The deoxyxylulose phosphate pathway of terpenoid biosynthesis in plants and microorganisms

Recent studies have uncovered the existence of an alternative, non-mevalonate pathway for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate, the two building blocks of terpene biosynthesis.     

Photoregulated supramolecular hydrogels driven by polyradical interactions

Organic radical as a powerful tool has been extensively applied in synthetic chemistry. However, harnessing radical-mediated noncovalent interactions to fabricate soft materials remains elusive. Here we report a new category of supramolecular hydrogel system held by multiple radical-radical (polyradical) interactions, and its photosensitive cross-linking structure. A simple polyacrylamide with triarylamine (TAA) pendants is designed as the precursor. The TAA units in polymer can be converted into active TAA^•⁺ radical cations with light and further associate each other via TAA^•⁺‒TAA^•⁺ stacking interactions to form stable supramolecular network. Temporal control of the light irradiation dictates the degree of radical stacks, thus regulating the mechanical performance of the resulting hydrogel materials on-demand. Moreover, the reversible collapse of this hydrogels can be promoted by adding radical scavenger or exerting reduction voltage.     

Effect of carotenoid biosynthesis inhibition on the chlorosome organization in Chlorobium phaeobacteroides strain CL1401

We have studied the effect of the absence of carotenoids on the organization of bacteriochlorophylls (BChls) in chlorosomes of Chlorobium (Chl.) phaeobacteroides strain CL1401. Carotenoid-depleted chlorosomes were obtained by means of 2-hydroxybiphenyl-supplemented cultures. In the presence of the inhibitor, isorenieratene (Isr) and beta-Isr biosynthesis were inhibited to more than 95%, leading to an accumulation of the colorless precursor phytoene inside the chlorosomes. In addition, there was a 30-40% decrease in the baseplate BChl a content. The absorption spectrum of the carotenoid-depleted chlorosomes showed a 10 nm blue shift in the BChl e Qy absorption peak. Under reducing conditions, a decrease in the BChl a/BChl e fluorescence emission ratio was observed in carotenoid-depleted chlorosomes relative to that in control chlorosomes, caused mainly by the decrease in the BChl a content. The steady-state fluorescence emission anisotropy in the BChl e region dropped from approximately 0.24 for native chlorosomes to approximately 0.14 for carotenoid-depleted ones, indicating reorganization of BChl e. The circular dichroism (CD) signal of the carotenoid-depleted chlorosomes was increased two times in the BChl e Qy region. A simple model based on the structure proposed was used to explain the observed effects. Carotenoids might affect the angle between the direction of the BChl e Qy transition and the axis of the rod. The orientation of BChl a in the baseplate remains unchanged in carotenoid-depleted chlorosomes, although there is a partial loss of BChl a as a consequence of a decrease in the baseplate size. The carotenoids are most likely rather close to the BChls and appear to be important for the aggregate structure in Chl. phaeobacteroides.     

DNA-Targeted NO Release Photoregulated by Green Light

A novel molecular hybrid has been designed and synthesized in which acridine orange (AO) is covalently linked to an N-nitrosoaniline derivative through an alkyl spacer. Photoexcitation of the AO antenna with the highly biocompatible green light results in intense fluorescence emission and triggers NO detachment from the N-nitroso appendage via an intramolecular electron transfer. The presence of the AO moiety encourages the binding with DNA through both external and partially intercalative fashions, depending on the DNA:molecular hybrid molar ratio. Importantly, this dual-mode binding interaction with the biopolymer does not preclude the NO photoreleasing performances of the molecular hybrid, permitting NO to be photogenerated nearby DNA with an efficiency similar to that of the free molecule. These properties make the presented compound an intriguing candidate for fundamental and potential applicative research studies where NO delivery in the DNA proximity precisely regulated by harmless green light is required.     

Identification of a carotenoid oxygenase synthesizing acyclic xanthophylls: combinatorial biosynthesis and directed evolution

A carotenoid desaturase homolog from Staphylococcus aureus (CrtOx) was identified. When expressed in engineered E. coli cells synthesizing linear C(30) carotenoids, polar carotenoid products were generated, identified as aldehyde and carboxylic acid C(30) carotenoid derivatives. The major product in this engineered pathway is the fully desaturated C(30) dialdehyde carotenoid 4,4'-diapolycopen-4,4'-dial. Very low carotenoid yields were observed when CrtOx was complemented with the C(40) carotenoid lycopene pathway. But extension of an in vitro evolved pathway of the fully desaturated 2,4,2',4'-tetradehydrolycopene produced the structurally novel fully desaturated C(40) dialdehyde carotenoid 2,4,2',4'-tetradehydrolycopendial. Directed evolution of CrtOx by error-prone PCR resulted in a number of variants with higher activity on C(40) carotenoid substrates and improved product profiles. These findings may provide new biosynthetic routes to highly polar carotenoids with unique spectral properties desirable for a number of industrial and pharmaceutical applications.     

