Theoretical analysis of the mechanism of palladium(II) acetate-catalyzed oxidative Heck coupling of electron-deficient arenes with alkenes: effects of the pyridine-type ancillary ligand and origins of the meta-regioselectivity

A systematic theoretical study is carried out on the mechanism for Pd(II)-catalyzed oxidative cross-coupling between electron-deficient arenes and alkenes. Two types of reaction pathways involving either a sequence of initial arene C-H activation followed by alkene activation, or the reverse sequence of initial alkene C-H activation followed by arene activation are evaluated. Several types of C-H activation mechanisms are discussed including oxidative addition, σ-bond metathesis, concerted metalation/deprotonation, and Heck-type alkene insertion. It is proposed that the most favored reaction pathway should involve an initial concerted metalation/deprotonation step for arene C-H activation by (L)Pd(OAc)(2) (L denotes pyridine type ancillary ligand) to generate a (L)(HOAc)Pd(II)-aryl intermediate, followed by substitution of the ancillary pyridine ligand by alkene substrate and direct insertion of alkene double bond into Pd(II)-aryl bond. The rate- and regio-determining step of the catalytic cycle is concerted metalation/deprotonation of arene C-H bond featuring a six-membered ring transition state. Other mechanism alternatives possess much higher activation barriers, and thus are kinetically less competitive. Possible competing homocoupling pathways have also been shown to be kinetically unfavorable. On the basis of the proposed reaction pathway, the regioselectivity predicted for a number of monosubstituted benzenes is in excellent agreement with experimental observations, thus, lending further support for our proposed mechanism. Additionally, the origins of the regioselectivity of C-H bond activation is elucidated to be caused by a major steric repulsion effect of the ancillary pyridine type ligand with ligands on palladium center and a minor electronic effect of the preinstalled substituent on the benzene ring on the cleaving C-H bond. This would finally lead to the formation of a mixture of meta and para C-H activation products with meta products dominating while no ortho products were detected. Finally, the multiple roles of the ancillary pyridine type ligand have been discussed. These insights are valuable for our understanding and further development of more efficient and selective transition metal-catalyzed oxidative C-H/C-H coupling reactions.     

硅烯及取代硅烯与饱和键插入反应的量子化学研究

用量子化学的密度泛函理论(DFT)在6-311G水平上对硅烯及其取代物与甲烷的C-H键进行插入反应的势能面进行了系统地研究。用IRC方法对过渡态进行了验证。并用组态混合模型讨论了反应势垒(△E^≠)和反应热(△H)与SiXY的单-三态激发能△Est的关系。我们发现,硅烯SiXY的△Est是控制反应的主要因素,取代基的电负性越大,取代基越多,π电子给予越强,SiXY的△Est就越大,插入反应的活化能就越大,放热就越小。     

Pd(II)-catalyzed ortho trifluoromethylation of arenes and insights into the coordination mode of acidic amide directing groups

A Pd(II)-catalyzed trifluoromethylation of ortho C-H bonds with an array of N-arylbenzamides derived from benzoic acids is reported. N-Methylformamide has been identified as a crucial promoter of C-CF(3) bond formation from the Pd center. X-ray characterization of the C-H insertion intermediate has revealed a rare coordination mode of acidic amides as directing groups and the origin of their capacity in directing C-H activation.     

Kinetico-mechanistic studies of cyclometalating C-H bond activation reactions on Pd(ii) and Rh(ii) centres: The importance of non-innocent acidic solvents in the process

The activation of C-H bonds in homogeneous systems has been the subject of study for many years due to its involvement in important industrial catalytic processes. A large number of reviews on the different areas involved have appeared, but those dealing with kinetic studies, including activation parameters, are rather scarce due to the severe difficulties in interpreting experimental data. In this perspective, the information available from kinetico-mechanistic studies of cyclometalation reactions on Pd(ii) and Rh(ii) centres via C-H bond activation is considered. Experimental results from studies performed on complexes of these metal centres indicate that the historically accepted electrophilic substitution classification is not a satisfactory mechanistic term for the process occurring during the reaction. A definite acid-assisted phenomenon is evident for all the processes studied, which contradicts the expected need for a proton abstractor in the reaction. This is even more surprising when considering the expected hydrolysis of M-C bonds in such acidic media, indicating that metalation prevails under these conditions. Only the presence of coordinated acid molecules in solvolytic carboxylic acid media can explain the observations. The fine tuning between the proton abstraction capacity of a coordinated RCO(2)H molecule and its Lewis basicity results in a unique reactivity trend. DFT calculations carried out for these acid-assisted processes fully agree with the experimental trends observed.     

