Si_2P_2分子结构和光谱的理论研究

用密度泛函方法 [B3LYP/6- 31 1G(d) ]研究了Si2 P2 分子的各种可能异构体的结构、能量和红外光谱 .结果表明 :Si2 P2 分子有 5个稳定的异构体 ,能量最低的异构体为具有P—P桥键的蝴蝶形结构 ,其次为具有Si—Si桥键的菱形结构 ,而具有Si—Si中心键的直线结构能量最高 .并进一步将Si2 P2 和C2 N2分子在结构和能量上的差异进行了比较和分析 .     

Si2CN分子结构的理论研究

在B3LYP／6－311G（d）水平上对Si2CN的各种可能异构体进行了研究，得到了其几何构型，结果表明：Si2CN有11个稳定的异构体，能量最低的是直线型异构体SiCNSi1,其次是四元环构型具有SiC桥键，电子态为^2A″的cSiSiCN6，第三稳定的是具有CSiSi三元环和环外NC键的N－cCSiSi10^2A1，第四稳定的是四元环具有SiN桥键^2A″电子态异构体cSiSiCN7。     

含杂原子富勒烯C_(58)X_2(X=B、N、P)电子结构的量子化学研究

用CNDO／2方法在586微机上计算了C60，C59X1和C58X2（X=B、N、P）的23种位置异构体共73个分子的电子结构。在C58X2的23种位置异构体中C58B2（1，9），C58N2（1，9）和C58P2（1，2）分别是最稳定的。C59X1和的稳定性都比C60差，氧化或还原都比C60容易。在C59X1和分子中与杂原子相距1个、2个或3个键的C原子的电荷密度比C60分子的增加或减少较多，其亲电或亲核反应能力增强；与杂原子直接相连的键或挪巨1个、2个、3个键的2个C原子间WibergOrder比C60分子增加或减少较多，其键的强度增强或减弱。     

铍硼四原子簇合物的量子化学从头算

铍和硼簇合物的实验和理论研究表明,它们有特殊的成键方式,BBe2,B2Be2,B6Be和B4Be等簇合物结构已由晶体粉末法测得^[1]。这类化合物可用于带电粒子的活化分析和低能电子的遏止实验,有一定应用前景^[2],对BnBem簇电子结构和成键性质进行研究,不仅对理解大簇和凝聚相的形成机制及微观结构等有重要意义,而且有一定的应用价值^[3-6],B2Be/B2Be^ 的结构^[7]已有论证。本文选用高精度大基组二次组态相互作用QCISD（T）／6－311G^**方法对BBe3,B2Be2和B3Be的电子结构进行了计算,并在HF／6－31G^*水平上作了频率计算。     

nido-C2B9H112-碳硼烷异构体结构和稳定性的密度泛函研究

采用密度泛函方法对11顶点巢式碳硼烷C2B9H112-异构体进行了几何结构优化,分析了稳定性、电荷分布及分子轨道.结果表明,9个异构体都有对应的稳定构型,保持了巢式骨架结构.C取代开口五元环上B的异构体更稳定,且随取代数目增加和C原子间距增加而增加,C—C键和C—B键作用增强.C取代内层B使异构体稳定性降低,C—C键和C—B键长随之增长.负电荷主要集中在C原子上,开口五元环上的C原子上负电荷要比内层C原子更多,成为亲核取代反应中心.异构体分子前线轨道具有和η5-C5H5-相似的π键性质,ΔELUMO-HOMO反映的化学稳定性与结构能量稳定性趋势一致.     

B24N24团簇的结构与稳定性

采用密度泛函理论,在B3LYP/6-31G^*水平下,对B₂₄N₂₄笼状团簇的12种异构体进行了优化,并对它们的几何构型、化学键性质、振动光谱和稳定性进行了探讨.研究表明:具有S₈对称的含有2个八元环、8个四元环和16个六元环的结构h是B₂₄N₂₄笼状团簇最稳定的异构体,只存在B-N键,而无N-N和B-B键.含有五元环结构的稳定性最低.B-B和N-N键对的数目越多,结构的稳定性越低.12种异构体的稳定性顺序为h＞a＞b＞I＞g＞l＞c＞k＞j＞d＞e＞f.     

