Structure elucidation of highly condensed stilbenoids: chiroptical properties and absolute configuration

We investigated the potential roles of the skeleton-based comparative study of electronic circular dichroism (ECD) spectra for an application of absolute configuration (AC) determination of oligostilbenoids (OS). This approach was ultimately achieved followed by the isolation and elucidation of relative configuration (RC) of upunaphenol Q (1) (new compound) and vateriaphenol A (2), namely two octamers are dimeric tetramers of resveratrol (Res). The common building blocks (BB) provide further insight into how smaller OS are apparently conserved during downstream metabolites, as well as providing additional impetus to resolve AC of highly condensed stilbenoids (HCS). They also underline the importance of studies on determination of AC of common BB in the chemical library and to provide chiroptical properties.     

Outstanding Chiroptical Properties: A Signature of Enantiomerically Pure Alleno–Acetylenic Macrocycles and Monodisperse Acyclic Oligomers

A second series of shape‐persistent alleno–acetylenic macrocycles and monodisperse acyclic oligomers with conformationally less flexible backbones were synthesized in enantiomerically pure form by short, high‐yielding routes starting from optically active 1,3‐diethynylallenes. All seven stereoisomers—two pairs of enantiomers and three achiral stereoisomers—in the macrocyclic series were separated and configurationally assigned. The electronic circular dichroism (ECD) spectra of the D₂‐symmetric, (P,P,P,P)‐ and (M,M,M,M)‐configured macrocycles display remarkably intense chiroptical responses. A strong amplification of chirality is observed in the acyclic oligomeric series. Their preference for helical secondary structures of one handedness was supported by X‐ray analysis and computational studies. This new set of data provides proof that outstanding ECD responses are a hallmark of alleno–acetylenic macrocyclic and acyclic oligomeric chromophores.     

Enantiopure Laterally Functionalized Alleno–Acetylenic Macrocycles: Synthesis,Chiroptical Properties,and Self‐Assembly in Aqueous Media

A family of shape‐persistent alleno–acetylenic macrocycles (SPAAMs), peripherally decorated with structurally diverse pendant groups, has been synthesized and characterized in enantiomerically pure form. Their electronic circular dichroism (ECD) spectra feature a strong chiroptical response, which is more than two times higher than for open‐chain tetrameric analogues. A water‐soluble oligo(ethylene glycol)‐appended SPAAM undergoes self‐assembly in aqueous solution. Morphology studies by cryogenic transmission electron microscopy (cryo‐TEM) revealed the formation of aggregates with fibrous fine structures that correspond to tubular, macrocyclic stacks.     

Functionalized poly(phenylene‐alt‐bithiophenes): Synthesis,chiroptical properties,and interaction with chiral amines

New functionalized, (a)chiral poly(phenylene‐alt‐bithiophene)s were prepared and their chiroptical properties were studied. The polymers were prepared by a Stille coupling reaction and were functionalized with protected carboxylic acid and amino functions (tert‐butyl ester and BOC respectively). The polymers are present as well conjugated rigid rods in solution, which (chirally) aggregate in nonsolvents and film. In a next step, the protecting group (tert‐butyl ester in case of the carboxylic acid) was removed. Aggregation of this polymer can be induced by addition of amines; if chiral amines are used, the polymer chains chirally stack. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 4817–4829, 2008     

Inherently chiral molecular clips: synthesis, chiroptical properties, and application to chiral discrimination

Inherently chiral molecular clips (MCs), pseudoenantiomeric anti-1 and anti-2, as well as mesoid syn-3, were synthesized by diastereodifferentiating repetitive Diels-Alder reactions of the achiral bisdienophile 6 with chiral diene 5 generated in situ from (-)-menthyl 3,4-bis(dibromomethyl)benzoate 4. These MCs were successfully separated by chiral HPLC to give optically active anti-1 and anti-2 and almost optically inactive syn-3. The structures of anti-1, anti-2, and syn-3 were assigned by high-resolution NMR and the absolute configurations of anti-1 and anti-2 were determined by the exciton-chirality method. Optically active anti-2 can serve as a chiral host. It binds the HCl adduct of D-tryptophan methyl ester (D-TrpOMeHCl) 3.5 times stronger than the L-enantiomer (KD/KL=3.5).     

