PHOTOPHYSICAL PROPERTIES OF PHYCOBILIPROTEINS FROM PHYCOBILISOMES: FLUORESCENCE LIFETIMES, QUANTUM YIELDS, AND POLARIZATION SPECTRA

Abstract— Absorption and fluorescence polarization spectra, as well as absolute fluorescence quantum yields, and lifetimes of phycobiliproteins separated from intact phycobilisomes of Porphyridium cruentum, Nostoc sp. and Fremyella diplosiphon were measured. Two different types of phycoerythrin, in addition to phycocyanin and allophycocyanin, were separated from both Porphyridium cruentum and Nostoc sp. phycobilisomes. They were distinguishable by the shape of their absorption spectra, values of fluorescence quantum yields and their limiting polarization. Phycobilisomes of Fremyella diplosiphon had a type of phycoerythrin that was different from the above kinds. By the use of fluorescence quantum yields and lifetime data, the values of natural lifetimes, the decadic molar extinction coefficients, as well as Förster's critical distances R ₀ for excitation energy transfer, between phycobiliproteins in phycobilisomes, were estimated. The values obtained of Förster's critical distances indicate that for most efficient energy transfer from phycoerythrin to allophycocyanin, the outer layers of Porphyridium cruentum and Nostoc sp. phycobilisomes should be composed of bangiophycean, phycoerythrin and cyanophytan phycoerythrin-II respectively.     

SPECTRAL PROPERTIES OF PHYCOBILISOMES AND PHYCOBILIPROTEINS FROM THE BLUE-GREEN ALGA-NOSTOC SP.*

Abstract— An improved method for phycobilisome isolation from a blue-green alga Nostoc sp. was developed using 1% Triton X-100. The phycobilisome preparations showed little fragmentation and had structures similar in size to those observed in thin sections of the organism. Phycobiliproteins isolated from phycobilisomes and examined by sodium dodecyl sulfate polyacrylamide gel electrophoresis, had subunits with the following molecular weights: phycoerythrin (PE), 20,000 and 16,900; phycocyanin (PC), 14,700 and 16,300; and allophycocyanin (APC), 14,000. Isoelectric focusing of each phycobiliprotein resulted in major bands isoelectric at the following pH values: PE, 4.43, 4.45; PC 4.32; APC, 4.38. Absorption spectra at -196°c showed maxima at 551 and 566 nm for PE; 598 and 631 nm for PC; and 590, 600, 629 and 650 nm for APC. Concentrated vs dilute difference spectra of phycobiliproteins showed increased absorption at 574 nm (PE), 630 nm (PC) and 651 nm (APC) suggesting that spectral changes resulted from aggregation. Fluorescence analysis of each phycobiliprotein and of intact phycobilisome preparations showed that energy absorbed by phycoerythrin is transferred to allophycocyanin, possibly by a resonance transfer mechanism. These observations support a model where allophycocyanin forms the base of the phycobilisome which is attached to the photosynthetic membrane. The next layer is assumed to be phycocyanin, which in turn is followed by a phycoerythrin layer that is the outermost layer (on the stroma side) of the phycobilisome.     

Phycobiliproteins encapsulated in sol-gel glass

Light transducing phycobiliproteins are encapsulated in optically transparent sol-gel matrices. Absorption and fluorescence spectroscopies are used to characterize the effect of the sol-gel encapsulation on the conformation and aggregation states of the three major phycobiliproteins present in phycobilisomes: phycoerythrin, phycocyanin, and allophycocyanin. It is found that the effects of sol-gel entrapment on the spectroscopic properties are significantly different for the three phycobiliproteins. The results indicate that phycoerythrin undergoes only minor change in its native structure when entrapped in sol-gel. However, significant changes in conformation and aggregation state occur when phycocyanin and allophycocyanin are entrapped in sol-gel matrices. A thin film of sol-gel encapsulated phycoerythrin is also coated on an optical fiber surface and strong fluorescence from the evanescent wave excitation is detected. The potential applications of sol-gel encapsulated phycobiliproteins in biosensors are discussed.     

