Guanidine-equipped thiacalix[4]arenes: synthesis,interaction with DNA and aggregation properties

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Donor-acceptor copolymers from cyclopentannulation polymerizations with dicyclopenta[cd,jk]pyrene and dicyclopenta[cd,lm] perylene acceptors

A series of donor-acceptor copolymers with dicyclopenta[cd,jk]pyrene and dicyclopenta[cd,lm]perylene acceptor units was prepared via palladium catalyzed cyclopenta-annulation reactions. The acceptor units were paired with diethynyl containing donor groups based on benzo[1,2-b:4,5-b’]dithiophene, thieno[3,2-b]thiophene, and 4-octyl-4H-dithieno[3,2-b:2′,3′-d]pyrrole to create six polymer variants. The cyclopentannulation polymerization resulted in copolymers with molecular weights (Mn) of 6–14 kDa and broad light absorption in the visible region with band gaps of 1.38–1.85 eV. The synthetic methodology, as well as optoelectronic properties, including thin-film absorption and cyclic voltammetry, of the donor-acceptor copolymers are presented.     

Mononuclear [NiII(L)(P-(o-C6H4S)2(o-C6H4SH))]0/1- (L = thiolate, selenolate, PPh3, and Cl) complexes with intramolecular [Ni...S...H...S]/[Ni...H...S] interactions modulated by the coordinated ligand L: relevance to the [NiFe] hydrogenases

The shift of the IR nu(S)(-)(H) frequency to lower wavenumbers for the series of complexes [Ni(II)(L)(P-(o-C6H4S)2(o-C6H4SH))]0/1- (L = PPh3 (1), Cl (6), Se-p-C6H4-Cl (5), S-C4H3S (7), SePh (4)) indicates that a trend of increasing electronic donation of the L ligands coordinated to the Ni(II) center promotes intramolecular [Ni-S...H-S] interactions. Compared to the Ni...S(H) distance, in the range of 3.609-3.802 A in complexes 1 and 4-7, the Ni...S(CH3) distances of 2.540 and 2.914 A observed in the [Ni(II)(PPh3)(P(o-C6H4S)2(o-C6H4-SCH3))] complexes (8a and 8b, two conformational isomers with the chemical shift of the thioether methyl group at delta 1.820 (-60 degrees C) and 2.109 ppm (60 degrees C) (C4D8O)) and the Ni...S(CH3) distances of 3.258 and 3.229 A found in the [Ni(II)(L)(P(o-C6H4S)2(o-C6H4-SCH3))]1- complexes (L = SPh (9), SePh (10)) also support the idea that the pendant thiol protons of the Ni(II)-thiol complexes 1/4-7 were attracted by both the sulfur of thiolate and the nickel. The increased basicity (electronic density) of the nickel center regulated by the monodentate ligand attracted the proton of the pendant thiol effectively and caused the weaker S...H bond. In addition, the pendant thiol interaction modes in the solid state (complexes 1a and 1b, Scheme 1) may be controlled by the solvent of crystallization. Compared to complex 1a, the stronger intramolecular [Ni-S...H-S] interaction (or a combination of [Ni-S...H-S]/[Ni...H-S] interactions) found in complexes 4-7 led to the weaker S-H bond strength and accelerated the oxidation (by O2) of complexes 4-7 to produce the [Ni(Y)(L)(P(o-C6H4S)3)]1- (L = Se-p-C6H4-Cl (11), SePh (12), S-C4H3S (13)) complexes.     

DFT-based pseudo-Jahn-Teller coupling studies on the steric and energetic lone pair effect of four- and five-coordinate halide molecules and complexes with central ions from the fifth, sixth, and seventh main groups

