Reversible anion exchange and sensing in large porous materials built from 4,4'-bipyridine via pi...pi and H-bonding interactions

Two unusual d10 compounds, [Zn2(bipy)3(H2O)8(ClO4)2(paba)2].2(bipy).4H2O (1) and [Cd2(bipy)4(H2O)6(ClO4)2(paba)2].(bipy).5H2O (2) (bipy = 4,4'-bipyridine, paba = p-aminobenzoate), were obtained from reaction of the metal salts, bipy and paba in an EtOH/H2O mixture. The bipy ligands in the two compounds exhibit two new modes of coordinating to transition metal ions, resulting in the formation of large porous frameworks. Immersion of single crystals of 1 in an aqueous solution of NH4PF6 results in the formation of its hexafluorophosphate derivative 3 as shown by single crystal diffraction. Immersion of crystals of 3 in NaClO4 regenerates 1. Furthermore, compound 1 also shows interesting anion sensing properties in an EtOH/H2O mixture.     

Coordination molecular hats binding acetonitrile via C-H...pi interactions

The [M(3)L(3)](3+) metallo-macrocycles with syn, syn, syn conformation, self-assembled from crown ether functionalized 1,10-phenanthroline Pd(II) nitrates with naphthanoimidazole, bind a solvent CH(3)CN within the naphthanoimidazolate-built cavity through C-H...pi interactions in the crystalline state.     

Noncovalent interactions between cytosine and SWCNT: curvature dependence of complexes via pi...pi stacking and cooperative CH...pi/NH...pi

Fragments of C24H12, adapted from a variety of armchair [(n,n), (n = 5, 7, and 8)] and zigzag [(m,0) (m = 8, 10, and 12)] single-walled carbon nanotube (SWCNT), are used to model corresponding SWCNTs with different diameters and electronic structures. The parallel binding mainly through pi...pi stacking interaction, as well as the perpendicular binding via cooperative NH...pi and CH...pi between cytosine and the fragments of SWCNT have been extensively investigated with a GGA type of DFT, PW91LYP/6-311++G(d,p). The eclipsed tangential (ET) conformation with respect to the six-membered ring of cytosine and the central ring of SWCNT fragments is less stable than the slipped tangential (ST) conformation for the given fragment; perpendicular conformations with NH2 and CH ends have higher negative binding energy than those with NH and CH ends. At PW91LYP/6-311++G(d,p) level, two tangential complexes are less bound than perpendicular complexes. However, as electron correlation is treated with MP2/6-311G(d,p) for PW91LYP/6-311++G(d,p) optimized complexes, it turns out there is an opposite trend that two tangential complexes become more stable than three perpendicular complexes. This result implies that electron correlation, a primary source to dispersion energy, has more significant contributions to the pi...pi stacking complexes than to the complexes via cooperative NH...pi and CH...pi interactions. In addition, it was found for the first time that binding energies for two tangential complexes become more negative with increasing nanotube diameter, while those for three perpendicular complexes have a weaker dependence on the curvature; i.e., binding energies are slightly less and less negative. The performance of a novel hybrid DFT, MPWB1K, was also discussed.     

Oxa-bicyclocalixarenes: a new cage for anions via C-H...anion hydrogen bonds and anion...pi interactions

Density functional theory calculations indicate that the cage molecule 4 can trap F- in the gas phase (-80.5 kcal/mol) as well as in CH2Cl2 (-14.7 kcal/mol) via strong C-H...F- hydrogen bonds and pi...F- interaction.     