EXCITATION ENERGY TRANSFER IN THE CHROMATICALLY ADAPTED PHYCOBILIN SYSTEMS OF BLUE-GREEN ALGAE: DIFFERENCE IN THE ENERGY TRANSFER KINETICS AT PHYCOCYANIN LEVEL

Abstract— Excitation energy transfer in chromatically adapted phycobilin system was investigated with the blue-green algae Tolypothrix tenuis and, supplementary, Fremyella diplosiphon with use of time-resolved fluorescence spectrum (Yamazaki et al , 1984). Special attention was paid to the energy migration at the phycocyanin (PC) level in the phycoerythrin (PE)-rich and PE excited system and in the PE-less and PC excited system. The energy transfer from PC to allophycocyanin was far faster in the former than in the latter in both organisms. Such feature was the same as our previous observation for PE-rich system of Porphyridium cruentum and PE-less system of Anacystis nidulans (Yamazaki et al , 1984). Thus, the difference in phycobilisome structure is not a cause for such difference. Based on simulation analysis, we interpreted our observation as that (1) all PC chtomophores do not equally participate to the energy migration within PC compartment but (2) a short transfer path through PC compartment is formed probably by f-type chromophores and (3) the difference in the "length" of this path is a main determinant for kinetic difference between PE-rich and PE-less systems.     

The Use of Carrier Ampholyte-Free Isoelectric Focusing for Proteomic Analysis

Carrier ampholyte-free isoelectric focusing was applied for pre-concentration, purification and micropreparation of phycobiliproteins (C-phycocyanin, allophycocyanin, B-phycoerythrin) extracted from cyanobacteria Anabeana doliolum and from red microalga Porphyridium cruentum. The extraction of phycobiliproteins was carried out in deionized water. The sonication in the ultrasonic bath and liquid nitrogen freeze grind was used for extraction of proteins of interest. Pre-concentrated and pre-separated proteins were collected and analyzed via MALDI-TOF-TOF mass spectrometer after their proteolytic digestion via trypsin. Based on tandem mass spectrometric analysis, the C-phycocyanin, allophycocyanin and B-phycoerythrin were identified unambiguously.

     

POLARIZED PHOTO ACOUSTIC SPECTRA OF PHYCOBILISOMES IN POLYVINYL ALCOHOL FILMS

Abstract— Phycobilisomes from Porphyridium cruentum , suspended in polyvinyl alcohol were found to be highly stable, and had normal absorption and fluorescence spectra. Intact phycobilisomes had a major emission peak at 680 nm, whereas upon partial dissociating the major emission was at 580 nm. Incorporation of phycobilisomes in thin polyvinyl alcohol films facilitated examination by photoacoustic spectroscopy. The photoacoustic spectra had a broad absorption maximum at 545–565 nm (phycoerythrin), which resolved as two peaks (545 and 563 nm) in absorption spectra. Stretching of films resulted in apparent chromophore reorientation in partially dissociated, but not in intact phycobilisomes. Only in dissociated phycobilisomes was observed a differential chromophore orientation at 685 nm by polarized fluorescence, which is attributed to a change in orientation of the terminal phycobilisome pigment relative to phycoerythrin.     

The Use of Carrier Ampholyte-Free Isoelectric Focusing for Proteomic Analysis

Carrier ampholyte-free isoelectric focusing was applied for pre-concentration, purification and micropreparation of phycobiliproteins (C-phycocyanin, allophycocyanin, B-phycoerythrin) extracted from cyanobacteria Anabeana doliolum and from red microalga Porphyridium cruentum. The extraction of phycobiliproteins was carried out in deionized water. The sonication in the ultrasonic bath and liquid nitrogen freeze grind was used for extraction of proteins of interest. Pre-concentrated and pre-separated proteins were collected and analyzed via MALDI-TOF-TOF mass spectrometer after their proteolytic digestion via trypsin. Based on tandem mass spectrometric analysis, the C-phycocyanin, allophycocyanin and B-phycoerythrin were identified unambiguously.     

FLUORESCENCE RELAXATION KINETICS AND QUANTUM YIELD FROM THE PHYCOBILISOMES OF THE BLUE-GREEN ALGA NOSTOC SP. MEASURED AS A FUNCTION OF SINGLE PICOSECOND PULSE INTENSITY*

Abstract— A detailed experimental study of the effect of intensity of a 6 ps excitation pulse on the decay kinetics and yield from phycobilisomes (PBsomes) is presented. The fluorescence from the c-phycoerythrin (PE) emission from PBsomes was found to decay as a single exponential with a time of 31 ± 4ps for an excitation intensity <10¹⁴ photons/cm² per pulse. The risetime of the c-phycocyanin (PC) and allophycocyanin (APC) emission from PBsomes was found to be 34 ± 13 ps. Therefore, at low excitation intensities, the energy transfer time between the constituent phycobiliproteins, PE and PC, is measured to be 34 ± 13ps from the fluorescence decay time of PE and the fluorescence risetime of the PC and APC emission. The fluorescence yield from the PE emission component in PBsomes was found to be intensity dependent for excitation intensities >10¹⁴ photons/cm². The decrease in yield with increased intensity in this case occurred at a higher intensity than in the isolated phycobiliprotein PE. The fluorescence yield of the PC and APC emission component was also found to decrease markedly with increasing excitation intensity. This is in contrast to the case of the isolated phycobiliprotein APC which showed only a slight quenching of the fluorescence. The higher quenching observed for the APC emission in the PBsome evidences the higher effective absorption of APC via energy transfer from PE to PC and APC.     

