Supramolecular structures containing ‘isolated’ pentaborate anions and non-metal cations: Crystal structures of [Me3NCH2CH2OH][B5O6(OH)4] and [4-MepyH, 4-Mepy][B5O6(OH)4]

The solid-state structures of two non-metal pentaborates [Me₃NCH₂CH₂OH][B₅O₆(OH)₄] (1) and [4-MepyH, 4-Mepy][B₅O₆(OH)₄] (2) have been determined by single-crystal X-ray diffraction methods. Structures 1 and 2 both contain supramolecular pentaborate frameworks held together by extensive H-bond interactions. The framework of 1 exists essentially as planes of pentaborate anions linked via three pairwise ‘planar’ β → α interactions, with a fourth β → β interaction crosslinking the planes. The framework of 2 is very similar except that one of the three pairwise linkages within the plane is replaced by pairwise ‘step-like’ bifurcated H-bonds to both α sites of a neighboring anion. The cations in 1 and the cations and neutral 4-Mepy ligands in 2 are present in the framework cavities and channels, with additional H-bond interactions existing between cations and anions.     

Halichonadins G-J, new sesquiterpenoids from a sponge Halichondria sp.

Three new dimeric sesquiterpenoids, halichonadins G-I (1-3), and one new eudesmane sesquiterpenoid possessing a 1-phenethyl urea moiety, halichonadin J (4), were isolated from a marine sponge Halichondria sp. Halichonadins G (1) and H (2) are homo-dimers of eudesmane sesquiterpenoid, linked through a methyl 2-{1-(2-amino-2-oxoethyl)ureido}acetate fragment and a 2-hydroxymalonamide fragment, respectively, while halichonadin I (3) is a new hetero-dimer of eudesmane sesquiterpenoid linked through a urea fragment. The structures of 1-4 were elucidated on the basis of spectroscopic data.     

Syntheses of rac/meso-{PhP(3-t-Bu-C5H3)2}-Zr{RN(CH2)3NR}, structural analyses of rac-{PhP(3-t-Bu-C5H3)2}Zr{RN(CH2)3NR} (where R is SiMe3 or Ph), and meso to rac isomerization

Syntheses of rac/meso-{PhP(3-t-Bu-C₅H₃)₂}Zr{Me₃SiN(CH₂)₃NSiMe₃} (rac-3/meso-3) and rac/meso-{PhP(3-t-Bu-C₅H₃)₂}Zr{PhN(CH₂)₃NPh} (rac-4/meso-4) were achieved by metallation of K₂[PhP(3-t-Bu-C₅H₃)₂] · 1.3 THF (2) with Zr{RN(CH₂)₃NR}Cl₂(THF)₂ (where R = SiMe₃ or Ph, respectively) using ethereal solvent. These isomeric pairs were characterized by ¹H, ¹³C{¹H}, and ³¹P{¹H} NMR spectroscopy; rac-3 and rac-4 were also examined via single crystal X-ray crystallography. The structures of rac-3 and rac-4 are notable in the tendency of the cyclopentadienyl rings towards η³ coordination. While isolated samples of rac-3/meso-3 and rac-4/meso-4 slowly isomerize in tetrahydrofuran-d₈ to equilibrium ratios, the isomerization rate for 3 is more than 15-fold greater than that for 4. In addition, equilibrium ratios are rapidly reached when isolated samples of rac-3/meso-3 and rac-4/meso-4 are exposed to tetrabutylammonium chloride in tetrahydrofuran-d₈ solvent. We propose that a nucleophile (either chloride or the phosphine interannular linker) brings about dissociation of one cyclopentadienyl ring, thus promoting the rac/meso isomerization mechanism.     