Synthesis of organic–inorganic chiral block poly(methylphenylsilane) functional polymers,and study of their optical and chiroptical properties

Polysilanes upon UV irradiation give rise to silyl macroradicals which are capable to initiate radical polymerization. Hence, chiral block functional polysilanes were synthesized by UV irradiation of poly(methylphenylsilane) (PMPS) with a vinyl chiral monomer, (R)‐N‐(1‐phenylethyl)methacrylamide (R‐NPEMAM). The synthesized copolymer samples were characterized by FTIR, NMR, and UV–vis spectroscopy. The number and weight average molecular weights of PMPS and synthesized chiral‐block‐PMPS were measured by GPC analysis. Two glass transition temperatures (T_g) of the synthesized materials clearly indicate the formation of chiral‐block‐PMPS copolymers. SEM analysis also indicated the synthesized organic–inorganic block copolymers. The optical and chiroptical properties of the synthesized materials were studied. The cotton effect is observed not only at 276 nm due to aromatic ring of the chiral monomer units but also at 325 nm which is associated with the Si–Si conjugation of PMPS block of synthesized functional polysilanes. Such tunable chirality may find potential application in optoelectronics. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 3626–3634     

On the determination of the stereochemistry of semisynthetic natural product analogues using chiroptical spectroscopy: desulfurization of epidithiodioxopiperazine fungal metabolites

Isolation and semisynthetic modification of the fungal metabolite chaetocin gave access to a desulfurized analogue of this natural product. Detailed chiroptical studies, comparing experimentally obtained optical rotation values, electronic circular dichroism spectra, and vibrational circular dichroism spectra to computationally simulated ones, reveal the desulfurization of chaetocin to unambiguously proceed with retention of configuration. Consideration of the plausible mechanisms for this process highlighted inconsistencies in the stereochemical assignment of related molecules in the literature. This in turn allowed the stereochemical reassignment of the natural product analogue dethiodehydrogliotoxin.     

Cyclotetrabenzoin: Facile Synthesis of a Shape‐Persistent Molecular Square and Its Assembly into Hydrogen‐Bonded Nanotubes

Cyanide‐catalyzed benzoin condensation of terephthaldehyde produces a cyclic tetramer, which we propose to name cyclotetrabenzoin. Cyclotetrabenzoin is a square‐shaped macrocycle ornamented with four α‐hydroxyketone functionalities pointing away from the central cavity, the dimensions of which are 6.9×6.9 Å. In the solid state, these functional groups extensively hydrogen bond, resulting in a microporous three‐dimensional organic framework with one‐dimensional nanotube channels. This material exhibits permanent—albeit low‐porosity, with a Langmuir surface area of 52 m² g^?1. Cyclotetrabenzoin’s easy and inexpensive synthesis and purification may inspire the creation of other shape‐persistent macrocycles and porous molecular crystals by benzoin condensation.     

Novel synthetic approach for optical resolution of cryptophanol-A: a direct access to chiral cryptophanes and their chiroptical properties

The separation by crystallization of the pair of cryptophane diastereomers 1 a and 1 b, obtained in 1:1 ratio by treating racemic anti cryptophanol-A (2) with (-)-camphanic acid chloride, provided a substantial amount of optically pure material (diastereomeric excess>98 %). Subsequent hydrolysis afforded the optically pure cryptophanol-A enantiomers (+)-2 and (-)-2, which were submitted to nucleophilic substitution reactions to provide cryptophane-A (+)-3 and cryptophane monoester (-)-4 in optically pure form. The chiroptical properties of the new cryptophanes 1-4 were investigated by using circular dichroism spectroscopy, and the absolute configuration of the molecules was clearly established. These new cryptophanes represent additional interesting examples for studying the Cotton effect of interacting multichromophoric systems. Moreover, this novel approach presents numerous advantages over the other methods developed so far to obtain optically pure cryptophanes, and compounds (-)-2, (+)-2, and (-)-4 can give access to new enantiopure functionalized cryptophanes with host-guest properties similar to those of cryptophane-A.     

Total Synthesis,Characterization, and Conformational Analysis of the Naturally Occurring Hexadecapeptide Integramide A and a Diastereomer

Integramide A is a 16‐amino acid peptide inhibitor of the enzyme HIV‐1 integrase. We have recently reported that the absolute stereochemistries of the dipeptide sequence near the C terminus are L ‐Iva¹⁴‐D ‐Iva¹⁵. Herein, we describe the syntheses of the natural compound and its D ‐Iva¹⁴‐L ‐Iva¹⁵ diastereomer, and the results of their chromatographic/mass spectrometric analyses. We present the conformational analysis of the two compounds and some of their synthetic intermediates of different main‐chain length in the crystal state (by X‐ray diffraction) and in solvents of different polarities (using circular dichroism, FTIR absorption, and 2D NMR techniques). These data shed light on the mechanism of inhibition of HIV‐1 integrase, which is an important target for anti‐HIV therapy.     