EXCITATION ENERGY TRANSFER IN THE LIGHT HARVESTING ANTENNA SYSTEM OF THE RED ALGA Porphyridium cruentum AND THE BLUE-GREEN ALGA Anacystis nidulans: ANALYSIS OF TIME-RESOLVED FLUORESCENCE SPECTRA

Abstract— Time-resolved fluorescence spectra of intact cells of red and blue-green algae Porphyridium cruentum and Anacystis nidulans were measured by means of a ps laser and a time-correlated photon counting system. Fluorescence spectra were observed successively from various pigments in the light harvesting system in the order of phycoerythrin (PE), phycocyanin (PC), allophycocyanin (APC) and chlorophyll a (Chl a ). The spectrum changes with time in the range of0–400 ps in P. cruentum and of0–1000 ps in A. nidulans . The time-resolved spectra were analyzed into components to obtain the rise and decay curve of each fluorescence component. Overall time behaviors of the sequential fluorescence emissions from various pigments can be interpreted with a decay kinetics ofexp(–2 kt ^½). The rate constants of the energy transfer show that the energy transfer takes place much faster in the red alga P. cruentum than in the blue-green alga A. nidulans , particularly in the step PCAPC. Results also indicated that a special form of APC, far-emitting APC, exists in the pigment system of A. nidulans , but it does not mediate a main energy transfer from phycobilisome to Chl a.     

EXCITATION ENERGY TRANSFER IN THE CRYPTOPHYTES. FLUORESCENCE EXCITATION SPECTRA AND PICOSECOND TIME-RESOLVED EMISSION SPECTRA OF INTACT ALGAE AT 77 K

Excitation spectra of chlorophyll- a (Chl- a ) fluorescence in intact cells of Cryptomonas ovata, Chroomonas pauciplastida and Chroomonas salina were determined at 77 K. For all species the excitation spectra for emission from Chl- a associated with photosystem II (PSII) showed increased contributions by a carotenoid (493 nm) and phycobiliproteins, and decreased contributions by carotenoid (417 nm, 505 nm) and Chl- a (445 nm) as compared to excitation spectra for emission from Chl- a associated with photosystem I (PSI). Excitation spectra of C. salina and C. ovata showed an increased contribution by Chl- c ² to PSII Chl- a fluorescence emission. In all three species the absorbance band positions of Chl- a , as determined from the excitation spectra, were similar to those previously described in green plants. green algae and phycobilisome-containing organisms. Time-resolved 77 K fluorescence emission spectra of C. ovata and C. salina showed successive emission from both phycoerythrin and Chl- c ², PSII Chl- a , and PSI Chl- a. C. pauciplastida showed successive emission from phycocyanin, PSII Chl- a , and PSI Chl- a. Spectral red-shifts with time were observed for the phycobiliprotein peaks in all three species. The fluorescence decay of phycoerythrin in C. ovata and C. salina was faster than that of phycocyanin in C. pauciplastida. The results are discussed in relation to the organization of the antenna pigments of PSII and PSI in the cryptophyte algae.     

FLUORESCENCE RELAXATION KINETICS AND QUANTUM YIELD FROM THE ISOLATED PHYCOBILIPROTEINS OF THE BLUE-GREEN ALGA NOSTOC SP. MEASURED AS A FUNCTION OF SINGLE PICOSECOND PULSE INTENSITY, I

