Chirality effects on the IRMPD spectra of basket resorcinarene/nucleoside complexes

The IRMPD spectra of the ESI-formed proton-bound complexes of the R,R,R,R- and S,S,S,S-enantiomers of a bis(diamido)-bridged basket resorcin[4]arene (R and S) with cytosine (1), cytidine (2), and cytarabine (3) were measured in the region 2800-3600 cm(-1). Comparison of the IRMPD spectra with the corresponding ONIOM (B3LYP/6-31(d):UFF)-calculated absorption frequencies allowed the assessment of the vibrational modes that are responsible for the observed spectroscopic features. All of the complexes investigated, apart from [R?H?3](+), showed similar IRMPD spectra, which points to similar structural and conformational landscapes. Their IRMPD spectra agree with the formation of several isomeric structures in the ESI source, wherein the N(3)-protonated guest establishes noncovalent interactions with the host amidocarbonyl groups that are either oriented inside the host cavity or outside it between one of the bridged side-chains and the upper aromatic nucleus. The IRMPD spectrum of the [R?H?3](+) complex was clearly different from the others. This difference is attributed to the effect of intramolecular hydrogen-bonding interactions between the C(2')-OH group and the aglycone oxygen atom of the nucleosidic guest upon repulsive interactions between the same oxygen atom and the aromatic rings of the host.     

Illuminating metal-ion sensors: benzimidazolesulfonamide metal complexes

The synthesis, structure, and solution spectroscopy of several (2-sulfonamidophenyl)benzimidazole metal complexes are reported. These ligands, which have been reported as selective molecular sensors for Zn(2+), readily form complexes with Co(2+), Ni(2+), Cu(2+), and Zn(2+). Surprisingly, the ligand adopts different binding modes depending on the metal ion. The work here provides insight into the coordination chemistry of these ligands, which may allow for the development of improved metal-ion sensors and metalloprotein inhibitors.     

IRMPD spectroscopy of anionic group II metal nitrate cluster ions

Anionic group II metal nitrate clusters of the formula [M₂(NO₃)₅]⁻, where M₂ = Mg₂, MgCa, Ca₂, and Sr₂, are investigated by infrared multiple photon dissociation (IRMPD) spectroscopy to obtain vibrational spectra in the mid-IR region. The IR spectra are dominated by the symmetric and the antisymmetric nitrate stretches, with the latter split into high and low-frequency components due to the distortion of nitrate anion symmetry by interactions with the cation. Density functional theory (DFT) is used to predict geometries and vibrational spectra for comparison to the experimental spectra. Calculations yield two stable isomers: the first one contains two terminal nitrate anions on each cation and a single bridging nitrate (“mono-bridging”), while the second structure features a single terminal nitrate on each cation with three bridging nitrate ligands (“tri-bridging”). The tri-bridging isomer is calculated to be lower in energy than the mono-bridging one for all species. Theoretical spectra of the tri-bridging structure provide a better qualitative match to the experimental infrared spectra of [Mg₂(NO₃)₅]⁻ and [MgCa(NO₃)₅]⁻. However, the profile of the low-frequency ν ₃ band for the Mg₂ complex suggests a third possible isomer not predicted by theory. The IRMPD spectra of the Ca₂ and Sr₂ complexes are better reconciled by a weighted summation of the spectra of both isomers suggesting that a mixture of structures is present.     

Structure of sodiated octa-glycine: IRMPD spectroscopy and molecular modeling

The structure of the sodiated peptide GGGGGGGG-Na⁺ or G₈-Na⁺ was investigated by infrared multiple photon dissociation (IRMPD) spectroscopy and a combination of theoretical methods. IRMPD was carried out in both the fingerprint and N—H/O—H stretching regions. Modeling used the polarizable force field AMOEBA in conjunction with the replica-exchange molecular dynamics (REMD) method, allowing an efficient exploration of the potential energy surface. Geometries and energetics were further refined at B3LYP-D and MP2 quantum chemical levels. The IRMPD spectra indicate that there is no free C-terminus OH and that several N—Hs are free of hydrogen bonding, while several others are bound, however not very strongly. The structure must then be either of the charge solvation (CS) type with a hydrogen-bound acidic OH, or a salt bridge (SB). Extensive REMD searches generated several low-energy structures of both types. The most stable structures of each type are computed to be very close in energy. The computed energy barrier separating these structures is small enough that G₈-Na⁺ is likely fluxional with easy proton transfer between the two peptide termini. There is, however, good agreement between experiment and computations in the entire spectral range for the CS isomer only, which thus appears to be the most likely structure of G₈-Na⁺ at room temperature.     