Photoregulated transmembrane charge separation by linked spiropyran-anthraquinone molecules

Amide-linked spiropyran-anthraquinone (SP-AQ) conjugates were shown to mediate ZnTPPS(4-)-photosensitized transmembrane reduction of occluded Co(bpy)3(3+) within unilamellar phosphatidylcholine vesicles by external EDTA. Overall quantum yields for these reactions were dependent upon the isomeric state of the dye; specifically, 30-35% photoconversion of the closed-ring spiropyran (SP) moiety to the open-ring merocyanine (MC) form caused the quantum yield to decrease by 6-fold in the simple conjugate and 3-fold for an analogue containing a lipophilic 4-dodecylphenoxy substituent on the anthraquinone moiety. Transient spectroscopic and fluorescence quenching measurements revealed that two factors contributed to these photoisomerization-induced changes in quantum yields: increased efficiencies of fluorescence quenching of 1ZnTPPS4- by the merocyanine group and lowered transmembrane diffusion rates of the merocyanine-containing redox carriers. Transient spectrophotometry also revealed the sequential formation and decay of two reaction intermediates, identified as 3ZnTPPS4- and a species with the optical properties of a semiquinone radical. Kinetic profiles for Co(bpy)3(3+) reduction under continuous photolysis in the presence and absence of added ionophores indicated that transmembrane redox mediated by SP-AQ was electroneutral, but reaction by the other quinone-containing mediators was electrogenic. The minimal reaction mechanism suggested from the combined studies is oxidative quenching of vesicle-bound 3ZnTPPS4- by the anthraquinone unit, followed by either H+/e- cotransport by transmembrane diffusion of SP-AQH* or, for the other redox mediators, semiquinone anion-quinone electron exchange leading to net transmembrane electron transfer, with subsequent one-electron reduction of the internal Co(bpy)3(3+). Thermal one-electron reduction of Co(bpy)3(3+) by EDTA is energetically unfavorable; the photosensitized reaction therefore occurs with partial conversion of photonic energy to chemical and transmembrane electrochemical potentials.     

Photoregulated binding ability of azoaromatic polymer for surfactant

Water-soluble polymeric azodyes containing an azobenzene moiety in their side chain, p-phenylazoacrylanilide (PAAn)–acrylamide (AAm) copolymers, were synthesized and the adsorption-desorption behavior of sodium dodecyl sulfate (SDS) onto these copolymers in water was investigated by means of conductivity measurements, with attention to the hydrophobicity of the copolymer. The conductivity of the PAAn-AAm copolymer/SDS complex aqueous solution decreased with increasing PAAn composition in the copolymer. This result indicates that the SDS molecules adsorbed onto the copolymer. The adsorption state of SDS molecules on the copolymer was considered to take a micellelike form. When the hydrophobicity of the PAAn-AAm copolymer was decreased by means of the photoisomerization of an azodye moiety, the conductivity of the PAAn-AAm copolymer/SDS aqueous solution increased. This phenomenon can be explained as a result of desorption of SDS molecules from the copolymer. When the light source was cut off, the conductivity took on its original value. This indicated that SDS was desorbed by the photochemical trans to cis and adsorbed by cis to trans isomerization of the PAAn moiety.     

Disordered Low Molecular Weight Spiropyran Exhibiting Photoregulated Adhesion Ability

The functions of the materials composed of small molecules are highly dependent on their ordered molecular arrangements in both natural and artificial systems. Without ordered structure, small molecules hardly gain complicated functions, due to the absence of intermolecular covalent bond connection or strong network. Here, a low molecular weight spiropyran that could exhibit attractive photochromism and powerful adhesion property in disordered solid state is demonstrated. With maximum up to ∼8 MPa, the adhesion strength could be photoregulated in multiple levels, which also shows one-to-one correspondence to the specific color state. The working mechanism analysis on the photoregulated adhesion reveals that the isomer ratio of merocyanine form and the molecular packing density of spiropyran are the determining factors for the adhesion ability. The discovery of photoregulated adhesion from pure spiropyran provides a new strategy for developing functional materials by employing low molecular weight compounds.     