Abstract— Phycobilisomes from the blue-green alga Nostoc sp. are known to contain the phycobiliproteins: c-phycoerythrin (c-PE), c-phycocyanin (c-PC) and four forms of allophycocyanin (APC I, II, III, and B). We have made a detailed study of the effects of the intensity of a single 6 ps excitation pulse on the decay kinetics and the yield of fluorescence in the individual isolated phycobiliproteins at pH 7 and 23°C. The risetime of the fluorescence of c-PE, c-PC and APC was > 12 ps. We found that the decay of the fluorescence was exponential at intensities of 10¹⁴ photons/cm² in all the phycobiliproteins; the lifetimes being 1552 ± 31ps for c-PE, 2111 ± 83ps for c-PC, 1932 ± 165ps for APC I, 1870 ± 90ps for APC II, 1816 ± 88ps for APC III, (1869 ± 62ps for the averaged APC's I, II, and III), and 2667 ± 233 ps for APC B. We also found that the fluorescence decay became non-exponential in c-PE at excitation intensities < 10¹⁴ photons/cm², but was exponential for all the other phycobiliproteins even at a pulse intensity of 10¹⁵ photons/cm². The relaxation times of c-PE and c-PC decreased with excitation intensity above 10¹⁴ photons/cm². For c-PE and c-PC the relative fluorescence vs excitation intensity was readily described by a relationship derived for a model in which exciton–exciton annihilation occurs. In APC the fluorescence yield and relaxation time were only slightly dependent on the excitation intensity. The results are interpreted to indicate the occurrence of singlet–singlet annihilation intramolecularly among the several phycobilin chromophores within the individual phycobiliprotein molecules in solution. The s to f transfer time is less than 12ps in c-PC.     

Effects of PAR and UV Radiation on the Structural and Functional Integrity of Phycocyanin,Phycoerythrin and Allophycocyanin Isolated from the Marine Cyanobacterium Lyngbya sp. A09DM

An in vitro analysis of the effects of photosynthetically active and ultraviolet radiations was executed to assess the photostability of biologically relevant pigments phycocyanin (PC), phycoerythrin (PE) and allophycocyanin (APC) isolated from Lyngbya sp. A09DM. Ultraviolet (UV) irradiances significantly affected the integrity of PC, PE and APC; however, PAR showed least effect. UV radiation affected the bilin chromophores covalently attached to phycobiliproteins (PBPs). Almost complete elimination of the chromophore bands associated with α‐ and β‐subunit of PE and APC occurred after 4 h of UV‐B exposure. After 5 h of UV‐B exposure, the content of PC, PE and APC decreased by 51.65%, 96.8% and 96.53%, respectively. Contrary to PAR and UV‐A radiation, a severe decrease in fluorescence of all PBPs was observed under UV‐B irradiation. The fluorescence activity of extracted PBP was gradually inhibited immediately after 15–30 min of UV‐B exposure. In comparison to the PC, the fluorescence properties of PE and APC were severely lost under UV‐B radiation. Moreover, the present study indicates that UV‐B radiation can damage the structural and functional integrity of phycobiliproteins leading to the loss of their ecological and biological functions.     

Determination of phycobiliproteins by capillary electrophoresis with laser-induced fluorescence detection

Phycobiliproteins are derived from the photosynthetic apparatus of cyanobacteria and eukaryotic algae. They are composed of a protein backbone to which linear tetrapyrrole chromophores are covalently bound. Furthermore, they are water-soluble highly fluorescent, and relatively stable at room temperature and neutral pH. For this reason, capillary electrophoresis-laser induced fluorescence (CE-LIF) seems the idea method for determination of these important proteins. The effects of buffer additives such as sodium dodecyl sulfate (SDS)and putrescine on the separation of the three major phycobiliprotein types, namely allophycocyanin, phycocyanin, and phycoerythrin, with excitation and emission maxima at 652/660, 615/647, and 565(494)/575 nm, respectively, are considered. Detection limits for these proteins by CE-LIF are some 60-500 times better than by absorbance detection. The development of a fast and sensitive CE-LIF assay such as this is of potential significance to our understand ing of chemical and biological oceanographic processes.     

PHYCOBILIPROTEINS: COMPARISON OF SOLUTION AND SINGLE CRYSTAL FLUORESCENCE FOR C-PHYCOCYANIN AND B-PHYCOERYTHRIN*

Abstract— Trimeric and hexameric solution forms of C-phycocyanin (CPC) from the cyanophyte Agme-nellum quadruplicatum have been isolated and their spectral properties compared to those obtained from single crystals. Although the absorbance peak of a suspension of small C-phycocyanin crystals is red-shifted only 7 nm relative to the solution forms, the single crystal fluorescence is red-shifted 60 nm relative to the solution forms. The crystal fluorescence spectrum exhibits a single peak at LD_max= 708 nm when excited at 514.5 or 530.9 nm and two peaks (LD_max= 661 and 708 nm) when excitation occurs at 568.2 nm. Fluorescence depolarization measurements indicate that extensive energy transfer could occur for both solution and crystal forms with the latter being dependent upon the relative orientation of the crystal with respect to the excitation dipole. Similar results were obtained with B-phycoerythrin (BPE) from the red alga Porphyridium cruentum where the single crystal fluorescence is red-shifted =50nm relative to the solution spectra with two peaks (LD_max= 583 and 617 nm) observed whose relative intensities are dependent on the excitation wavelength (LD_max– 514.5 and 530.9 nm). Single crystal fluorescent lifetimes exhibited considerable shortening relative to that observed for the solution forms. The implications of these results are discussed with respect to the possible relationships of the crystalline structures to the assembly forms present within phycobilisomes.     