杂富勒烯的电子结构与性质关系的研究──Ⅱ.C_(57)X_3,C_(56)X_4(X=B、N、P)的位置异构体

用 CNDO／2方法在 586微机上计算了 C57X3C56X4（X=B、N、P）的 234个位置异构体的电子结构。在C57X3（X=B、N、P）位置异构体中，C57X3（1，2，9）（X=B、N、P）分别是最稳定的。对于C56X4（X=B、N、P）位置异构体，C56B4（1，2，9，8），C56N4（1，2，9，12）和C56P4（1，2，9，12）分别是最稳定的，但稳定性都比C60差。其氧化或还原性都比 C60好，将它们和 C60比较，与 X相距一个或两个键的 C原子电荷密度增加或减少较多，其余电或亲核反应性增加；X与 X，X与 C原子之间 Wiberg Order都减少较多，其键的强度削弱；邻近杂原子的 C与 C原子之间 Wiberg Order减少或增加很少，其键的强度稍有削弱或增强。     

C70S可能异构体的结构与稳定性的理论研究

分别用半经验的AMl，PM3及MNDO方法研究了富勒烯衍生物C70S的12种可能异构体的结构和稳定性．计算结果表明：S原子加成在4种6-6键上的稳定构型中，非赤道带6-6键加成的三个异构体为闭环结构，赤道带6-6键加成的一个异构体为开环结构；S原子加成在4种6-5键上均可产生开环和闭环两种稳定构型．加成在6-5双键的异构体其闭环构型更稳定，加成在6-5单键的异构体其开环构型更稳定．闭环异构体中S原子加成在碳球极处6-6键上的构型1，2最稳定，开环异构体中S原子加成在赤道带6-6键上的构型8最稳定．     

SiC2S分子结构和光谱的理论研究

在CCSD（T）/6-311G（2df)//B3LYP/6-311G(d)水平上对SiC2S的各种可能异构体进行了研究。得到了其几何构型,精确能量和红外光谱。结果表明：SiC2S有8个稳定的异构体,能量最低的是直线型,电子态为^1∑的SiCCP1,其次是C2v对称性的S-cSiCC5,第三稳定的是直线型^1∑电子态异构体SSiCC2,第四稳定的是具有CC桥键C2v对称性的长菱形结构的.     

AMT异构体互变机理的理论研究

用密度泛函理论(DFT)的B3LYP/6-311G(d, p)和Müller-Plesset微扰理论的MP2/6-31G(d)方法，优化了AMT(2-氨基-5-巯基-1,3,4-噻二唑)各种异构体和过渡态结构的几何构型，并对它们的电子结构、振动光谱和化学键性质进行了研究.还研究了AMT异构体的互变机理，提出了AMT异构体abcda的循环式互变途径.进一步完成了对AMT异构体成键方式的自然键轨道(NBO)分析.     

Exploring the actinide-actinide bond: theoretical studies of the chemical bond in Ac2, Th2, Pa2, and U2

Multiconfigurational quantum chemical methods (CASSCF/CASPT2) have been used to study the chemical bond in the actinide diatoms Ac2, Th2, Pa2, and U2. Scalar relativistic effects and spin-orbit coupling have been included in the calculations. In the Ac2 and Th2 diatoms the atomic 6d, 7s, and 7p orbitals are the significant contributors to the bond, while for the two heavier diatoms, the 5f orbitals become increasingly important. Ac2 is characterized by a double bond with a 3Sigmag-(0g+) ground state, a bond distance of 3.64. A, and a bond energy of 1.19 eV. Th2 has quadruple bond character with a 3Dg(1g) ground state. The bond distance is 2.76 A and the bond energy (D0) 3.28 eV. Pa2 is characterized by a quintuple bond with a 3Sigmag-(0g+) ground state. The bond distance is 2.37 A and the bond energy 4.00 eV. The uranium diatom has also a quintuple bond with a 7Og (8g) ground state, a bond distance of 2.43 A, and a bond energy of 1.15 eV. It is concluded that the strongest bound actinide diatom is Pa2, characterized by a well-developed quintuple bond.     

(Cl_2AlNH_2)_n和(H_2AlNH_2)_n(n=1～ 5)簇结构及其热力学性质

用 HF自洽场理论和密度泛函理论 (DFT)的 B3LYP方法 ,在 6 31G水平上研究了低聚物 (Cl2AlNH2)n和 (H2AlNH2)n(n=1～ 5)簇的几何构型、电子结构和聚合反应热力学性质 ,比较了两个系列化合物中化学键的强度 .结果表明 ,Cl2AlNH2和 H2AlNH2分子为 C2υ (EC)平面型结构 ,其中 Al－ N为由一个σ键和一个π键组成的双键 .(Cl2AlNH2)n和 (H2AlNH2)n(n=1～ 5)分子为 Dnh对称 ,Al－ N是典型的σ单键 .低聚物 (Cl2AlNH2)n和 (H2AlNH2)n的稳定性顺序分别为 : 3 > 2 > 4> 5 > 1和 8 > 7 > 9 > 11 > 6.     