Transition-state energy and position along the reaction coordinate in an extended activation strain model.

We investigate palladium-induced activation of the C-H, C-C, C-F, and C-Cl bonds in methane, ethane, cyclopropane, fluoromethane, and chloromethane, using relativistic density functional theory (DFT) at ZORA-BLYP/TZ2P. Our purpose is to arrive at a qualitative understanding, based on accurate calculations, of the trends in activation barriers and transition state (TS) geometries (e.g. early or late along the reaction coordinate) in terms of the reactants' properties. To this end, we extend the activation strain model (in which the activation energy Delta E(not equal) is decomposed into the activation strain Delta E(not equal)(strain) of the reactants and the stabilizing TS interaction Delta E(not equal)(int) between the reactants) from a single-point analysis of the TS to an analysis along the reaction coordinate zeta, that is, Delta E(zeta)=Delta E(strain)(zeta)+Delta E(int)(zeta). This extension enables us to understand qualitatively, trends in the position of the TS along zeta and, therefore, the values of the activation strain Delta E(not equal)(strain)=Delta E(strain)(zeta(TS)) and TS interaction Delta E(not equal)(int)=Delta E(int)(zeta(TS)) and trends therein. An interesting insight that emerges is that the much higher barrier of metal-mediated C-C versus C-H activation originates from steric shielding of the C-C bond in ethane by C-H bonds. Thus, before a favorable stabilizing interaction with the C-C bond can occur, the C-H bonds must be bent away, which causes the metal-substrate interaction Delta E(int)(zeta) in C-C activation to lag behind. Such steric shielding is not present in the metal-mediated activation of the C-H bond, which is always accessible from the hydrogen side. Other phenomena that are addressed are anion assistance, competition between direct oxidative insertion (OxIn) versus the alternative S(N)2 pathway, and the effect of ring strain.     

A theoretical study of alcohol oxidation by ferrate

The conversion of methanol to formaldehyde mediated by ferrate (FeO(4)2-), monoprotonated ferrate (HFeO4-), and diprotonated ferrate (H2FeO4) is discussed with the hybrid B3LYP density functional theory (DFT) method. Diprotonated ferrate is the best mediator for the activation of the O-H and C-H bonds of methanol via two entrance reaction channels: (1) an addition-elimination mechanism that involves coordination of methanol to diprotonated ferrate; (2) a direct abstraction mechanism that involves H atom abstraction from the O-H or C-H bond of methanol. Within the framework of the polarizable continuum model (PCM), the energetic profiles of these reaction mechanisms in aqueous solution are calculated and investigated. In the addition-elimination mechanism, the O-H and C-H bonds of ligating methanol are cleaved by an oxo or hydroxo ligand, and therefore the way to the formation of formaldehyde is branched into four reaction pathways. The most favorable reaction pathway in the addition-elimination mechanism is initiated by an O-H cleavage via a four-centered transition state that leads to intermediate containing an Fe-O bond, followed by a C-H cleavage via a five-centered transition state to lead to formaldehyde complex. In the direct abstraction mechanism, the oxidation reaction can be initiated by a direct H atom abstraction from either the O-H or C-H bond, and it is branched into three pathways for the formation of formaldehyde. The most favorable reaction pathway in the direct abstraction mechanism is initiated by C-H activation that leads to organometallic intermediate containing an Fe-C bond, followed by a concerted H atom transfer from the OH group of methanol to an oxo ligand of ferrate. The first steps in both mechanisms are all competitive in energy, but due to the significant energetical stability of the organometallic intermediate, the most likely initial reaction in methanol oxidation by ferrate is the direct C-H bond cleavage.     

Mechanistic analysis of iridium(III) catalyzed direct C-H arylations: a DFT study

In a recent experimental work the Ir complex [Ir(cod)(py)(PCy(3))](PF(6)) (that is, Crabtree's catalyst) has been shown to catalyze the C-H arylation of electron-rich heteroarenes with iodoarenes using Ag(2)CO(3) as base. For this process, an electrophilic metalation mechanism, (S(E)Ar) has been proposed as operative mechanism rather than the concerted metalation-deprotonation (CMD) mechanism, widely implicated in Pd-catalyzed arylation reactions. Herein we have investigated the C-H activation step for several (hetero)arenes catalyzed by a Ir(III) catalyst and compared the data obtained with the results for the Pd(II)-catalyzed C-H bond activation. The calculations demonstrate that, similar to Pd(II)-catalyzed reactions, the Ir(III)-catalyzed direct C-H arylation occurs through the CMD pathway which accounts for the experimentally observed regioselectivity. The transition states for Ir(III)-catalyzed direct C-H arylation feature stronger metal-C((arene)) interactions than those for Pd(II)-catalyzed C-H arylation. The calculations also demonstrate that ligands with low trans effect may decrease the activation barrier of the C-H bond cleavage.     

