Structures and conformations of 1-aryl-1,4-dihydro-3(2H)-isoquinolinones

The X-ray crystal structures of series of 1-aryl-1,4-dihydro-3(2H)-isoquinolinones (1-7) have been determined. Lactame heterocyclic ring possesses more or less deformed boat conformation in all examined structures. The aryl substituent adopts the equatorial position in the structures 1-3 and the axial one in 5-7. In the structure of 4, due to extremely flattened heterocyclic ring, aryl substituent location can be named as bisectional. In all solved structures the molecules are joined into the dimers via two N-H?O hydrogen bonds. At the same time, ¹H NMR studies in DMSO-d₆ solutions were accomplished and profound analysis of ²J, ³J, and ⁵J coupling constants have shown that in isoquinolinone system the heterocyclic ring adopts the boat conformation in all investigated compounds. The stereochemical orientations of the phenyl ring at C1 do not depend on the nature of the substituent but, exclusively, on the mode of substitution. However, three forms of undulated laktam heterocyclic ring conformation in respect of 1-aryl substituent positions were confirmed by calculation (conformational analysis).     

<Superscript>1</Superscript>H NMR spectroscopy in the study of the three-dimensional structure of 7-alkoxyalkyl-3-thia-7-azabicyclo-[3.3.1]nonan-9-ones and some of their derivatives

¹H NMR spectroscopy was used to establish that 7-alkoxyalkyl-3-thia-7-azabicyclo[3.3.1]nonan-9-ones and their decarbonylated derivatives in deuterochloroform solution exist in the double chair conformation. The predominantly formed secondary alcohols isomers have preferred double chair conformation with the hydroxyl group equatorial relative to the plane of the piperidine ring. On the other hand, the epimeric alcohols have predominant boat-chair conformation; the piperidine ring takes the boat form due to intramolecular hydrogen bonding between the unshared electron pair of the nitrogen atom and hydroxyl group proton. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1716–1725, November, 2008.     

Diisophorone and related compounds,part 16.13C-Nuclear magnetic resonance spectra of 5,11-bisnordiisophorones

The¹³C-nuclear magnetic resonance spectra of a number of 5,11-bisnordiisophorones have been mapped and assigned. The results indicate that compounds of this structure usually consist of mixtures of two stereoisomers, the existence of which is ascribed to the different conformation of their ring A and the 5-methyl group attached to it. Further stereochemical implications of the spectrometric observations are discussed.

---

Diisophoron und verwandte Verbindungen, 16. Mitt.:¹³C-NMR von 5,11-Bisnordiisophoronen

Zusammenfassung Die¹³C-Kernresonanzspektren einiger 5,11-Bisnordiisophorone wurden aufgenommen und die Signale dem Kohlenstoffgerüst zugeordnet. Nach diesen Messungen bestehen die Verbindungen dieser Reihe gewöhnlich aus zwei Stereoisomeren, deren Vorkommen auf Konformationsunterschiede ihres Rings A und der daran haftenden 5-Methylgruppe zurückzuführen ist. Weitere stereochemische Folgerungen werden auf Grund der spektrometrischen Beobachtungen erörtert.

     

Unusual Conformational Behavior of 3,7-Dihetera(N,N-;N,O-;N,S-) Bicyclo[3.3.1]Nonan-9-Ols Via Nmr Analysis

Abstract

Based upon the analysis of ¹H NMR data, along with molecular modeling, it was shown that the reduction of 3,7-dihetera(N,N-; N,O-; N,S-)bicyclo[3.3.1]nonan-9-ones by LiAlH₄ led to a mixture of two stereoisomeric secondary alcohols with different orientations of the hydroxyl groups in one of the ring systems. Diaza derivatives in deuterochloroform exist in predominant chair-boat conformations. However, the replacement of nitrogen in one of the heterocycles by oxygen or sulfur led to stereoisomers one of which existed in chair-boat conformation and another in a chair–chair conformation. In all cases the boat conformation is stabilized by formation of an intramolecular hydrogen bond (IMHB) between a lone electron pair of the nitrogen atom and a proton on the pseudo axial hydroxyl group of the other ring.     