A substituent directed regioselective synthesis of aryl/pyronyl pendant unusual adipate and tetrahydronaphthalene

An efficient regioselective synthesis of pyronyl pendant ethyl methylthiocarbonylalkanoates 5 has been delineated from the base catalyzed reaction of suitably functionalized 2-pyranone 1 and 2-carbethoxycycloalkanones 2, 6 through successive substitution and regioselective ring opening by in situ generated mercaptide ion. To assess the effect of C-4 substituent on regioselectivity, reactions of 6-aryl-3-cyano-4-(piperidin-1-yl)-2-oxopyran 8 with 2-carbethoxycyclohexanone 6a and 2-carbethoxy-2-methylcyclohexanone 6b were carried out separately under analogous reaction conditions but the compounds isolated were identical and characterized as 4-aryl-8-methyl-2-piperidin-1-yl-5,6,7,8-tetrahydronaphthalene-1-carbonitriles 9. Ethyl 2-(5-amino-4′-bromo-4,6-dicyanobiphenyl-3-yl)-5-methylsulfanylcarbonylpentanoate 10 has also been prepared through base catalyzed ring transformation of ethyl 2-[6-(4-bromophenyl)-3-cyano-2-oxo-2H-pyran-4-yl]-5-methylsulfanylcarbonylpentanoate 5d by malononitrile in DMF.     

A novel synthesis of aryl tethered imidazo[4,5-b]pyrazin-2-ones through in situ ring construction and contraction

An innovative synthesis of aryl tethered 1,3-dimethylimidazo[4,5-b]pyrazin-2-ones 4 and 6 has been delineated through base catalyzed ring transformation of 6-aryl-4-(piperidin-1-yl)-2H-pyran-2-one-3-carbonitriles 1 and methyl 6-aryl-4-methylsulfanyl-2H-pyran-2-one-3-carboxylates 5 with 7-acetyl-1,3-dimethyllumazine 2 with subsequent ring contraction of the fused pyrimidine to an imidazole ring. An additional product, methyl [6-(1,3-dimethyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyrazin-5-yl)-4-thiophen-2-ylpyran-2-ylidene]acetate 8b, was also isolated from the reaction of 5 and 2, as a minor constituent.     

Synthesis of new calix[4]pyrrole derivatives via 1,3-dipolar cycloadditions

Octamethylcalix[4]pyrrole-2-carbaldehyde 1 and 3-(octamethylcalix[4]pyrrol-2-yl)propenal 5 were used as precursors of azomethine ylides, which were trapped in situ with a range of dipolarophiles, such as 1,4-benzoquinone, 1,4-naphthoquinone, and fumaronitrile. Aldehyde 1 showed very low reactivity but the azomethine ylide generated from the reaction of aldehyde 5 with N-methylglycine could be trapped with those dipolarophiles to afford new β-substituted octamethylcalix[4]pyrrole derivatives in moderate yields. The resulting cycloadducts show high affinity constants for fluoride and acetate anions; compounds 7 and 8 display sharp changes in color in the presence of these anions.     

Synthetic, X-ray structural and protonation studies of CpCr(CO)2SPy and CpCr(CO)2SPym (SPy = C5H4NS, SPym = C4H3N2S)

The facile reaction of [CpCr(CO)₃]₂ (Cp = η⁵-C₅H₅) (1) with one mole equivalent of 2,2′-dithiodipyridine ((C₅H₄NS)₂(SPy)₂) at ambient temperature led to the isolation of dark brown crystalline solids of CpCr(CO)₂(η²-SPy) (2) in ca. 72% yield. 2 undergoes quantitative conversion to CpCrCl₂(η¹-SPyH) (3) with HCl. The reaction 1 with one mole equivalent of 2-mercaptopyrimidine (C₄H₃N₂SHHSPym) at ambient temperature led to the isolation of reddish-brown crystalline solids of CpCr(CO)₂(η²-SPym) (4) and green solids of CpCr(CO)₃H (5) in yields of ca. 42% and 46%, respectively. Reaction of 4 with HCl and subsequent workup in acetonitrile resulted in the cleavage of the thiolate ligand, giving the 15-electron chromium(III) species CpCrCl₂(CH₃CN) (6) and free 2-mercaptopyrimidine. The complexes 2-4 have been determined by single X-ray diffraction analysis.     