DFT study of the mechanism of benzocyclobutene formation by palladium-catalysed C(sp3)-H activation: role of the nature of the base and the phosphine

DFT(B3PW91) calculations of the mechanism of the intramolecular C(sp(3))-H arylation of 2-bromo-tert-butylbenzene to form benzocyclobutene catalysed by Pd(PR(3)) (R = Me, (t)Bu) and a base (acetate, bicarbonate, carbonate) show that the preferred mechanism is highly dependent on the nature of the phosphine and the base used in the calculations. With the experimental reagents (P(t)Bu(3) and carbonate) the rate-determining step is C-H activation with the base coordinated trans to the C-H bond. An agostic interaction of a geminal C-H bond with respect to the bond to be cleaved induces a lowering of the activation barrier.     

Key mechanistic features of enantioselective C-H bond activation reactions catalyzed by [(chiral mono-N-protected amino acid)-Pd(II)] complexes

Monoprotected chiral amino acids have recently been established as a class of ligand scaffolds for effecting Pd-catalyzed enantioselective C-H bond activation reactions. However, to elucidate the mechanistic details and controlling factors of these reactions, more comprehensive studies are needed. In this work we report computational investigations into the key mechanistic features of enantioselective C-H bond activation reactions catalyzed by a [chiral (mono-N-protected amino acid)-Pd(II)] complex. Structural analysis points to a C-H insertion intermediate in which the nitrogen atom of the ligand is bound as a neutral σ-donor. The formation of this C-H insertion intermediate could, in principle, proceed via a "direct C-H cleavage" or via "initial N-H bond cleavage followed by C-H cleavage". The computational studies presented herein show that the pathway initiated by N-H bond cleavage is more kinetically favorable. It is shown that the first step of the reaction is the N-H bond cleavage by the coordinated acetate group (OAc). In the next stage, the weakly coordinated OAc(-) (the second acetate group) activates the ortho-C-H bond of the substrate and transfers the H-atom from the C-atom to the bound N-atom of the ligand. As a result, a new Pd-C bond is formed and the carbamate is converted from X-type to L-type ligand. The absolute configuration of the products that are predicted on the basis of the calculated energies of the transition states matches the experimental data. The calculated enantioselectivity is also comparable with the experimental result. On the basis of these data, the origin of the enantioselectivity can be largely attributed to steric repulsions in the transition states.     

Studies on the mechanism of aldehyde oxidase and xanthine oxidase

DFT calculations support a concerted mechanism for xanthine oxidase and aldehyde oxidase hydride displacement from the sp(2) carbon of 6-substituted 4-quinazolinones. The variations in transition state structure show that C-O bond formation is nearly complete in the transition state and the transition state changes are anti-Hammond with the C-H and C-O bond lengths being more product-like for the faster reactions. The C-O bond length in the transition state is around 90% formed. However, the C-H bond is only about 80% broken. This leads to a very tetrahedral transition state with an O-C-N angle of 109 degrees. Thus, while the mechanism is concerted, the antibonding orbital of the C-H bond that is broken is not directly attacked by the nucleophile and instead hydride displacement occurs after almost complete tetrahedral transition state formation. In support of this the C=N bond is lengthened in the transition state indicating that attack on the electrophilic carbon occurs by addition to the C=N bond with negative charge increasing on the nitrogen. Differences in experimental reaction rates are accurately reproduced by these calculations and tend to support this mechanism.     

Hydrofluoroarylation of alkynes with fluoroarenes

A combination of Ni(cod)(2) and PCyp(3) is found to be an effective catalyst for chemoselective activation of the C-H bond of fluoroarenes over C-F bonds followed by insertion of alkynes to allow direct alkenylation of the electron-deficient arenes. The characteristics of the reactions are: a C-H bond ortho to a fluorine substituent is selectively activated; the reactivity of fluorobenzenes is roughly proportional to the number of fluorine atoms. The reaction conditions tolerate a broad range of both alkynes and fluoroarenes containing both electron-withdrawing and -donating groups, thus allowing efficient synthesis of a variety of substituted ethenes containing a fluoroaryl motif in high regio- and stereoselective manners. Mechanistic studies including both labeling experiments and stoichiometric reactions reveal that oxidative addition of C-H bonds in fluoroarenes to nickel(0) is kinetically highly facile whereas that of C-F bonds is thermodynamically favoured.     