The energetical and stereochemical effect of the s(2) lone pair in the title molecules and complexes is investigated using a pseudo-Jahn-Teller coupling model with parameters adjusted to energies and wave functions from DFT calculations. Vibronic coupling parameters were calculated and compared with those of the coordination number (CN) 3. Inspecting the correlation between the chemical hardness and the vibronic coupling energy (hardness rule), it is found that the tendency to distort decreases with increasing CN. While all considered molecules AX(3) (A(III) = P to Bi; X(-) = F to I) undergo lone pair deformations (D(3h)---> C(3v)), only part of the AX(4)(-) and BX(4) species (B(IV) = S to Po) do so (T(d)---> C(2v)-and even less the ones with CN = 5 (D(3h)---> C(2v) (congruent with C(4v)), AX(5)(2-), BX(5)(-), and CF(5) (C(V); Cl to I). The distorted polyhedra of minimum energy possess usually the butterfly C(2v) shape (CN = 4, tau(2)(zeta) displacement path) and a C(2v) = C(4v)geometry (CN = 5, epsilon' (epsilon) distortion path). A further symmetry lowering to C(s) occurs, if the central ion becomes too small with respect to the ligands (ionic size influence, PCl(Br)(4)(-), PCl(5)(2-)), with the tendency to reduce the CN toward 3 + 1 and 4 + 1, respectively. For CN = 4 the various stationary points of, for example, compressed and elongated C(3v), C(4v), etc. in the multidimensional ground-state potential surface have been characterized. Though of higher energy than the absolute C(2v) minimum, they are shown to govern the dynamics and reactivity of the CN = 4 species to a large extent. To simulate the chemical environment (positively charged counterions, polar solvents), the DFT calculations were performed using the polarizable continuum model COSMO (conductor-like screening model). Though the electronic energy gain upon distortion is not significantly affected by the solvent, the total stabilization energy is distinctly enhanced, frequently leading to lone pair deformations of otherwise electronically stable species. All results obtained by the combined vibronic/DFT approach are well in accord with available experimental data.     

In vitro translation with [<Superscript>34</Superscript>S]-labeled methionine,selenomethionine, and telluromethionine

Heteroisotope and heteroatom tagging with [³⁴S]-enriched methionine (Met), selenomethionine (SeMet), and telluromethionine (TeMet) was applied to in vitro translation. Green fluorescent protein (GFP) and JNK stimulatory phosphatase-1 (JSP-1) genes were translated with wheat germ extract (WGE) in the presence of Met derivatives. GFPs containing Met derivatives were subjected to HPLC coupled with treble detection, i.e., a photodiode array detector, a fluorescence detector, and an inductively coupled plasma mass spectrometer (ICP-MS). The activities of JSP-1-containing Met derivatives were also measured. GFP and JSP-1 containing [³⁴S]-Met and SeMet showed comparable fluorescence intensities and enzyme activities to those containing naturally occurring Met. TeMet was unstable and decomposed in WGE, whereas SeMet was stable throughout the experimental period. Thus, although Te was the most sensitive to ICP-MS detection among S, Se, and Te, TeMet was less incorporated into the proteins than Met and SeMet. Finally, the potential of heteroisotope and heteroatom tagging of desired proteins in in vitro translation followed by ICP-MS detection was discussed. Figure TeMet was less incorporated into GFP than Met and SeMet due to its instability in WGE     

Complex of 1-hexadecyl-4-aza-1-azoniabicyclo[2.2.2]octane bromide with copper dibromide: structure,aggregation, and biological activity

Russian Chemical Bulletin - The aggregation and adsorption properties of a new complex of 1-hexadecyl-4-aza-1-azoniabicyclo[2.2.2]octane bromide with copper dibromide were studied by methods of...     

Regioselective reactions of 1-alkylidene-2-oxyallyl cations with furan: control of [4 + 3] cycloaddition, [3 + 2] cycloaddition, and electrophilic substitution

The ring opening of alkylidenecyclopropanone acetal under acidic conditions produces the 1-alkylidene-2-oxyallyl cation as an intermediate, which reacts with furan to give the [3 + 2] and [4 + 3] cycloadducts as well as an electrophilic substitution product. The product distribution is controlled by the oxy substituents of the cation and by the solvent employed.     

Direct arylation of imidazo[1,2-a]pyridine at C-3 with aryl iodides, bromides, and triflates via copper(I)-catalyzed C-H bond functionalization

A convenient method for the copper(I)-catalyzed arylation of substituted imidazo[1,2-a]pyridine has been developed. This method is applicable to a variety of aryl electrophiles, including bromides, iodides, and triflates. It represents the first general process for C-3 arylation of substituted imidazo[1,2-a]pyridine by Cu(I) catalysis to construct various functionalized imidazo[1,2-a]pyridine core π-systems.     