PHOTOSYNTHETIC ENERGY TRANSFER REVERSIBLY INHIBITED BY HYDROSTATIC PRESSURE*

Abstract— Hydrostatic pressure is found to affect reversibly the emission spectra of Porphyra perforata. At 1200atm phycoerythrin and phycocyanin fluorescence show a remarkable increase, whereas at the same time chlorophyll a (Chl a ) fluorescence decreases. Upon release of pressure the fluorescence intensities of the individual pigments return to their original levels. This effect indicates that hydrostatic pressure acts as a unique reversible inhibitor of energy transfer between phycobilins and Chi a in the chloroplast.
The effects of pressure and its release are relatively slow (minutes). It is suggested that pressure changes thylakoid membrane structure sufficiently to alter the critical distance between the phycobilisomes and Chl a , thus blocking the inductive resonance transfer of excitation energy.     

ALLOPHYCOCYANIN FORMS ISOLATED FROM NOSTOC SP. PHYCOBILISOMES*

Abstract— Allophycocyanin from dissociated phycobilisomes of Nostoc sp. occurs in three spectrally identifiable forms that fractionate on calcium phosphate adsorption chromatography as: allophycocyanin (APC) I (15–20%), APC II (4&50%), and APC III (30–40%). APC I has a single absorption maximum at 654 nm, and a fluorescence emission peak at 678 nm. The absorption peaks of APC II and III are both at 650 nm, but the relative absorbance at 620/650 nm of APC III is less than that of APC II. The emission of both is maximum at 660 nm. On zone sedimentation in sucrose, their S_20,w values of 6.0 ± 0.1 (APC I), 5.0 ± 0.1 (APC II), and 5.3 ± 0.2 (APC III) were comparable to the order of their elution from Sephadex G-200. On SDS acrylamide gel electrophoresis two subunits were resolved with apparent molecular weights of 16,900 and 18,400 daltons. When stained by Coomassie blue, they were present in a ratio of 1α:1β in APC II and III, and a probable ratio of 2a:3β in APC I. The larger size of APC I may be accounted for by additional β subunits, by the presence of an additional polypeptide of 35,000 daltons, or both. Over several days, bleaching as noted by a decrease in absorbance at 650 nm, occurred in all three forms; in addition, the more pronounced bleaching at 650 nm, relative to 620 nm, results in APC III becoming spectrally identical to APC II. A trace of a fourth pigment, probably comparable to allophycocyanin-B, was occasionally detected. The results suggest that several in vitro APC forms (sharing similar subunits) arise upon phycobilisome dissociation, and that APC I is the form most closely related to the final fluorescence emitter of intact phycobilisomes. In this form it probably serves as the bridging pigment in energy transfer from the phycobilisomes to chlorophyll.     

STUDIES ON ENERGY DISSIPATION IN PHYCOBILISOMES USING THE KENNARD-STEPANOV RELATION BETWEEN ABSORPTION AND FLUORESCENCE EMISSION SPECTRA

Absorption and fluorescence emission spectra were measured at room temperature ( ca. 22°C) for solutions of phycocyanin-1, phycocyanin-2 and allophycocyanin from Phormidium luridum , and also for phycobilisome preparations from various blue-green algae ( Anabaena variabilis, Nostoc muscorum strain A, Nostoc sp. strain Mac, Phormidium luridum ). Kennard-Stepanov (KS) temperatures ( T ) were computed using the Kennard-Stepanov relationship F () = b A () ^-5 exp(-h/ kT ), where F () stands for fluorescence (energy per wavelength interval) as a function of wavelength (), A () is absorbance as a function of wavelength, b a proportionality factor, and h, c and k are Planck's constant, the velocity of light and Boltzmann's constant, respectively.
In most cases experimenta/ data followed the expected relationship, but at low ionic strength allophycocyanin gave a clearly biphasic KS plot, i.e. In ⁵ F ()/ A () vs 1/. This could be due to the presence of both monomers and trimers in the sample at low ionic strength.
For purified allophycocyanin and phycocyanins (PC-1 and PC-2) as well as phycobilisomes from Phormidium luridum , the KS temperatures were only slightly (insignificantly) elevated above the sample temperature. Thus, after absorption of a photon, vibrational and configurational equilibration is essentially completed before emission of the fluorescence photon takes place.
For phycobilisomes from Anabaena variabilis and the two Nostoc species the KS temperatures were moderately elevated. Since there was no correlation between radiation temperature and excitation wavelength, the elevation is not due to excess (undissipated) vibrational energy, but rather to incomplete configurational equilibration.     