Biomolecular hybrid of a conducting polymer with DNA: morphology, structure, and doping behavior

A poly(o-methoxyaniline) (POMA)/DNA [weight fraction of DNA (W(DNA)) = 0.45] hybrid was prepared by mixing their solutions in sterilized double distilled water. The solution turned green upon aging for a longer time, and the doping of POMA by DNA was complete after about 15 d of aging. The doping was confirmed from the UV-vis spectra where the 599 nm peak of POMA(EB) disappeared and a new peak for a pi to localized polaron band-transition appeared. With increasing aging time the new peak gradually shifted from 674 nm at 3 h to 820 nm at 15 d of mixing and thereafter it remained constant. The absence of a free carrier tail in the UV-vis spectra indicated a coiled structure of POMA in the complex. Circular dichroism spectra of the hybrid solution indicated that the DNA conformation (double helical structure) remained unchanged in the hybrid. The SEM micrograph of the freeze-dried hybrid showed a needle-like morphology of the DNA dispersed in a polymer matrix and it was completely different from the fibrillar network morphology of pure DNA in the solid state. The TEM micrograph indicated a homogeneous dispersion of DNA fibrils in the POMA matrix. The melting temperature of the POMA-DNA hybrid showed an increase compared to that of pure DNA by 5 degrees C, probably caused by an electrostatic interaction between the DNA anion and the POMA radical cation generated in the doping process. WAXS investigations revealed that the DNA crystal structure remained unchanged in the hybrid whereas the POMA crystal structure might be lost. An FT-IR study suggested that interaction occurred between the phosphoric acid group of DNA and a nitrogen atom of POMA through proton transfer from the OH group of the former. A schematic model of the POMA-DNA complex randomly anchoring POMA chains with the DNA molecule was proposed. The dc conductivity of the POMA-DNA complex was found to be ca. 10(-7) S . cm(-1). Hence, this work describes a procedure for making a DNA-conducting polymer hybrid without changing the conformation and structure of DNA. [Diagram: see text]     

Synthesis and chiroptical properties of optically active polymer liquid crystals containing azobenzene chromophores

A series of optically active methacrylic homopolymers, poly[(4‐{4′‐[(S)‐2‐methyl‐1‐butyloxycarbonyl]phenylazo}phenoxyl)x‐methylene methacrylate] (x = 0, 2, 6, or 11), were synthesized. The structures of the polymers were characterized by IR, ¹H NMR, UV, differential scanning calorimetry, and gel permeation chromatography. The chiroptical properties of the polymers in films were investigated with circular dichroism (CD) measurements. The CD and UV spectra of the films suggested that CD absorptions occurred in the films of the polymers with long spacers (x = 6 or 11) but not in the films of the polymers with short spacers (x = 0 or 2). After irradiation with linearly polarized light at 442 nm, the CD values were amplified in all the polymeric films. The amplificatory values of the CD bands in the absorption region (260–360 nm) of azobenzene chromophores suggested that the spacer length had an effect on both the transfer of chirality and photoinduced chirality in the polymeric films. The largest level of photoinduced chirality was induced in the polymer containing six methylene units. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 3210–3219, 2006     

Noncovalent Chirality Sensing Ensembles for the Detection and Reaction Monitoring of Amino Acids,Peptides, Proteins,and Aromatic Drugs

Ternary complexes between the macrocyclic host cucurbit[8]uril, dicationic dyes, and chiral aromatic analytes afford strong induced circular dichroism (ICD) signals in the near‐UV and visible regions. This allows for chirality sensing and peptide‐sequence recognition in water at low micromolar analyte concentrations. The reversible and noncovalent mode of binding ensures an immediate response to concentration changes, which allows the real‐time monitoring of chemical reactions. The introduced supramolecular method is likely to find applications in bioanalytical chemistry, especially enzyme assays, for drug‐related analytical applications, and for continuous monitoring of enantioselective reactions, particularly asymmetric catalysis.     