Large-scale synthesis of 1,1,3,3,6-pentamethyl-1,3-disilaindan-5-ol via a CoBr2/Zn-catalyzed [2+2+2] cycloaddition reaction

1,1,3,3,6-Pentamethyl-1,3-disilaindan-5-ol (2) is a key intermediate in the synthesis of new sila-substituted gonadotropin releasing hormone receptor antagonists, such as 1. In order to produce sufficient quantities of 1 for pharmacological and toxicological evaluation, an efficient synthesis of 2 has been developed. (1,1,3,3,6-Pentamethyl-1,3-disilaindan-5-yl)methanal (11) was synthesized in a one-pot procedure. CoBr₂/Zn-catalyzed [2+2+2] cycloaddition of diyne 3 with the commercially available monoalkyne 15 was achieved through a slow addition of 3 and CoBr₂ to a mixture of 15 and zinc powder in refluxing acetonitrile, giving rise to 5-(diethoxymethyl)-1,1,3,3,6-pentamethyl-1,3-disilaindane (14). In-situ aqueous acidification yielded 11. Conversion to 2 was then achieved via a Baeyer-Villiger oxidation followed by hydrolysis under basic condition. This novel methodology is useful, not only for the rapid, large-scale synthesis of 2, but also for the synthesis and development of new sila-substituted drugs derived from 11.     

Chemically modified oximato complexes of titanium(IV) isopropoxide as new precursors for the sol-gel preparation of nano-sized titania: Crystal and molecular structure of [Ti{ONC10H16}4·2CH2Cl2]

Reactions of [Ti(OPrⁱ)₄] with various oximes, in anhydrous refluxing benzene yielded complexes of the type [Ti{OPrⁱ}_4−n{L}_n], where, n = 1-4 and LH = (CH₃)₂CNOH (1-4), C₉H₁₆CNOH (5-8) and C₉H₁₈CNOH (9-12). The compounds were characterized by elemental analyses, molecular weight measurements, FAB-mass, FT-IR and NMR (¹H, ¹³C{¹H}) spectral studies. The FAB-mass spectra of mono- (1), and di- (2), (6), (10) substituted products indicate their dimeric nature and that of tri- (3) and tetra- (4), (8) substituted derivatives suggest their monomeric nature. Crystal and molecular structure of [Ti{ONC₁₀H₁₆}₄·2CH₂Cl₂] (8A) suggests that the oximato ligands bind the metal in a dihapto η²-(N, O) manner, leading to the formation of an eight coordinated species. Thermogravimetric curves of (3), (6) and (10) exhibit multi-step decomposition with the formation of TiO₂ as the final product in each case, at 900 °C. Low temperature (∼600 °C) sol-gel transformations of (2), (3), (4), (6), (7) and (8) yielded nano-sized titania (a), (b), (c), (d), (e) and (f), respectively. Formation of anatase phase in all the titania samples was confirmed by powder XRD patterns, FT-IR and Raman spectroscopy. SEM images of (a), (b), (c), (d), (e) and (f) exhibit formation of nano-grains with agglomer like surface morphologies. Compositions of all the titania samples were investigated by EDX analyses. The absorption spectra of the two representative samples, (a) and (f) indicate an energy band gap of 3.17 eV and 3.75 eV, respectively.     

Tin(IV) complexes obtained by reacting 2-benzoylpyridine-derived thiosemicarbazones with SnCl4 and Ph2SnCl2

Reaction of 2-benzoylpyridine thiosemicarbazone (H2Bz4DH, HL1) and its N(4)-methyl (H2Bz4Me, HL2) and N(4)-phenyl (H2Bz4Ph, HL3) derivatives with SnCl₄ and diphenyltin dichloride (Ph₂SnCl₂) gave [Sn(L1)Cl₃] (1), [Sn(L1)PhCl₂] (2), [Sn(L2)Cl₃] (3), (4) [Sn(L3)PhCl₂] (5) and [Sn(L3)Ph₂Cl] (6). Infrared and ¹H, ¹³C and ¹¹⁹Sn NMR spectra of 1-3, 5 and 6 are compatible with the presence of an anionic ligand attached to the metal through the N_py-N-S chelating system and formation of hexacoordinated tin complexes. The crystal structures of 1-3, 5 and 6 show that the geometry around the metal is a distorted octahedron formed by the thiosemicarbazone and either chlorides or chlorides and phenyl groups. The crystal structure of 4 reveals the presence of and trans [Ph₂SnCl₄]²⁻.     