Ultrafast 2D IR anisotropy of water reveals reorientation during hydrogen-bond switching

Rearrangements of the hydrogen bond network of liquid water are believed to involve rapid and concerted hydrogen bond switching events, during which a hydrogen bond donor molecule undergoes large angle molecular reorientation as it exchanges hydrogen bonding partners. To test this picture of hydrogen bond dynamics, we have performed ultrafast 2D IR spectral anisotropy measurements on the OH stretching vibration of HOD in D(2)O to directly track the reorientation of water molecules as they change hydrogen bonding environments. Interpretation of the experimental data is assisted by modeling drawn from molecular dynamics simulations, and we quantify the degree of molecular rotation on changing local hydrogen bonding environment using restricted rotation models. From the inertial 2D anisotropy decay, we find that water molecules initiating from a strained configuration and relaxing to a stable configuration are characterized by a distribution of angles, with an average reorientation half-angle of 10°, implying an average reorientation for a full switch of ≥20°. These results provide evidence that water hydrogen bond network connectivity switches through concerted motions involving large angle molecular reorientation.     

2'-Fluoro substituents can mimic native 2'-hydroxyls within structured RNA

The ability of fluorine in a C-F bond to act as?a hydrogen bond acceptor is controversial. To test such ability in complex RNA macromolecules, we have replaced native 2'-OH groups with 2'-F and 2'-H groups in two related systems, the Tetrahymena group I ribozyme and the ΔC209 P4-P6 RNA domain. In three cases the introduced 2'-F mimics the native 2'-OH group, suggesting that the fluorine atom can accept a hydrogen bond. In each of these cases the native hydroxyl group interacts with a purine exocyclic amine. Our results give insight about the properties of organofluorine and suggest a possible general biochemical signature for tertiary interactions between 2'-hydroxyl groups and exocyclic amino groups within RNA.     

(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)簇结构及其热力学性质

用HF自洽场理论和密度泛函理论(DFT)的B3LYP方法,在6 31G水平上研究了低聚物(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)簇的几何构型、电子结构和聚合反应热力学性质,比较了两个系列化合物中化学键的强度.结果表明,Cl2AlNH2和H2AlNH2分子为C2 (EC)平面型结构,其中Al－N为由一个σ键和一个键组成的双键.(Cl2AlNH2)n和(H2AlNH2)n(n=1～5)分子为Dnh对称,Al－N是典型的σ单键 .低聚物(Cl2AlNH2)n和(H2AlNH2)n的稳定性顺序分别为: 3 > 2 > 4> 5 > 1和8 > 7 > 9 > 11 > 6.     

Single-Molecule Force Spectroscopy Reveals Stability of mitoNEET and its [2Fe2Se] Cluster in Weakly Acidic and Basic Solutions

The outer mitochondrial membrane protein mitoNEET (mNT) is a recently identified iron-sulfur protein containing a unique Fe₂S₂(His)₁(Cys)₃ metal cluster with a single Fe−N(His87) coordinating bond. This labile Fe−N bond led to multiple unfolding/rupture pathways of mNT and its cluster by atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS), one of most common tools for characterizing the molecular mechanics. Although previous ensemble studies showed that this labile Fe−N(His) bond is essential for protein function, they also indicated that the protein and its [2Fe2S] cluster are stable under acidic conditions. Thus, we applied AFM-SMFS to measure the stability of mNT and its cluster at pH values of 6, 7, and 8. Indeed, all previous multiple unfolding pathways of mNT were still observed. Moreover, single-molecule measurements revealed that the stabilities of the protein and the [2Fe2S] cluster are consistent at these pH values with only ≈20 pN force differences. Thus, we found that the behavior of the protein is consistent in both weakly acidic and basic solutions despite a labile Fe−N bond.     

The CeO(2)(+) Cation: Gas-Phase Reactivity and Electronic Structure

"Bare" CeO(2)(+) ions can be prepared in the gas phase by consecutive oxidation of Ce(+) with O(2) and NO(2). The ability to activate saturated and unsaturated hydrocarbons is investigated by use of Fourier-transform ion cyclotron resonance mass spectrometry. In the reactions of CeO(2)(+) with linear and branched alkanes C-H bond activation is observed almost exclusively. In contrast, both oxygen-atom transfer and C-H bond activation processes occur when thermalized CeO(2)(+) cations react with simple alkenes and aromatic compounds. C-C bond activation is not observed at all. Insight into the structural and electronic properties of neutral CeO(2) and cationic CeO(2)(+) is provided by means of quasirelativistic density-functional and ab initio pseudopotential calculations. They reveal a (2)Sigma(u)(+) ground state for CeO(2)(+) which is best described as a linear cerium dioxide with a resonating pi bond. Finally, we discuss the influence of oxo ligands on the chemistry of the cationic CeO(n)()(+) (n = 0-2) species toward hydrocarbons.     