Beiträge zur Chemie der Pyrrolpigmente,LVIII Phytochrommodellstudien: Konformationsanalytische Untersuchungen an 2,3-Dihydrobilatrien-abc-Derivaten

Two 3,4-dihydropyrromethenones and two 2,3-dihydrobilatrienes-abc O-methylated at rings A and D resp. have been prepared. Their configurations were established as (Z), (E), (Z, Z, Z) and (Z, Z, Z), respectively, using¹H-NMR-techniques (NOE); they are also shown to exist predominantly in the lactam form. Within the pyrromethene fragment of the bilatrienes the pyrrolic and pyrroleninic ring type depends on the position of O-methylation. A helical all-synperiplanar conformation in solution could be established for all cases by applying the lanthanide induced shift (LIS) technique.

     

Zur Struktur der Produkte der Reaktion vonE/Z-1-Benzolsulfonyl-3-(1-pentenyl)-indol mit N-Phenylmaleinimid: Ein erster Beitrag zur Konfigurations- und Konformationsanalyse in der Vinylindol-Cycloadditionsreihe

The products2,3 of the reaction ofE/Z-1-benzenesulfonyl-3-(1-pentenyl)-indole (1) and N-phenylmaleimide were analysed by¹H-NMR spectroscopy. Exemplarily, the structure elucidation of theendo-cyclo-adduct2 b was achieved by using several NMR techniques (diff. NOE-, INDOR-measurements, decoupling experiments, spectra simulation). The¹H-NMR-spectroscopically gained prediction of relative configuration and conformation of2 b was supported on X-ray analysis. The cyclohexene ring of the new cycloadducts adopts in the liquid phase and in the crystal a slightly twisted boat conformation.

     

Synthesis and NMR spectral studies of N-chloroacetyl-2,6-diarylpiperidin-4-ones

A series of 2,6-diarylpiperidin-4-ones having electron withdrawing chloroacetyl group at the heterocyclic nitrogen were synthesized. Unambiguous characterizations of the synthesized compounds were achieved by one-dimensional ((1)H NMR and (13)C NMR) and two-dimensional (HOMOCOSY, NOESY and HSQC spectra for compounds 8 and 9 and HOMOCOSY spectrum only for 10) NMR spectroscopic data. The conformational preferences of N-chloroacetyl-2,6-diarylpiperidin-4-ones with and without alkyl substituent at C-3 and C-5 (8-14) have also been discussed using the spectral studies. The spectral data and extracted coupling constant values suggest that the compounds 8, 12 and 14 adopt flattened boat conformation whereas the remaining compounds exist in twist-boat conformations in solution with coplanar orientation of the chloroacetyl moiety present at the heterocyclic nitrogen. The substituent parameters for the chloroacetyl moiety on the heterocyclic ring carbons have also been derived and discussed elaborately on the basis of their steric, electronic and gamma-eclipsing interaction. This substituent at the nitrogen causes a substantial change on the chemical shifts of ring carbons and the associated protons.     

Study of the Steric Structure of 7-Alkoxyalkyl-3-oxa-7-azabicyclo[3.3.1]nonan-9-ones and Their Derivatives Using 1H NMR Spectroscopy

Using the ¹H NMR spectroscopic method it has been shown that 7-alkoxyalkyl-3-oxa-7-azabicyclo[3.3.1]nonan-9-ones and 7-alkoxyalkyl-3-oxa-7-azabicyclo[3.3.1]nonanes exist in deuterochloroform solution in a double chair conformation. 7-(3-Butoxypropyl)-3-oxa-7-azabicyclo[3.3.1]nonan-9-ol is a 1:1 mixture of the two stereoisomeric alcohols. One of them exists in a double chair conformation having an equatorial hydroxyl group with relation to the piperidine ring and the other in a chair-boat conformation having an axial hydroxyl group which involves an intramolecular hydrogen bond with the unshared electron pair of the nitrogen atom.     