Photoacoustic spectroscopy study of neodymium complexes with alanine,valine, phenylalanine and tryptophan

Neodymium complexes with amino acids: Nd(Ala)(3)Cl(3).3H(2)O, Nd(Val)(3)Cl(3).3H(2)O, Nd(Phe)Cl(3).5H(2)O and Nd(Trp)(3)Cl(3).3H(2)O (Ala: L-alanine, Val: L-valine, Phe: L-phenylalanine, Trp: L-tryptophan) are synthesized and their photoacoustic (PA) spectra are reported. The nephelauxetic ratio beta, bonding parameter b(1/2) and Sinha parameter delta are calculated based on their PA spectra. The variation of these parameters and correlation of them with the nature of metal-ligand bonding are discussed. The PA intensity analysis of the f-f transitions of neodymium ion is carried out by calculating the intensity branching vector. The environmental effect on the f-f transitions of neodymium ion is also studied. The branching vectors of the f-f transitions of Nd(Ala)(3)Cl(3).3H(2)O and Nd(Val)(3)Cl(3).3H(2)O are similar, which indicates the perturbation of the two ligand fields is similar. The branching vectors of energy levels 4G(5/2)+(2)G(7/2) of Nd(Phe)Cl(3).5H(2)O and Nd(Trp)(3)Cl(3).3H(2)O increase remarkably compared with those of Nd(Ala)(3)Cl(3).3H(2)O and Nd(Val)(3)Cl(3).3H(2)O. As the degree of covalency increases, the oscillator strength of the hypersensitive transition exhibits a corresponding increase. The relaxation process of Nd(Ala)(3)Cl(3).3H(2)O is established through its PA and electron absorption spectroscopy (EAS). A method used to resolve the PA amplitude spectrum is suggested. With the phase spectrum, PA absorption bands of Nd(Trp)(3)Cl(3).3H(2)O are resolved well in the region of ligand absorption.     

Photodissociation spectroscopy of trapped protonated tryptophan

We have coupled a quadrupole ion trap with a frequency doubled optical parametric oscillator laser. The photodissociation spectrum of the protonated tryptophan ion from 215 to 320 nm is reported. The yields of fragmentation on each mass channel as a function of the laser wavelength were obtained. We also report experiments involving multiple stages of laser induced dissociation and discuss possible structures for the fragmentation products.     

Potentiometric-spectroscopic evaluation of metal-ion complexes by humic fractions extracted from corn tissue

Humic fraction (HF) functional group-type and content are expected to depend on molecular size, which in turn, is expected to influence formation of heavy-metal complexes. In this study, corn (Zea mays L.) stalks and leaves were decomposed for an 8-month period to produce water-soluble humic substances. These substances were separated into three water-soluble fractions, HF1, HF2 and HF3, from highest to lowest relative molecular size. Functional group determination showed that carboxylic, and phenolic OH acidity increased as relative molecular size of humic fractions decreased. We also observed decreasing C/O ratios from larger to smaller corn tissue-derived humic fractions, whereas N/C and H/C ratios remained relatively unaffected. Furthermore, using potentiometric titration and FTIR spectroscopy we studied formation of Ca2+-, Cd2+-, and Cu2+-humic fraction complexes and how they were affected by pH and molecular size. We determined that metal-humic complexes exhibited at least two types of functional group-sites with respect to Ca2+, Cd2+, and Cu2+ complexation. Strength of metal-ion humic complexes followed the order Cu2+ > Cd2+ > Ca2+ and was affected by pH, especially for low affinity sites. Carboxylic groups were most likely the dominant group-sites involved in complex formation. Magnitude of the metal-humic formation constants in the logarithmic form at the lowest equilibrium metal-ion concentration, under the various pH values tested, varied from 5.39 to 5.90 for Ca2+, 5.36 to 6.01 for Cd2+, and 6.93 to 7.71 for Cu2+. Furthermore, the formation constants appeared to be positively influenced by decreasing molecular size of water-soluble humic fraction, and increasing pH. However, our molecular spectra showed that the pKa of corn humic fractions increased with decreasing relative molecular size and that Cu2+ was more covalently bonded by humic fractions than were Ca2+ and Cd2+, and the nature of the covalent bond character was independent of pH.     