NUMBER AND DISTRIBUTION OF CHROMOPHORE TYPES IN NATIVE PHYCOBILIPROTEINS

Abstract— Fluorescence lifetimes and absolute quantum yields of a number of chromatographically pure phycobiliproteins have been determined. In conjunction with absorption, fluorescence emission and polarization spectra, these data were used to calculate the number of different types of chromophore, sensitizing and fluorescing, per chromoprotein.
To characterize the spatial distributions of the chromophores, the observed emission anisotropies were compared with those calculated from models, using the Förster transfer mechanism and the Jablonski 'active sphere' approximation. The experimental values are more consistent with surface locations for the fluorescing chromophores rather than with their distribution throughout the volume.
Theoretical efficiencies of transfer between sensitizing and fluorescing chromophores on the same macromolecule are consistent with those observed. The transfer efficiency from phycoerythrin prosthetic groups to chlorophyll a compared with that for transfer via phycocyanin indicates that the latter process is probably the favoured migration route.     

Computer simulation on the energy transfer processes in allophycocyanins

Ｐｈｙｃｏｂｉｌｉｐｒｏｔｅｉｎｓａｒｅｔｈｅｌｉｇｈｔｈａｒｖｅｓｔｉｎｇｐｉｇｍｅｎｔｓｆｏｒｐｈｏｔｏｓｙｎｔｈｅｓｉｓｉｎａｌｇａｅａｎｄｉｎｃｌｕｄｅｐｈｙｃｏｅｒｙｔｈｒｉｎ,ｐｈｙｃｏｃｙａｎｉｎａｎｄａｌｌｏｐｈｙｃｏｃｙａｎｉｎ.Ｉｎｒｅｄａｎｄｂｌｕｅａｌｇａｅ,ｄｉｆｆｅｒｅｎｔｋｉｎｄｓｏｆｐｈｙｃｏｂｉｌｉｐｒｏｔｅｉｎｓａｓｗｅｌｌａｓｌｉｎｋｅｒｐｏｌｙｐｅｐｔｉｄｅｓｆｏｒｍａｗｅｌｌｏｒｇｎｉｚｅｄｓｙｓｔｅｍｗｉｔｈｅｆｆｉｃｉｅｎｔｆｕｎｃｔｉｏｎｓｏｆｌｉｇ…     

POLARIZED TIME-RESOLVED FLUORESCENCE SPECTRA OF PHYCOBILISOMES ISOLATED FROM Tolypothrix tenuis EMBEDDED IN POLY(VINYL ALCOHOL) FILM

–Time-resolved fluorescence spectra in the ps time range were measured on phycobilisome (PBS) embedded in poly(vinyl alcohol) films. The cyanobacterium Tolypothrix tenuis was used as a source of PBS because the pigment composition and the structure of the PBS are well defined. Isotropic PBS in the unstretched film and PBS uniaxially oriented in the stretched film were investigated. Diameters of PBS hemidiscs were oriented parallel to the film-stretching direction. The time-resolved fluorescence spectra of the unstretched sample and of the two polarized components in the stretched samples showed several differences in the rise and decay. The delay time, estimated from the time span between the maximum laser pulse and maximal intensity of the phycocyanin and allophycocyanin fluorescence, was much longer than that reported in the aqueous media. This suggests occurrence of a higher thermal deactivation of PBS in polymer film than in aqueous media. The excitation energy transfer from excited phycocrythrin to allophycocyanin was more efficient in the unstretched than in the stretched samples, and it was greater in the parallel polarized component of the stretched sample than in the perpendicular component. The present results are in agreement with a previous suggestion which states that there are two independent pathways of excitation energy transfer in PBS and that there is more than one final emitter of fluorescence. The molecules taking part in various pathways of energy transfer differ in their orientation within PBS.