Scope and mechanism of the C-H bond activation reactivity within a supramolecular host by an iridium guest: a stepwise ion pair guest dissociation mechanism

A chiral self-assembled supramolecular M(4)L(6) assembly has been shown to be a suitable host for a series of reactive monocationic half-sandwich iridium guests 1, 3, and 4 that are capable of activating C-H bonds. Upon encapsulation, selective C-H bond activation of organic substrates occurs. Precise size and shape selectivity are observed in the C-H bond activation of aldehydes and ether substrates. The reactions exhibit significant kinetic diastereoselectivities. Thermodynamic studies have shown that the iridium starting materials and products are bound strongly by the host assembly. The encapsulation process is largely entropy-driven. Kinetic investigations with water-soluble phosphine traps and added salts have provided evidence for a unique stepwise mechanism of guest dissociation for [4 subset Ga(4)L(6)]. Iridium guest 4 first dissociates from the host cavity to form an ion pair with the host exterior. This species then fully dissociates from the host exterior into the bulk solution. Model ion pair intermediates were characterized directly with (1)H NMR NOESY techniques. The rate of iridium guest dissociation is slower than the rate observed for the C-H bond activation processes, indicating that the selective C-H bond activation reactivity occurs within the cavity of the supramolecular host.     

Mechanism of C[bond]H bond activation/C[bond]C bond formation reaction between diazo compound and alkane catalyzed by dirhodium tetracarboxylate

The B3LYP density functional studies on the dirhodium tetracarboxylate-catalyzed C-H bond activation/C-C bond formation reaction of a diazo compound with an alkane revealed the energetics and the geometry of important intermediates and transition states in the catalytic cycle. The reaction is initiated by complexation between the rhodium catalyst and the diazo compound. Driven by the back-donation from the Rh 4d(xz) orbital to the C[bond]N sigma*-orbital, nitrogen extrusion takes place to afford a rhodium[bond]carbene complex. The carbene carbon of the complex is strongly electrophilic because of its vacant 2p orbital. The C[bond]H activation/C[bond]C formation proceeds in a single step through a three-centered hydride transfer-like transition state with a small activation energy. Only one of the two rhodium atoms works as a carbene binding site throughout the reaction, and the other rhodium atom assists the C[bond]H insertion reaction. The second Rh atom acts as a mobile ligand for the first one to enhance the electrophilicity of the carbene moiety and to facilitate the cleavage of the rhodium[bond]carbon bond. The calculations reproduce experimental data including the activation enthalpy of the nitrogen extrusion, the kinetic isotope effect of the C[bond]H insertion, and the reactivity order of the C[bond]H bond.     

Density functional study of the sigma and pi bond activation at the Pd=X (X = Sn, Si, C) bonds of the (H2PC2H4PH2)Pd=XH2 complexes. Is the bond cleavage homolytic or heterolytic?

The mechanism for the activation of the sigma bonds, the O-H of H2O, C-H of CH4, and the H-H of H2, and the pi bonds, the C[triple bond]C of C2H2, C=C of C2H4, and the C=O of HCHO, at the Pd=X (X = Sn, Si, C) bonds of the model complexes (H2PC2H4PH2)Pd=XH2 5 has been theoretically investigated using a density functional method (B3LYP). The reaction is significantly affected by the electronic nature of the Pd=X bond, and the mechanism is changed depending on the atom X. The activation of the O-H bond with the lone pair electron is heterolytic at the Pd=X (X = Sn, Si) bonds, while it is homolytic at the Pd=C bond. The C-H and H-H bonds without the lone pair electron are also heterolytically activated at the Pd=X bonds independent of the atom X, where the hydrogen is extracted as a proton by the Pd atom in the case of X = Sn, Si and by the C atom in the case of X=C because the nucleophile is switched between the Pd and X atoms depending on the atom X. In contrast, the pi bond activation of C[triple bond]C and C=C at the Pd=Sn bond proceeds homolytically, and is accompanied by the rotation of the (H2PC2H4PH2)Pd group around the Pd-Sn axis to successfully complete the reaction by both the electron donation from the pi orbital to Sn p orbital and the back-donation from the Pd dpi orbital to the pi orbital. On the other hand, the activation of the C=O pi bond with the lone pair electron at the Pd=Sn bond has two reaction pathways: one is homolytic with the rotation of the (H2PC2H4PH2)Pd group and the other is heterolytic without the rotation. The role of the ligands controlling the activation mechanism, which is heterolytic or homolytic, is discussed.     