IR-spectroscopic characterization of acetophenone complexes with Fe+, Co+, and Ni+ using free-electron-laser IRMPD

The gas-phase complexes M(+)(acet)(2), where M is Fe, Co, or Ni and acet is acetophenone, were studied spectroscopically by infrared multiple-photon dissociation (IRMPD) supported by density functional (DFT) computations. The FELIX free electron laser was used to give tunable radiation from approximately 500 to 2200 cm(-1). The spectra were interpreted to determine the metal-ion binding sites on the ligands (oxygen (O) or ring (R)) and to see if rearrangement of the ligand(s) to toluene plus CO occurred. For Ni(+), O binding was found to predominate (similar to the previously studied Cr(+) case), with less than approximately 10% of R-bound ligands in the population. For Co(+), a roughly equal mixture of R-bound and O-bound ligands was present; based on the computed thermochemistry, the OR complex was considered likely to predominate. Fe(+) complexes appeared largely O-bound, but with clear evidence for some R-binding. The exceptionally large extent of R binding for Co(+) highlights the special affinity of this metal ion for aromatic ring ligands. In contrast, the predominant O binding for Ni(+) emphasizes the especially high metal-ion affinity of the O site of acetophenone compared with other ligands such as anisole where R binding of Ni(+) predominates. The spectra did not indicate significant intracomplex rearrangement of ligands to toluene plus CO, and in particular for the Co(+) case the absence of a metal-bound C triple bond O stretching peak near 2100 cm(-1) strongly ruled out such a rearrangement.     

Monitoring transport phenomena of paramagnetic metal-ion complexes inside catalyst bodies with magnetic resonance imaging

An indirect magnetic resonance imaging (MRI) method has been developed to determine in a noninvasive manner the distribution of paramagnetic Co2+ complexes inside Co/Al2O3 catalyst extrudates after impregnation with Co2+/citrate solutions of different pH and citrate concentrations. UV/Vis/NIR microspectroscopic measurements were carried out simultaneously to obtain complementary information on the nature of the Co2+ complexes. In this way, it could be confirmed that the actual distribution of Co2+ inside the extrudates could be derived from the MRI images. By combining these space- and time-resolved techniques, information was obtained on both the strength and the mode of interaction between [Co(H2O)6]2+ and different Co2+ citrate complexes with the Al2O(3) support. Complexation of Co2+ by citrate was found to lead to a stronger interaction of Co with the support surface and formation of an eggshell distribution of Co2+ complexes after impregnation. By addition of free citrate and by changing the pH of the impregnation solution, it was possible to obtain the rather uncommon egg-yolk and egg-white distributions of Co2+ inside the extrudates after impregnation. In other words, by carefully altering the chemical composition and pH of the impregnation solution, the macrodistribution of Co2+ complexes inside catalyst extrudates could be fine-tuned from eggshell over egg white and egg yolk to uniform.     

Electrospray-ionization mass spectrometry for the detection of discrete peptide/metal-ion complexes involving multiple cysteine (sulfur) ligands.

Conditions have been developed to characterize the reversible interaction of one or more Zn(II) ions with cysteine (sulfur) ligands on metal-binding peptides by electrospray-ionization (ES) mass spectrometry. A 71-residue peptide with two separate clusters of four cysteine residues was selected as a model to optimize both the solution and electrospray variables most likely to affect the detection of stable cysteine (sulfur) ligand/Zn interactions. By infusing peptide in water alone, stable electrospray and ion signals were produced in both the absence and presence of up to 100 microM zinc sulfate. In the absence of Zn(II), the calculated mass of the fully reduced peptide (8248.5 Da) was observed (8248.4 +/- 0.4 Da). In the presence of Zn(II), peptides with zero, one and two bound Zn atoms were detected; all three species were present in several different charge states. The overall charge envelope was typically unchanged in the presence of Zn; the charge-state optimum (10+) observed for this peptide was apparently unaffected by the presence of bound Zn. The interaction of Zn(II) ions with sulfur ligands in this peptide appeared to result in tetracoordinate covalent bonds.(ABSTRACT TRUNCATED AT 250 WORDS)     

Jet spectroscopy of anthracene-alkane complexes

The fluorescence excitation spectra are reported for complexes of anthracene with n-alkanes. The spectra have only weak low-frequency mode structure, which indicates that the complexation geometries are stable with respect to excitation of the anthracene host. At the 2:1 complexation level, the spectra indicate that the complexation geometry changes over from trans, which is favoured for short alkanes, to the cis form for alkanes longer than heptane. This behaviour is attributed to increased guest-guest interaction, which favours the formation of alkane dimers on the anthracene surface.     