Application of MCD spectroscopy and TD-DFT to nonplanar core-modified tetrabenzoporphyrins: effect of reduced symmetry on nonplanar porphyrinoids

The optical spectra of a series of core-modified tetrabenzoporphyrins were analyzed to determine the effects of core modification, ligand folding, and partial benzo substitution at the ligand periphery on the electronic structure by using magnetic circular dichroism (MCD) and NMR spectroscopy, X-ray crystallography, cyclic and differential pulse voltammetry, and TD-DFT calculations. Planar 21-carba-, 21-thia-, 21,23-dithia-, and 21-oxa-23-thiatetrabenzo[b,g,l,q]porphyrins reported previously were studied together with the previously unreported 21-oxa- and 21-carba-23-thiatetrabenzo[b,g,l,q]porphyrins. The optical properties of these compounds are compared to those of tetrabenzo[b,g,l,q]-, 5,10,15,20-tetraphenyl-, 5,10,15,20-tetraphenyltetrabenzo[b,g,l,q]-21-thia-, 5,10,15,20-tetraphenyltetrabenzodithia-, 5,10,15,20-tetraphenyldibenzo[g,q]-21,23-dithia-, 5,10,15,20-tetraphenyldibenzo[b,l]-21,23-dithia-, 5,10,15,20-tetraphenyltribenzo[g,q,l]-21-thia-, and 5,10,15,20-tetraphenylbenzo[b]-21-thiaporphyrins. Michl's perimeter model and Gouterman's four-orbital model are used to conceptualize the results and to account for red shifts commonly observed in the spectral bands of nonplanar porphyrinoids.     

Three Types of Induced Tryptophan Optical Activity Compared in Model Dipeptides: Theory and Experiment

The tryptophan (Trp) aromatic residue in chiral matrices often exhibits a large optical activity and thus provides valuable structural information. However, it can also obscure spectral contributions from other peptide parts. To better understand the induced chirality, electronic circular dichroism (ECD), vibrational circular dichroism (VCD), and Raman optical activity (ROA) spectra of Trp‐containing cyclic dipeptides c‐(Trp‐X) (where X=Gly, Ala, Trp, Leu, nLeu, and Pro) are analyzed on the basis of experimental spectra and density functional theory (DFT) computations. The results provide valuable insight into the molecular conformational and spectroscopic behavior of Trp. Whereas the ECD is dominated by Trp π–π* transitions, VCD is dominated by the amide modes, well separated from minor Trp contributions. The ROA signal is the most complex. However, an ROA marker band at 1554 cm^?1 indicates the local χ₂ angle value in this residue, in accordance with previous theoretical predictions. The spectra and computations also indicate that the peptide ring is nonplanar, with a shallow potential so that the nonplanarity is primarily induced by the side chains. Dispersion‐corrected DFT calculations provide better results than plain DFT, but comparison with experiment suggests that they overestimate the stability of the folded conformers. Molecular dynamics simulations and NMR results also confirm a limited accuracy of the dispersion‐DFT model in nonaqueous solvents. Combination of chiral spectroscopies with theoretical analysis thus significantly enhances the information that can be obtained from the induced chirality of the Trp aromatic residue.     

Characterization of conformational changes and noncovalent complexes of myoglobin by electrospray ionization mass spectrometry,circular dichroism and fluorescence spectroscopy

Electrospray ionization mass spectrometry (ESI‐MS) was employed to monitor the heme release and the conformational changes of myoglobin (Mb) under different solvent conditions, and to observe ligand bindings of Mb. ESI‐MS, complemented by circular dichroism and fluorescence spectroscopy, was used to study the mechanism of acid‐ and organic solvent‐induced denaturation by probing the changes in the secondary and the tertiary structure of Mb. The results obtained show that complete disruption of the heme–protein interactions occurs when Mb is subjected to one of the following solution conditions: pH 3.2–3.6, or solution containing 20–30% acetonitrile or 40–50% methanol. Outside these ranges, Mb is present entirely in its native state (binding with a heme group) or as apomyoglobin (i.e. without the heme). Spectroscopic data demonstrate that the denaturation mechanism of Mb induced by acid may be significantly different from that by the organic solvent. Low pH reduces helices in Mb, whereas certain organic content level in solution results in the loss of the tertiary structure. ESI‐MS conditions were established to observe the H₂O‐ and CO‐bound Mb complexes, respectively. H₂O binding to metmyoglobin (17 585 Da), where the heme iron is in the ferric oxidation state, is observed in ESI‐MS. CO binding to Mb (17 595 Da), on the other hand, can be only observed after the heme iron is reduced to the ferrous form. Therefore, ESI‐MS combined with spectroscopic techniques provides a useful means for probing the formation of ligand‐binding complexes and characterizing protein conformational changes. Copyright © 2010 John Wiley & Sons, Ltd.