Synthesis, characterization, mechanochromism and photochromism of [Fe(dm4bt)3][FeCl4]2 and [Fe(dm4bt)3][FeBr4]2, along with the investigation of steric influence on spin state

The complexes [Fe(dm4bt)(3)][FeCl(4)](2) (1) and [Fe(dm4bt)(3)][FeBr(4)](2) (2) were prepared from the reaction of 2,2'-dimethyl-4,4'-bithiazole (dm4bt) with FeCl(3)·6H(2)O and FeBr(3), respectively, in methanol. Both complexes were characterized by IR, UV-Vis and (1)H NMR spectroscopy and their structures were studied by single-crystal diffraction. The methylated bithiazole led to high spin Fe(II) centers in the octahedral cation part of complexes 1 and 2 with Fe-N distance of 2.220 ?, in spite of the low spin octahedral Fe(II) complexes with unsubstituted bithiazole ligands. Crystal structure determination of 2 was performed at 90, 120 and 298 K. Temperature reduction to 90 K resulted in a decrease in the Fe-N bond length to 2.206 ? which is still in the range of high spin Fe(II). Complex 1 shows a reversible mechanochromic effect from the crystalline phase to powder form from red to yellow; it also displays reversible photochromism from yellow to green in solution under sunlight. The magnetic behaviour of the complexes was also studied at 2-300 K. The temperature dependence of χ(m)T curves for the two forms of 1, crystal and powder, demands some changes in their magnetic behavior, causing different colors i.e. red and yellow. At low temperatures, χ(m)T decreases where the decrease starts at around 65 K for compound 1, and at around 100 K for compound 2, due to different counterions. The two complexes exhibit antiferromagnetism at around 4 K.     

Synthesis,characterization, and DNA binding of ruthenium(II) complexes with 2-benzo[b] furan-2-yl-1H-imidazo[4,5f][1,10]phenanthroline as an intercalative ligand

DNA-binding properties of a number of ruthenium complexes with different polypyridine ligands are reported. The new polypyridine ligand BFIP (=2-benzo[b] furan-2-yl-1H-imidazo[4,5-f][1,10]phenanthroline) and its ruthenium complexes [Ru(bpy)₂BFIP]²⁺ (bpy = 2,2′-bipyridine), [Ru(dmb)₂BFIP]²⁺ (dmb = 4,4′-dimethyl-2,2′-bipyridine), and [Ru(phen)₂BFIP]²⁺ (phen = 1,10-phenanthroline) have been synthesized and characterized by elemental analysis, mass spectra, IR, UV-Vis, ¹H- and ¹³C-NMR, and cyclic voltammetry. The DNA binding of these complexes to calf-thymus DNA (CT-DNA) was investigated by spectrophotometric, fluorescence, and viscosity measurements. The results suggest that ruthenium(II) complexes bind to CT-DNA through intercalation. Photocleavage of pBR 322 DNA by these complexes was also studied, and [Ru(phen)₂BFIP]²⁺ was found to be a much better photocleavage agent than the other two complexes.     

Novel vic-dioxime ligand containing calix[4]pyrrole moiety: synthesis,characterization, anion binding studies and complexation with Ni(II)

A new vic-dioxime functionalized calix[4]pyrrole was synthesized from anti-chloroglyoxime and 4-aminophenyl-calix[4]pyrrole at room temperature. The Ni(II) complex has been prepared by reacting the ligand with NiCl₂·6H₂O in ethanol. These receptors were characterized by elemental analyses, ¹H and ¹³C NMR spectra, IR and mass spectra. Electrochemical properties of the ligand, and its Ni(II) complex were investigated in CH₂Cl₂ solution by cyclic voltammetry at 100 mV s^?1 scan rate. Anion-binding studies were carried out using UV–Vis, and ¹H NMR titrations, revealed that the Ni(II) complex exhibits selective recognition toward F^? over other anions. The selectivity for F^– among the halides is attributed mainly to the hydrogen-bond interaction of the receptor with F^–. Receptor showed colour change from red to brown in the presence of tetrabutylammonium fluoride (TBAF) with 1:2 stoichiometry.     

Design,Synthesis of New 1,2,4-Triazole/1,3,4-Thiadiazole with Spiroindoline,Imidazo[4,5-b]quinoxaline and Thieno[2,3-d]pyrimidine from Isatin Derivatives as Anticancer Agents