Einige neue Thiaspirane

The synthesis of fifteen new (constitutionally nonsymmetrical) dithiaspirans having both sulfur atoms in the 7-membered ring is described. Some aspects of the conformation of the compounds are studied using¹H nmr. Conformational transmission is observed in all cases.

     

化学位移估算研究ATP构象随溶液pH值的变化

利用Johnson和Bovey的理论和方法计算了不同扭曲角χ(O4′－C1′－N9－C4)的ATP(5′-三磷酸腺苷)分子中糖环质子H1′和H2′由于环流效应引起的化学位移.H1′的化学位移与扭曲角χ有较强的依赖关系,反映了ATP在溶液中细微的构象变化.将计算结果与实验结果比较,证明在本文讨论的pH值范围(1～10)内,Mg2＋加入后,ATP的扭曲角χ在230～360°范围内变化.随溶液的pH值减小,ATP分子的构象由trans 构象通过-gauche构象转变为cis构象. 从而证明在酸性条件下, ATP倾向于以cis构象存在,而在碱性条件下trans构象更为稳定,从另一方面支持了在酸性条件下N1参与配位而在碱性条件下N7参与配位的结论.在讨论中也考虑了由pH变化所引起的环流强度的变化.     

The first construction of a 3,6-bridged ellagitannin skeleton with C4/B glucose core; synthesis of nonamethylcorilagin

The synthesis of nonamethylcorilagin is described. In the synthesis, the intramolecular Ullmann coupling afforded the (R)-hexahydroxydiphenoyl part--a characteristic bridge structure of the target molecule--when the glucopyranose ring was opened in advance. This synthesis demonstrates the first synthetic approach to a 3,6-bridged ellagitannin skeleton whose conformation of the d-glucose core is ¹C₄ or skew boat.     

Quantum-Chemical Investigation of the Electronic and Spatial Structure of 1-Vinyltetrazoles

Calculations have been carried out of the total Mulliken charges on carbon and nitrogen atoms, the relative stability, and equilibrium populations of the s-cis(R) and s-trans(R) conformers of a series of 1-vinyl-5R-tetrazoles (R = H, Me, n-Bu, tert-Bu, Ph, NH₂, I, CF₃, NO₂) by the ab initio MP2/6-31G** method. Out-of-plane structures correspond to the stable s-cis(R) conformer, and the deviation from planarity grows regularly with an increase in the bulk of the substituent. The proportion of s-trans(R) conformation increases in the same series and reaches 100% for R = tert-C₄H₉. The data of quantum-chemical calculations are in agreement with the results of investigations of the spatial structure of 1-vinyl-5R-tetrazoles by ¹H and ¹³C NMR methods. Values of the total energies of the corresponding homodesmotic reactions were calculated to assess the effect of the nature of the substituent in position 5 of the tetrazole ring on the size of the conjugation energy in planar s-trans(R) conformations of the compounds investigated. The quantum-chemical calculations carried out show that the conjugation energy decreases regularly according to the increase in electron-withdrawing properties of the substituent in position 5 of the ring.__________Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 537–548, April, 2005.     

Methyl 4‐O‐benzoyl‐2,3‐O‐isopropyl­idene‐α‐l‐rhamnopyran­oside

The title compound, C₁₇H₂₂O₆, has an exocyclic ester group at the hexopyranosyl sugar residue. The carbonyl group shows a conformation that is eclipsed with respect to the adjacent ring C—H bond. The two ester torsion angles are denoted by syn and cis conformations. One of these torsion angles is indicated to have a similar conformation in solution, as analyzed by NMR spectroscopy and a Karplus‐type relationship.     