Toward selective reactions with C-H bonds: a rationale for the regio- and stereochemistry of dichlorocarbene insertions into cyclic hydrocarbons

DFT calculations have been performed to study the course of dichlorocarbene insertion reactions into alkanes and to better understand the regio- and stereoselectivities observed. At the B3LYP/6-31G(d) level of theory, the selectivity of dichlorocarbene insertions into a number of hydrocarbons agrees well with the obtained experimental results. The reactivity of a specific C-H bond is determined by the capacity of the remaining alkyl fragment to effectively delocalize the partial positive charge buildup during the reaction. This activity can readily be estimated by calculation of the hydride transfer potential (HTP). A comparison with the structure and the stability of the corresponding cation is useful to emphasize the origins of the selectivity. Dichlorocarbene is also predicted to react efficiently with acidic C-H bonds through a nucleophilic-electrophilic mechanism. In principle, an attack of a carbene on an appropriately substituted three-membered ring may lead to fragmentation of the molecule.     

Infrared Spectra of CH(3)-MH through Methane Activation by Laser-Ablated Sn, Pb, Sb, and Bi Atoms

Methane activation has been carried out by laser-ablated Sn, Pb, Sb, and Bi atoms. All four metals generate the insertion complex (CH(3)-MH), but subsequent H-migration from C to M to form CH(2)-MH(2) and CH-MH(3) complexes is not observed. Our previous and present experimental and computational results indicate that the higher oxidation state complexes become less favored with increasing atomic mass in groups 14 and 15, which is opposite the general trend found for transition metals. The C-H bond insertion evidently occurs during reaction on sample condensation, and the product dissociates on broad-band photolysis afterward. The insertion complex contains a near right angle C-M-H moiety because of high p contribution from the metal center to the C-M and M-H bonds unlike many transition-metal analogues. The computed methylidene structures for these main group metals are not agostic possibly because of the absence of valence d-orbitals.     

Activation of C-H, C-C and C-I bonds by Pd and cis-Pd(CO)2I2. Catalyst-substrate adaptation

We have studied the oxidative addition reactions of methane and ethane C-H, ethane C-C and iodomethane C-I bonds to Pd and cis-Pd(CO)₂I₂ at the ZORA-BP86/TZ(2)P level of relativistic density functional theory (DFT). Our purpose, besides exploring these particular model reactions, is to understand how the mechanism of bond activation changes as the catalytically active species changes from a simple, uncoordinated metal atom to a metal-ligand coordination complex. For both Pd and cis-Pd(CO)₂I₂, direct oxidative insertion (OxIn) is the lowest-barrier pathway whereas nucleophilic substitution (S_N2) is highly endothermic, and therefore not competitive. Introducing the ligands, i.e., going from Pd to cis-Pd(CO)₂I₂, causes a significant increase of the activation and reaction enthalpies for oxidative insertion and takes away the intrinsic preference of Pd for C-I over C-H activation. Obviously, cis-Pd(CO)₂I₂ is a poor catalyst in terms of activity as well as selectivity for one of the three bonds studied. However, its exploration sheds light on features in the process of catalytic bond activation associated with the increased structural and mechanistic complexity that arises if one goes from a monoatomic model catalysts to a more realistic transition-metal complex. First, in the transition state (TS) for oxidative insertion, the C-X bond to be activated can have, in principle, various different orientations with respect to the square-planar cis-Pd(CO)₂I₂ complex, e.g., C-X or X-C along an I-Pd-CO axis, or in between two I-Pd-CO axes. Second, at variance to the uncoordinated metal atom, the metal complex may be deformed due to the interaction with the substrate. This leads to a process of mutual adjustment of catalyst and substrate that we designate catalyst-substrate adaptation. The latter can be monitored by the Activation Strain model in which activation energies ΔE^≠ are decomposed into the activation strain of and the stabilizing TS interaction between the reactants in the activated complex: .     

Computational study on the mechanism and selectivity of C-H bond activation and dehydrogenative functionalization in the synthesis of rhazinilam

The key platinum mediated C-H bond activation and functionalization steps in the synthesis of (-)-rhazinilam (Johnson, J. A.; Li, N.; Sames, D. J. Am. Chem. Soc. 2002, 124, 6900) were investigated using the M06 and B3LYP density functional approximation methods. This computational study reveals that ethyl group dehydrogenation begins with activation of a primary C-H bond in preference to a secondary C-H bond in an insertion/methane elimination pathway. The C-H activation step is found to be reversible while the methane elimination (reductive elimination) transition state controls rate and diastereoselectivity. The chiral oxazolinyl ligand induces ethyl group selectivity through stabilizing weak interactions between its phenyl group (or cyclohexyl group) and the carboxylate group. After C-H activation and methane elimination steps, Pt-C bond functionalization occurs through β-hydride elimination to give the alkene platinum hydride complex.