The current work aims to design and synthesis a new series of isatin derivatives and greatly enhances their cytotoxic activity. The derivatives 3-((bromophenyl) imino)-1-(morpholino (pyridine) methyl) indolin-2-one, 2-((oxoindoline) amino) benzoic acid, 3-(thiazolo-imino) indolinone, ethyl-2-((oxoindolin-3-ylidene)amino)-benzothiophene-3-carboxylate, 1-(oxoindoline)-benzo[4,5] thieno [2,3-d]pyrimidin-4(1H)-one, ethyl-2-(2-oxoindoline) hydrazine-1-carboxylate, N-(mercapto-oxo-pyrimidine)-2-(oxoindoline) hydrazine-1-carboxamide, N-(oxo-thiazolo[3,2-a] pyrimidine)-2-(oxoindolin-ylidene) hydrazine-carboxamide, 3-((amino-phenyl) amino)-3-hydroxy- indolinone, 3-((amino-phenyl) imino)-indolinone, 2-(2-((oxoindoline) amino) phenyl) isoindolinone, 2-(oxoindoline) hydrazine-carbothioamide, 5′-thioxospiro[indoline-3,3′-[1,2,4]triazolidin]-one, 5′-amino-spiro[indoline-3,2′-[1,3,4]thiadiazol]-2-one and 3-((2-thioxo-imidazo[4,5-b]quinoxaline) imino) indolinone were synthesized from the starting material 1-(morpholino (pyridine) methyl) indoline-2,3-dione and evaluated for their in vitro cytotoxic activity against carcinogenic cells. The new chemical structures were evidenced using spectroscopy (IR, NMR and MS) and elemental analysis. The results show that compounds imidazo[4,5-b]quinoxaline-indolinone, thiazolopyrimidine-oxoindoline, pyrimidine-oxoindoline-hydrazine-carboxamide, spiro[indoline-3,2′-[1,3,4] thiadiazol]-one and spiro[indoline-3,3′-[1,2,4]triazolidin]-one have excellent anti-proliferative activities against different human cancer cell lines such as gastric carcinoma cells (MGC-803), breast adenocarcinoma cells (MCF-7), nasopharyngeal carcinoma cells (CNE2) and oral carcinoma cells (KB).     

[1+1] and [2+2] crown ethers derived from N,N-bis(2-hydroxyalkylbenzyl)alkylamine and their inclusion phenomena with metal ions

N,N-bis(2-hydroxyalkylbenzyl)alkylamine (HBA) is a derivative obtained from a single time ring opening of benzoxazines. For HBA with methyl group at ortho and para positions, and at N atom, the reaction between this derivative and ditosylated compound gives [1+1] dibenzo-monoaza-crowns. For HBA without methyl group at ortho position, the compound gives [2+2] macrocyclic ethers. The studies on inclusion phenomena using Pedersen’s and molar ratio techniques clarify the alkali metal ion guest inclusion to be 2:1 for [2+2] and 5:2 for [1+1] macrocycles.     

Influence of solvent and weak C-H...O contacts in the self-assembled [Pt2M4{CC(3-OMe)C6H4}8] (M = Cu, Ag) clusters and their role in the luminescence behavior

New alkynyl complexes [Pt2M4{CC(3-OMe)C6H4}8] (M = Ag 1, Cu 2) have been synthesized and their structures and properties compared to those of related [Pt2M4(CCPh)8] compounds. For the Pt-Ag derivatives, the X-ray structures of the discrete yellow solvate monomer, [Pt2Ag4{CC(3-OMe)C6H4}8].2THF ([1.2THF]), and the dark garnet unsolvated polymeric form, [Pt2Ag4{CC(3-OMe)C6H4}8](infinity) ([1](infinity)), are presented. The yellow form ([1.2THF]) exhibits a distorted octahedral geometry of the metal centers with the platinum atoms mutually trans and the four silver atoms in the equatorial plane. Pairs of Ag atoms are weakly bridged by THF molecules [mu-Ag2...O(THF)]. The garnet form ([1](infinity)) has an unprecedented infinite stacked chain of octahedral clusters linked by short Pt...Pt bonds (3.1458(8) A). In both forms, different types of weak C-H...O (OMe) hydrogen bonds are observed. For comparative purposes, we have also provided the crystal structures of the yellow monomer form, [Pt2Ag4-(CCPh)8].CHCl3, and the red dimer form, [Pt2Ag4(CCPh)8]2 (Pt-Pt 3.221(2) A). These clusters display intense photoluminescence in both solution and the solid state, at room temperature and 77 K. The emission observed for the yellow form [1.2THF] in the solid state is assigned to a 3MLM'CT [Pt(d)/pi(CCR) --> Pt(p(z))/Ag(sp)/pi(CCR)] state modified by Pt...Ag, Ag...Ag, and Ag...(THF) contacts. However, in the garnet form [1](infinity) and in 2, the emissions are related to the axial Pt-Pt bonds and are assigned as phosphorescence from a metal-metal-to-ligand charge-transfer (3MMLCT) excited state ([1](infinity)), or an admixture of a metal-metal (Pt-Pt) centered 3(dsigmap(z)sigma) and 3MMLCT excited state (2). For 1, a remarkable quenching and a shift to higher energies in the emission is observed on changing from CH2Cl2 to THF, and for both 1 and 2, the emission spectra at 77 K varies with the concentration, showing their tendency to stack even in glass.     