The preparation of [closo-1-CB9H8-1-COOH-10-(4-C3H7C5H9S)] as intermediate to polar liquid crystals

The preparation of iodo acid [closo-1-CB₉H₈-1-COOH-10-I]⁻ (1) is optimized and scaled from 1 to 40 g of B₁₀H₁₄. The improved preparation of the [arachno-6-CB₉H₁₃-6-COOH]⁻ (5) uses four times smaller volume and can be run conveniently in up to 40 g scale in a 3-L vessel. The optimized oxidation of 5 to [closo-2-CB₉H₉-2-COOH]⁻ (4) requires less oxidant, 12 times smaller volume, and significantly shorter reaction time. The overall yields of the iodo acid 1 as the [NMe₄]⁺ salt are typically 8-10% (10-12 g) for 40 g of B₁₀H₁₄. The iodo acid 1 was transformed to amino acid 8, then to dinitrogen acid 10, and finally to sulfonium acid 2[3] in overall yield of about 13%. The search for a more efficient phosphine ligand for the Pd-catalyzed amination process was not fruitful. Three routes to the sulfonium acid 2[n] were investigated, and the best yield of about 47% was obtained for Cs₂CO₃-assisted cycloalkylation. Liquid crystalline ester of acid 2[3] and 4-butoxyphenol was prepared and investigated.     

The case of a Cd2Cu2 complex containing an apparently C3-symmetric ligand: Erroneous ligand-structure assignment by X-ray diffraction data analysis

A simplified synthesis of a previously reported Cd₂Cu₂ complex 4 was developed in order to have a more readily available source of 1,3,5-tris(trifluoromethyl)-cyclohexane-cis,cis-1,3,5-triol 1, a unique tridentate ligand, only tentatively identified elsewhere. Attempts to liberate the ligand from 4 resulted in the sole formation of 2,4,6-tris(trifluoromethyl)-tetrahydropyran-cis,cis-2,4,6-triol (2); no traces of 1 were detected. A newly conducted X-ray analysis of complex 4 led to diffraction data that could be explained either by the previously reported structure for 4 or by the statistically disordered structure 5, containing ligand 2 rather than 1. Whereas refinement of both models led to equivalent merit factors, mass spectral data and elemental analysis of the crystals revealed unequivocally the sole presence of the tetrahydropyran derivative within the complex and proved thus the erroneous structure assignment 4 previously published for compound 5.     

Complexes of titanium and zirconium based on [C5Me4CH2-(2-C5H4N)] ligand

Half-sandwich [η⁵:η¹-κN-C₅Me₄CH₂-(2-C₅H₄N)]MCl₃ (M = Ti (4), Zr (5)) and sandwich [η⁵-C₅Me₄CH₂-(2-C₅H₄N)][η⁵-C₅Me₅]ZrCl₂ (6) ring-peralkylated complexes have been prepared and characterized. Evidence of the intramolecular coordination of the side-chain pyridyl group both in 4 and 5 in solutions is provided by NMR spectroscopy data. Crystal structure of an adduct 5-py with one molecule of pyridine has been established by X-ray diffraction analysis.     

Stereospecific mono- and difluorination of the C7-bridge of norbornenes

Fluorinated norbornenes are very desirable monomers in the semiconductor and high-temperature polyimide industries. We describe herein a synthetic strategy for the stereospecific mono- or difluorination of the C₇-carbon in norbornene systems beginning with 7-ketonadic anhydride 1. In particular, anti-7-fluoro methyl diester 4 and its 7,7-difluoronadic analog 7 can be prepared from 1 in 3 or 4 steps: saponification, reduction (for 4), esterification, fluorination with DAST. In addition, anti-7-fluoro-syn-7-fluoromethylnadic diester 16 is obtained from epoxide 14, and dimethyl 7,7-difluorobicyclo[2.2.2]oct-5-ene-2,3-dicarboxylate (17) from ketone 15. Anchimeric assistance of the norbornene double bond guides the introduction of attacking fluoride anions stereospecifically anti to the olefinic linkage.     