Computational characterization and modeling of buckyball tweezers: density functional study of concave-convex pi...pi interactions

The geometries and binding energies of a recent buckyball tweezers (C(60)H(28)) and its supramolecular complexes are investigated using recently developed density functionals (M06-L and M06-2X) that include an accurate treatment of medium-range correlation energy. The pincer part of the tweezers, corannulene, has a strong attractive interaction with C(60). However, due to the entropy penalty, the calculated gas-phase free energy of association of the C(60)@corannulene supramolecule is positive 3.5 kcal mol(-1); and this entropy penalty explains why it is difficult to observe C(60)@corannulene supramolecule experimentally. By using a pi-extended tetrathiafulvalene (TTF), in particular 9,10-bis(1,3-dithiol-2-ylidene)-9,10-dihydroanthracene (TTFAQ or C(20)H(10)S(4)), as the pincer part, we modeled a new buckyball tweezers. The geometries and binding energies of the new buckyball tweezers and its supramolecular complexes are also calculated. Due to fact that the attractive interaction between TTFAQ and C(60) is weaker than that between corannulene and C(60), the gas-phase binding free energy in the C(60)@C(60)H (32)S(8) supramolecular complex is smaller than that in the C(60)@C(60)H(28) supramolecule. We also discuss solvent effects.     

Multicoefficient extrapolated density functional theory studies of pi...pi interactions: the benzene dimer

We report tests of new (2005) and established (1999-2003) multilevel methods against essentially converged benchmark results for nonbonded interactions in benzene dimers. We found that the newly developed multicoefficient extrapolated density functional theory (DFT) methods (which combine DFT with correlated wave function methods) give better performance than multilevel methods such as G3SX, G3SX(MP3), and CBS-QB3 that are based purely on wave function theory (WFT); furthermore, they have a lower computational cost. We conclude that our empirical approach for combining WFT methods with DFT methods is a very efficient and effective way for describing not only covalent interactions (as shown previously) but also nonbonded interactions.     

Perturbing the structure of the 2-norbornyl cation through C-H...N and C-H...pi interactions

Quantum chemical studies on complexes of the 2-norbornyl cation with ammonia and benzene are described. These calculations demonstrate that the delocalized, bridged, nonclassical geometry that is usually favored for this carbocation can be perturbed significantly toward the normally less favorable classical geometry through appropriately oriented noncovalent interactions. Since such cations have been proposed as intermediates in enzyme and antibody catalyzed reactions, these results have implications for the nature of the cationic species that may be generated in the presence of electron-rich amino acid side chains of the sort that may be present in the active sites of biocatalysts.     

A new quasi-1D spin system with spin transition exhibiting novel CN...pi interactions

A new molecular tecton with a flexible conformation, 1-methyl-ethyldeneaminopyridinium, was synthesized, and its corresponding compound with [Ni(mnt)(2)](-) exhibits novel CN...pi interactions and spin transition.     

Solvent-induced aggregation through metal...metal/pi...pi interactions: large solvatochromism of luminescent organoplatinum(II) terpyridyl complexes

A dramatic color change and tremendous emission enhancement have been "switched on" upon increasing diethyl ether ratio in acetonitrile or acetone solution of [Pt(tpy)(CC-CCH)]OTf, attributed to the formation of Pt...Pt and pi-pi interactions. Two crystal forms (dark-green and red) of [Pt(tpy)(CC-CCH)]OTf, together with [Pt(tBu3-tpy)(CC-CCH)]OTf, show different crystal-packing modes as revealed by X-ray crystallography.     

Interplay of phenyl-perfluorophenyl stacking,C-H...F,C-F...pi and F...F interactions in some crystalline aromatic azines

Analysis of phenyl-perfluorophenyl stacking synthon, C-H...F, C-F...pi interactions, and F...F tetramer in three closely related azine crystal structures shows the dominance of Ar-ArF synthon while other interactions are turned on/off depending on the H/F stoichiometry in the molecule.     

Comparison of C-H...pi and hydrophobic interactions in a beta-hairpin peptide: impact on stability and specificity

We have examined the impact of C-H...pi and hydrophobic interactions in the diagonal position of a beta-hairpin peptide through comparison of the interaction of Phe, Trp, or Cha (cyclohexylalanine) with Lys or Nle (norleucine). NMR studies, including NOESY and chemical shift perturbation studies, of the Lys side chain indicates that Lys interacts in a specific geometry with Phe or Trp through the polarized C epsilon. In contrast, Nle does not interact in a specific manner with the diagonal aromatic residue. Thermal denaturation provides additional support that Lys and Nle interact in fundamentally different manners. Folding of the peptide with a diagonal Trp...Lys interaction was found to be enthalpically driven, whereas the peptide with a diagonal Trp...Nle interaction displayed cold denaturation, as did the control peptide with a diagonal Cha...Nle interaction, indicating different driving forces for interaction of Lys and Nle with Trp. These findings have significant implications for specificity in protein folding and de novo protein design.     