Effects of sugar ring puckering, anti-syn interconversion and intramolecular interactions on N-glycosidic bond cleavage in 3-methyl-2��-deoxyadenosine and 2��-deoxyadenosine

The effects of structural parameters and intramolecular interactions on N-glycosidic bond length in 3-methyl-2??- deoxyadenosine (3MDA) and 2??-deoxyadenosine (DA) were investigated employing quantum mechanical methods. All calculations were performed at B3LYP/6-311++G** level in the gas phase. The N-glycosidic bond length strongly depends on sugar configuration; it is shorter in syn conformation relative to anti in many cases where they have the same sugar ring configuration. The sugar conformation can influence the N-glycosidic bond through interaction with the O4?? atom. The impact of intramolecular improper hydrogen bonds and H-H bonding interactions on N-glycosidic bond length was investigated in DA and 3MDA and their modeled structures. Improper hydrogen bonds decrease N-glycosidic bond length while H-H bonding interactions increase it.     

Invertomers at nitrogen in aziridine carboxylates by mltltinuclear (1H,13C,17O,and15N) NMR study

A confrgurational and conformational study of NH, N-acetyl- and N-sulfonylaziridine carboxylates is performed by¹H ,¹³C,¹⁷O, and¹⁵N NMR spectroscopy. The presence of acetyl and su fonyl groups on the ring nitrogen atom seems to reduce greatly the configurational stability at nitrogen.Published in Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1226–1234, September, 1995.     

Autoassembly of cage structures. 4. Stereochemistry of 2,5-di-tert-butyl-γ-butyrolactone-4-carboxy-s-(α)-phenylethylamide

The diastereoisomeric lactonamides (2a, b), obtained from the dilactone (1) and S-phenylethylamine, have been separated. X-ray crystallography shows that the high-melting isomer (2a) has theR-configuration at the chiral centers C² and C⁴, the enantiomeric conformation of the -lactone ring being of theS-type in thetwist form, intermediate between envelope ² E and semi-chair ₃ ² T. It is shown by molecular mechanics that the minimum steric energy of2a corresponds to a conformation of the heterocycle close to the envelope form₃E. Examination of van der Waals interactions shows that the calculated structure for2a is preferred. The reasons for the nonidentity of the forms of the -lactone ring of2a in the crystal and the free state are discussed. The crystal structure of2a is composed of two geometrically similar independent molecules associated along the axis by weak hydrogen bonds of two types, the energies of which have been estimated from the v_XH values, which are related by the expression v_XH=f(R_X...O), where X=N, O.For previous communication, see [1].N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, 117977 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 7, pp. 1601–1611, July, 1992.     

Structure of 1-β-d-xylofuranosyluracil in the crystal and in solution

The molecular and crystal structure of 1-β-d-xylofuranosyluracil hydrate was established by X-ray diffraction analysis. The mutual arrangement of the xylofuranose fragment and the nucleic base corresponds to the anti conformation. The furanose ring adopts a C-envelope conformation. The structure of the nucleoside in a DMSO-d₆ solution has been determined by¹H NMR spectroscopy. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1378–1380, July, 1998.     

Sequence effects in structures of the dinucleotides d-pApT AND d-pTpA

The H1', H2' and H2″ regions of the 270-MHz PMR spectra of two deoxydinucleotides, d-pTpA and d-pApT, have been analyzed. The coupling constants in the sugar ring indicate that both A and T sugars have a tendency to acquire ²E conformations. There is also a marginal difference in the ²E populations of the T sugar in the two dinucleotides. The trends in the chemical shifts of base protons indicate different stacking of the bases in d-pApT and d-pTpA. The sequence effects on base stacking and pentose conformation are discussed.     

5‐Phen­yl‐1,3,4‐thia­diazol‐2‐yl 2,3,4,6‐tetra­‐O‐acet­yl‐1‐thio‐β‐d‐glucopyran­oside

The structure of the title compound, C₂₂H₂₄N₂O₉S₂, is described. This compound consists of a sugar ring and a heterocyclic base linked unusually by an S atom. The sugar is in a ⁴C₁ chair conformation and forms dihedral angles of 49.54 (4) and 33.42 (5)° with the thia­diazole and phen­yl rings, respectively. The S atom occupies an equatorial position of the sugar ring and lies 1.807 (2) Å out of the corresponding mean plane.