杂环化合物的红外多光子解离机理的研究

采用TEA CO_2激光器研究了1,4-二氧六环、吡咯烷和噻吩等杂环化合物的红外多光子解离过程,探讨了解离机理,给出解离率与激光能流的关系。解离阈值分别为0.85、1.0、1.5J/cm~(-2)。     

近红外光谱法测定5-羟基色氨酸的含量

本文利用近红外光谱法建立了5-羟基色氨酸的偏最小二乘(PLS)定量模型。采用相关数法选择波段以及二阶导数、Norris derivative平滑滤波进行数据预处理,所建校正模型的R为0.99907,RMSEC为0.0638,RMSEP为0.0675。经验证模型的预测性能良好,为5-HTP的快速测定提供了一种方法。     

Electronic spectroscopy of cold, protonated tryptophan and tyrosine

We report here a new method to obtain electronic spectra of biomolecular ions that are produced in the gas phase by electrospray and cooled to approximately 10 K in a 22-pole ion trap, and we demonstrate this technique by applying it to protonated tryptophan and tyrosine. Cooling in the trap greatly simplifies the spectrum of protonated tyrosine, which exhibits a well-defined band origin and clearly resolved low frequency vibrational bands. In contrast, the spectrum of protonated tryptophan exhibits only broad features, even at low temperatures, suggesting that a fast nonradiative process broadens the individual vibronic features, even upon excitation at the electronic band origin. The method demonstrated here should be applicable to a wide variety of biological molecules.     

Study of substituted pentacyanoferrate /II/ complexes by Mössbauer spectroscopy

The⁵⁷Fe Mössbauer spectra of substituted pentacyanoferrate /II/ complexes [/CN/₅ Fe^II L]^3– have been obtained for L=adenine, guanine, purine, caffeine, ethylene sulphide, dimethyl sulphoxide, and ammonia. The Mössbauer parameters are utilized to classify the various ligands according to their and bonding abilities. A linear correlation between the Mössbauer isomer shift and the tetragonal distortion caused by the ligand L is proposed. Comparison between this linear correlation and the approximative method of Wentworth and Piper¹ is made.     

Asymmetric hydrogenation of tryptophan precursors catalyzed by rhodium-DIOP complexes

Z-2-benzamido(acetamido)-3-(3-indolyl)-2-propenoic acids were hydrogenated with neutral and cationic rhodium(I) complexes containing the chiral diphosphine (–) or (+)–2,3-isopropylidene-2,3-dihydroxy-1,4-bis(diphenylphosphino)-butane [(–) or (+)–DIOP].

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Z-2- ()-3-(3-)-2- () (I), (–) (+)-2,3--2,3--1,4- ()-.

     

Gas-phase formation of large neutral alkaline-earth metal tryptophan complexes

We report on the first observation of isolated large neutral metal amino acid complexes such as Trp(n)Me(k), with Me=Ca, Ba, Sr, cluster combinations covering n=1...33, k=0..2 and masses beyond 6500 u. The cluster beam is generated using UV laser desorption from a mixed powder of alkaline-earth metal salts and tryptophan inside a cluster mixing channel. The particles are detected using VUV photoionization followed by time-of-flight mass spectroscopy. The enhanced stability of metal amino acid clusters over pure amino acid clusters is substantiated in molecular dynamics simulations by determining the gain in binding energy related to the inclusion of the metal atoms.     

C NMR spectroscopy XI. 4H-indenediiron pentacarbonyl complexes

The preparation of 4H-indenediiron pentacarbonyl complexes from 1H-indenes and diiron enneacarbonyl in hexane solution is described. The structures of the binuclear complexes are based upon spectroscopic analyses, particularly upon ¹H and ¹³C NMR data. At room temperature the carbonyl groups of the Fe(CO)₃ and Fe(CO)₂ moieties exhibit very different exchange rates without internuclear scrambling.