ClClO2 is the most stable isomer of Cl2O2. Accurate coupled cluster energetics and electronic spectra of Cl2O2 isomers

High level ab initio electronic structure calculations at the coupled cluster level with a correction for triples (CCSD(T)) extrapolated to the complete basis set limit have been made for the thermodynamics of the Cl2O2 isomers: ClClO2, ClOOCl, and ClOClO. The ClClO2 isomer is predicted to be the most stable isomer and is more stable than ClOOCl by 3.1 kcal/mol at 298 K. The ClOClO isomer is less stable than ClOOCl by 8.3 kcal/mol at 298 K. The weakest bond in ClClO2 is the Cl-Cl bond with a bond dissociation energy (BDE) of 24.4 kcal/mol, and the smallest BDE in ClOOCl is the O-O bond with a value of 18.0 kcal/mol. The smallest BDE in ClOClO is for the central O-Cl bond with a BDE of 9.7 kcal/mol. Electronic transitions were calculated with the equations of motion EOM-CCSD method. The calculations clearly demonstrate that singlet states of ClClO2 absorb to longer wavelengths in the visible than do the singlet states of ClOOCl as does ClOClO.     

Structure and bonding of transition metal-boryl compounds. Theoretical study of [(PH3)2(CO)ClOs-BR2] and [(PH3)2(CO)2ClOs-BR2] (BR2 = BH2, BF2, B(OH)2, B(OCH=CHO), Bcat)

Quantum chemical DFT calculations using the B3LYP functionals have been carried out for the electronically unsaturated 16 VE five-coordinate osmium boryl-complexes [(PH3)2(CO)ClOs-BR2] and the 18 VE six-coordinate complexes [(PH3)2(CO)2ClOs-BR2] with BR2 = BH2, BF2, B(OH)2, B(OHC=CHO), and Bcat (cat = catecholate O2C6H4). The bonding situation of the Os-BR2 bond was analyzed with the help of the NBO partitioning scheme. The Os-B bond dissociation energies of the 16 VE complexes are very high, and they do not change very much for the different boryl ligands. The 18 VE complexes have only slightly lower bond energies than the 16 VE species. The Os-B bond in both classes of compounds is provided by a covalent sigma-bond which is polarized toward osmium and by strong charge attraction. Os-->B pi-donation is not important for the Os-B binding interactions, except for the Os-BH2 complexes. The stability of the boryl complexes [Os]-BR2 comes mainly from B<--R pi-donation, which is clearly higher than the Os-->B pi-donation. The intraligand charge distribution of the BR2 group changes little when the Os-B bond is formed, except for BH2. The CO ligand in [(PH3)2(CO)2ClOs-BR2] which is trans to BR2 has a relatively weak bond to the osmium atom.     

Cp2V] migration along an octatetrayne chain: from the monometallic complex (Cp2V(2-4eta-tBuC triple bond C2-C triple bond CC triple bond CtBu)] to the dimetallic complex

The oxidative addition of one equivalent of [Cp2V] (4) to the tetrayne ligand tBuC triple bond CC triple bond CC triple bond CC triple bond CtBu (5) gives the monometallic complex [Cp2V(3-4eta-tBuC triple bond C-C2-C triple bond CC triple bond CtBu)] (7). Compound 7 reacts further with a second equivalent of [Cp2V] to give the dimetallic complex [(Cp2V)2(1-2eta:7-8eta-tBuC2-C triple bond CC triple bond C-C2tBu)] (8), which involves a shift of the first coordinated [Cp2V] unit from the internal C3-C4 to the external C1-C2 positions on the alkynyl ligand. Compound 8 is also directly obtained by the addition of two equivalents of [Cp2V] to 5. Reversibly, reaction of 8 with 5 leads to 7. This exchange reaction between 7 and 8 by adding successively 5 and 4 has been monitored by EPR spectroscopy. By contrast, the oxidative addition of one or two equivalents of [Cp2V] to the tetrayne ligand PhC triple bond CC triple bond CC triple bond CC triple bond CPh (6) gives the homodimetallic complex [(Cp2V)2(1-2eta:7-8eta-PhC2-CC triple bond CC triple bond C-C2-Ph)] (9). Both monometallic and dimetallic complexes 7, 8, and 9 have been characterized by X-ray diffraction. Magnetic moment measurements for 8 and 9 from 300 to 4 K indicated a weak antiferromagnetic J exchange coupling of -12.5 and -4.1 cm(-1), respectively.