Vitamin B6 cofactor derived chemosensor for the selective colorimetric detection of acetate anions

A novel vitamin B₆ cofactor derived anion sensor L for the selective colorimetric detection of acetate has been developed by the condensation of pyridoxal and 2-aminothiophenol. The sensor L showed a noteworthy change in the visible region of the spectrum and was detected by the ‘naked-eye’ for both acetate and fluoride anions in DMSO but selectively for acetate in DMSO/H₂O (88:12, v/v). The anion recognition ability of L was investigated by spectroscopic (UV–vis and ¹H NMR) and DFT methods.     

Syntheses of platinum(II) complexes of cyclo-octenyl group and isolation of a self-assembled oxo-bridged macrocyclic complex [Pt4(Spy)4(C8H12-O-C8H12)2]

Reactions of [Pt₂(μ-Cl)₂(C₈H₁₂OMe)₂] (1) (C₈H₁₂OMe = 8-methoxy-cyclooct-4-ene-1-yl) with various anionic chalcogenolate ligands have been investigated. The reaction of 1 with Pb(Spy)₂ (HSpy = pyridine-2-thiol) yielded a binuclear complex [Pt₂(Spy)₂(C₈H₁₂OMe)₂] (2). A trinuclear complex [Pt₃(Spy)₄(C₈H₁₂OMe)₂] (3) was isolated by a reaction between 2 and [Pt(Spy)₂]_n. The reaction of 1 with HSpy in the presence of NaOMe generated 2 and its demethylated oxo-bridged tetranuclear complex [Pt₄(Spy)₄(C₈H₁₂-O-C₈H₁₂)₂] (4). Treatment of 1 with ammonium diisopropyldithiophosphate completely replaced C₈H₁₂OMe resulting in [Pt(S₂P{OPrⁱ}₂)₂] (5), whereas non-rigid 5-membered chelating ligand, Me₂NCH₂CH₂E⁻, produced mononuclear complexes [Pt(ECH₂CH₂NMe₂)(C₈H₁₂OMe)] (E = S (6), Se (7)). These complexes have been characterized by elemental analyses, NMR (¹H, ¹³C{¹H}, ¹⁹⁵Pt{¹H}) and absorption spectroscopy. Molecular structures of 2, 3, 4, 5 and 7 were established by single crystal X-ray diffraction analyses. Thermolysis of 2, 6 and 7 in HDA gave platinum nanoparticles.     

Synthesis of fluorine containing glycolurils and oxazolines from oxides of internal perfluoroolefins

The reaction of oxides of internal perfluoroolefins 1-3 with urea gave two kinds of novel fluorine containing N-heterocyclic compounds depending on the solvent nature: 1,5-bis(perfluoroalkyl)tetraazabicyclo[3.3.0]octane-3,7-diones 4a-c and 2-amino-5-fluoro-4,5-bis(perfluoroalkyl)-4,5-dihydrooxazol-4-ols 7a-d. Use of polar dimethylsulfoxide, N,N-dimethylacetamide and acetonitrile afforded glycolurils 4a-c in moderate yields. In dioxane, unexpected cyclization occurred resulting in oxazolines 7a-d in high yields. A similar reaction of oxiranes 2, 3 with urea in aqueous dioxane gave mixtures of 4,5-dihydroxy-4,5-bis(perfluoroalkyl)imidazolidine-2-ones 9b, c, glycolurils 4b, c and oxazolines 7b-d. The molecular structure of trans-isomers of oxazoline 7b and imidazolidine 9b has been established by X-ray crystallography.     