Photoregulated fluorescence switching in axially coordinated tin(IV) porphyrinic dithienylethene

Photochromic fluorophore Sn(TTP)(DTE)2 , in which two phenolic derivatives of 1,2-dithienylethene are axially coordinated to (5,10,15,20-tetratolylporphyrinato)tin(IV) in trans position, has been synthesized and fully characterized by various spectroscopic methods. We have also investigated the photoregulated fluorescence switching behavior of Sn(TTP)(DTE)2 . The fluorescence of the porphyrin macrocycle in Sn(TTP)(DTE) 2 greatly depends on the state of the 1,2-dithienyletene photochromic switch. In the open state (Sn(TTP)(o-DTE)2), the porphyrin exhibits high fluorescence intensity at 609 and 664 nm when excited at 410 nm. When the photocyclization reaction was carried out by irradiating Sn(TTP)(o-DTE)2 with the UV light (approximately 365 nm), the fluorescence intensity of the porphyrin macrocycle decreased. Back irradiation with visible light at wavelengths greater than 500 nm regenerated Sn(TTP)(o-DTE)2 and almost restored the original fluorescence spectrum. The fluorescence intensity of the porphyrin fluorophore is efficiently regulated by photochromic switching between Sn(TTP)(o-DTE)2 and Sn(TTP)(c-DTE)2 in several cycles, clearly demonstrating that the Sn(TTP)(DTE)2 can act as a system for reversible data processing using fluorescence as the detection method.     

Long-Term,Single-Molecule Imaging of Proteins in Live Cells with Photoregulated Fluxional Fluorophores

Single-molecule localization microscopy (SMLM) can reveal nanometric details of biological samples, but its high phototoxicity hampers long-term imaging in live specimens. A significant part of this phototoxicity stems from repeated irradiations that are necessary for controlled switching of fluorophores to maintain the sparse labeling of the sample. Lower phototoxicity can be obtained using fluorophores that blink spontaneously, but controlling the density of single-molecule emitters is challenging. We recently developed photoregulated fluxional fluorophores (PFFs) that combine the benefits of spontaneously blinking dyes with photocontrol of emitter density. These dyes, however, were limited to imaging acidic organelles in live cells. Herein, we report a systematic study of PFFs that culminates in probes that are functional at physiological pH and operate at longer wavelengths than their predecessors. Moreover, these probes are compatible with HaloTag labeling, thus enabling timelapse, single-molecule imaging of specific protein targets for exceptionally long times.     

A new method for the identification and the structural characterisation of carotenoid esters in freshwater microorganisms by liquid chromatography/electrospray ionisation tandem mass spectrometry

Liquid chromatography/electrospray ionisation mass spectrometry (LC/ESI-MS) has been employed to identify carotenoid esters present in raw organic extracts of pigmented freshwater microalgae and to gain structural information on these compounds. In particular, acyl carotenoid derivatives of Haematococcus pluvialis and Euglena sanguinea have been characterised by tandem mass spectrometry (MS/MS) in a quadrupole ion trap. ESI-MS/MS allows recognition of the presence of carotenoid esters in complicated mixtures without any initial chromatographic work-up and without the need to use UV-Vis photo-diode array (PDA) detectors. Product ion scans of the [M + Na]+ ion lead to known neutral losses of the C7H8 and C8H10 residues from the conjugated polyene moiety of the carotenoid unit, that permit the unambiguous identification of the carotenoid itself. These structurally relevant ions are not observed in positive or negative ion APCI (atmospheric pressure chemical ionisation) mass spectra. Moreover, the several product ions observed in positive and/or negative ion ESI-MS/MS not only are a diagnostic signature of the main structural features of the acyl chains such as length, position and unsaturation, but also display the nominal mass of the parent xanthophyll. Our methodology has been validated (i) by using esters of astaxanthin obtained from off-line purification of the H. pluvialis extracts and structurally elucidated through proton nuclear magnetic resonance (1H-NMR) spectroscopy and (ii) by product analysis of esters by alkaline hydrolysis. The characterisation of the unknown carotenoid esters of E. sanguinea is a demonstration of the capabilities of this methodology.     

Single‐Molecule Observation of the Photoregulated Conformational Dynamics of DNA Origami Nanoscissors

We demonstrate direct observation of the dynamic opening and closing behavior of photocontrollable DNA origami nanoscissors using high‐speed atomic force microscopy (HS‐AFM). First the conformational change between the open and closed state controlled by adjustment of surrounding salt concentration could be directly observed during AFM scanning. Then light‐responsive moieties were incorporated into the nanoscissors to control these structural changes by photoirradiation. Using photoswitchable DNA strands, we created a photoresponsive nanoscissors variant and were able to distinguish between the open and closed conformations after respective irradiation with ultraviolet (UV) and visible (Vis) light by gel electrophoresis and AFM imaging. Additionally, these reversible changes in shape during photoirradiation were directly visualized using HS‐AFM. Moreover, four photoswitchable nanoscissors were assembled into a scissor–actuator‐like higher‐order object, the configuration of which could be controlled by the open and closed switching induced by irradiation with UV and Vis light.