X-ray, 31P CP/MAS,and single-crystal NMR studies,and 31P DFT GIAO calculations of inclusion complexes of bis[6-O,6-O'-(1,2:3,4- diisopropylidene-alpha-D-galactopyranosyl)thiophosphoryl] disulfide: the importance of C-H...S=P contacts in the solid state

Bis[6-O,6-O'-(1,2:3,4-diisopropylidene-alpha-D-galactopyranosyl) thiophosphoryl] disulfide shows a strong tendency to form inclusion compounds. The crystal and molecular structure of eight different solvates was established by X-ray analysis. The results indicate three different types of disulfide arrangements in the crystal lattice. By means of 31P CP/MAS NMR experiments the principal values delta 11, delta 22, and delta 33 of the 31P chemical shift tensor were obtained for each form. The orientation of its principal axes with respect to a molecular frame was investigated by means of 31P CP and single-crystal NMR for the complex with propan-2-ol. The principal axis 1 of both chemically equivalent phosphorus atoms is nearly parallel to the P-S bond and the principal axis 3 is very close to the P=S bond. DFT GIAO calculations of the model compound (EtO)2(S)P1SSP2(S)-(OEt)2 allowed assignment of the experimental chemical shift curves to the magnetically nonequivalent atoms P1 and P2. The maximum difference between calculated angles [symbol: see text] i-P-X)calcd and experimental angles [symbol: see text] i-P-X)exptl is 8.3 degrees and the rms distance 3.8 degrees (i = principal axes 1, 2, 3; X = S, -S-, -O1-, -O2-). The influence of C-H...S weak hydrogen bonding on phosphorus shielding was tested theoretically (31P DFT GIAO) employing the dimethoxythiophosphoryl disulfide.CH4 complex as a model compound. The sensitivity of 31P delta ii parameters to intermolecular forces is demonstrated.     

Synthesis, properties, and redox behavior of mono-, bis-, and tris[1,1,4,4,-tetracyano-2-(1-azulenyl)-3-butadienyl] chromophores binding with benzene and thiophene cores

Mono-, bis-, tris-, and tetrakis(1-azulenylethynyl)benzene and mono- and bis(1-azulenylethynyl)thiophene derivatives 5-10 have been prepared by Pd-catalyzed alkynylation of ethynyl arenes with 1-iodoazulene derivative or the 1-ethynylazulene derivative with tetraiodobenzene and iodothiophenes under Sonogashira-Hagihara conditions. Compounds 5-10 reacted with tetracyanoethylene in a [2+2] cycloaddition reaction to afford the corresponding 1,1,4,4,-tetracyano-2-(5-isopropyl-3-methoxycarbonyl-1-azulenyl)-3-butadienyl chromophores 12-16 in excellent yields, except for the reaction of the tetrakis(1-azulenylethynyl)benzene derivative. 1,1,4,4,-Tetracyano-2,3-bis(1-azulenyl)butadiene (17) was also prepared by the similar reaction of bis(1-azulenyl)acetylene (11) with tetracyanoethylene (TCNE). The redox behavior of novel azulene derivatives 12-17 was examined by cyclic voltammetry (CV) and differential pulse voltammetry (DPV), which revealed multistep electrochemical reduction properties. Moreover, a significant color change was observed by visible spectroscopy under electrochemical reduction conditions.     

Penicillones A and B, two novel polyketides with tricyclo [5.3.1.0] undecane skeleton, from a marine-derived fungus Penicillium terrestre

Two novel polyketides, penicillones A (1) and B (2), with tricyclo [5.3.1.0^3,8] undecane skeleton, were isolated from Penicillium terrestre. Their structures and relative stereochemistries were determined on the basis of spectroscopic methods. The absolute configuration of 2 was established by the modified Mosher’s method, while that of 1 was deduced from the similar CD absorptions of 1 and 2. Compound 1 showed weak cytotoxicities against P338 and A-549 cell lines, while 2 was inactive against P388.