Sodium dithionite initiated fluoroalkylation of trimethoxybenzenes, mesitylene and pyrroles with BrCF2CF2Br

Sodium dithionite initiated reaction of 1,2-dibromotetrafluoroethane with 1,3,5-trimethoxybenzene (1a) in an acetonitrile-water mixture proceeded efficiently at ambient temperature to give 1-(2-bromotetrafluoroethyl)-2,4,6-trimethoxybenzene (2) almost quantitatively. Similar reaction with 1,2,3-trimethoxybenzene (1b) gave only reasonable yield of regioisomers of (2-bromotetrafluoroethyl)-trimethoxybenzenes 3 and 4 and small amount of a substitution product of the central trimethoxy group, 1-(2-bromotetrafluoroethyl)-2,6-dimethoxybenzene (5). The reaction with mesitylene (6) gave complex mixtures from which, depending on the temperature and a mesitylene/BrCF₂CF₂Br ratio, the expected (2-bromotetrafluoroethyl)mesitylene (8) or a dimeric product, 4,4′-bis(2-bromo-1,1,2,2-tetrafluoroethyl)-1,3,5,1′,3′,5′-hexamethylbicyclohexyl-2,5,2′,5′-tetraene (7), were isolated in a yield of 18 and 13%, respectively. The reactions of BrCF₂CF₂Br with pyrrole (9) and 1-methylpyrrole (11) gave the respective alkylated compounds, 2-(2-bromotetrafluoroethyl)pyrrole (10) and 2-(2-bromotetrafluoroethyl)-1-methylpyrrole (12) in over 70% yields; the former was found to be fairly unstable. The reactivity of the terminal bromine atom in 1-(2-bromotetrafluoroethyl)-2,4,6-trimethoxybenzene (2) was also investigated.     

Synthesis and characterization of scandium complexes with reduced ligands: Crystal structures of Cp∗ScI2, [Cp∗ScI(bpy)]2, and [Cp∗ScCl(bpy)]2

The synthesis and characterization of complexes containing a Cp∗Sc(R₂bpy) (Cp∗ = pentamethylcyclopentadienyl, bpy = 4,4′-R,R-2,2′-bipyridine, R = H, Me) motif are described. Cp∗ScI₂ (1) was prepared from Cp∗Sc(acac)₂ (acac = acetylacetonate) and AlI₃ (2 equiv) in pentane. Compound 1 reacted with bipyridine and 4,4′-dimethyl-2,2′-bipyridine (dmb) in benzene to yield Cp∗ScI₂(bpy) (3) and Cp∗ScI₂(dmb) (4), respectively. Compound 3 was reduced by alkali metal reductants such as Na/Hg, NaK₂, and K in aromatic solvents to yield [Cp∗ScI(bpy)]₂ (5). The chloride analog of 5, [Cp∗ScCl(bpy)]₂ (7), was prepared from Cp∗ScCl₂ by salt metathesis with Li₂(dme)₂bpy (6) (dme = dimethoxyethane) in toluene. Compounds 1, 5, and 7 have been structurally characterized. Analysis of the bond distances of the bipyridine ligands in 5 and 7, together with infrared and UV/vis spectroscopic data, suggest that the bipyridine ligands in these molecules exist as radical anions. The bipyridine ligands in 5 and 7 are arranged co-facially and are in close proximity (?3.30 Å), suggesting the presence of a π-π interaction.     

Cycloaddition of methyl 2-(2,6-dichorophenyl)-2H-azirine-3-carboxylate to electron-rich 2-azadienes

tert-Butyldimethylsililoxy-2-aza-1,3-butadienes react with 2H-azirine 3 leading to Diels-Alder cycloadducts in moderate yields. The reactions are endo- and regioselective with the azirine being added by its less hindered face. There is only one product in the case of 1b, 4b. There are two isomers (4 and 5) from 1a, 1c and 1d. A different result was obtained with the diene 1e. Diene 1e formed products 4e and 8. Some of compounds 4 and 5 have been hydrolysed leading to functionalised aziridines 7. Compound 8 gave aziridine 9.