A 3D network of helicates fully assembled by pi-stacking interactions

The neutral dinuclear dihelicate [Cu2(L)2] x 2CH3CN (1) forms a unique 3D network in the solid state due to pi-stacking interactions, which are responsible for intermolecular antiferromagnetic coupling between Cu(II) ions.     

Coordination complexes exhibiting anion...pi interactions: synthesis, structure, and theoretical studies

The polydentate ligand 2,4,6-tris(dipyridin-2-ylamino)-1,3,5-triazine (dpyatriz) in combination with the Cu(ClO 4) 2/CuX 2 salt mixtures (X (-) = Cl (-), Br (-), or N 3 (-)) leads to the formation of molecular coordination aggregates with formulas [Cu 3Cl 3(dpyatriz) 2](ClO 4) 3 ( 2), [Cu 3Br 3(dpyatriz) 2](ClO 4) 3 ( 3), and [Cu 4(N 3) 4(dpyatriz) 2(DMF) 4(ClO 4) 2](ClO 4) 2 ( 4). These complexes consist of two dpyatriz ligands bridged via coordination to Cu (II) and disposed either face-to-face in an eclipsed manner ( 2 and 3) or parallel and mutually shifted in one direction. The copper ions complete their coordination positions with Cl (-) ( 2), Br (-) ( 3), or N 3 (-), ClO 4 (-), and N, N-dimethylformamide (DMF) ( 4) ligands. All complexes crystallize together with noncoordinate ClO 4 (-) groups that display anion...pi interactions with the triazine rings. These interactions have been studied by means of high level ab initio calculations and the MIPp partition scheme. These calculations have proven the ClO 4 (-)...[C 3N 3] interactions to be favorable and have revealed a synergistic effect from the combined occurrence of pi-pi stacking of triazine rings and the interaction of these moieties with perchlorate ions, as observed in the experimental systems.     

Binding of an acetonitrile molecule inside the ethereal cavity of a hexaarylbenzene-based receptor via a synergy of C-H...O/C-H...pi interactions

A pair of hexaarylbenzene-based receptors, which contain a circular, as well as a partially-broken, ethereal fence around the central benzene ring, bind acetonitrile molecules via a synergy of C-H...O and C-H...pi interactions, as probed by X-ray crystallography.     

Pyridinium CH...anion and pi-stacking interactions in modular tripodal anion binding hosts: ATP binding and solid-state chiral induction

The preparation of two new tripodal "pinwheel" type anion hosts based on a triethylbenzene core and bipyridinium or ethylnicotinium arms is reported. The new materials bind anions via CH...anion interactions. Complexes with Br(-) and PF(6)(-) have been characterised by X-ray crystallography as both solvates in a pure form. In the bipyridinium host CH...F interactions to PF(6)(-) induce a chiral C(3) symmetric conformation that is disrupted in the hydrate. The compound is also selective for ATP(2-) in aqueous acetonitrile.     

A critical examination of H-bonding interactions calculated using the AM1 molecular orbital method

AM 1 calculations for various intermolecular and internally hydrogen-bonding species are compared with experiment. The calculations generally provide a useful, but not perfect, means for modeling H-bonds. The average stabilization energy for 33 gas-phase hydrations of ions was 1.4, whereas that for amination of 10 ions was 4.2 kcal/mol, too weak when compared to experimental results. H-bonding distances have a tendency to be long. The tendency of AM 1 to predict multicentered H-bonds is discussed in the context of recent surveys of crystallographic data banks. Caution is recommended in comparing AM 1 results with inappropriate experiments and inadequate ab initio calculations. © 1992 John Wiley & Sons, Inc.