accompanied with a broad band around 375 nm, which correspond to neutrals and cations respectively. However, time-resolved data indicate that protonation does not take place in the excited state in water. On the contrary, in stronger hydrogen bonding solvent TFE, distribution of decay components is observed and at longer wavelengths a small rise time is present. This is ascribed to neutral and cation-like species present in the ground as well as in the excited state. The difference in the results is explained in terms of different excited state potential energy surfaces for water and TFE; particularly, the presence of a rather small barrier for protonation in case of TFE.     

Vibrational spectra of isomeric pyridinic carboxylic acids in solid state and in solution and their SERS studies in silver sol

Raman spectroscopic studies of three isomeric pyridinic carboxylic acids, viz. picolinic, nicotinic and iso-nicotinic acid in solid state, in aqueous solution and in silver hydrosol, in the frequency range 900–1750 cm⁻¹, have been made. Assignments of the observed bands have been proposed in relation to the molecular forms present in solid state and in solution. Different degrees of intensity enhancements of the Raman bands in surface-enhanced Raman scattering (SERS) have been observed in all the three isomeric molecules. In iso-nicotinic acid, the intensity enhancement has been found to be minimum. Comparisons of Raman spectra in aqueous solution with those due to SERS in silver sol indicate that picolinic and nicotinic acid adsorb perpendicularly to the sol surface whereas in iso-nicotinic acid it occurs via donation of a π-electron of the aromatic ring, i.e. the plane of the ring lies parallel to the surface of the sol.     

Luminescence studies in polymers—XI: Acenaphthylene polymers and copolymers with methylmethacrylate: polarization,yield and decay of the fluorescence as a function of temperature in solution

For polymers of acenaphthylene and copolymers with methylmethacrylate measurement of the polarization of the fluorescence in glassy solution at 77K has been combined with analysis of the intensity and decay of excimer and monomer fluorescence over a large temperature range. Activation energies and frequency factors corresponding to several photophysical processes have been determined and compared with those reported previously for I-vinylnaphthalene polymer and copolymers.