Mass spectrometry and combinatorial chemistry: new approaches for direct support-bound compound identification

Mass spectrometry is a powerful analytical tool allowing rapid and sensitive structural elucidation of a wide range of molecules issued from solution-, solid- and liquid-phase syntheses. Therefore, mass spectrometry has become the most widely used tool to probe combinatorial libraries. A significant portion of the reported combinatorial data are being produced using solid phase organic synthesis. In contrast to indirect strategies where the tethered structures were released from the support into solution to undergo standard mass spectrometric analyses, static - secondary ion mass spectrometry (S-SIMS) has enabled the identification of support-bound molecules without any chemical treatment of the resin bead. Such non-destructive characterization was applied at the bead level and facilitated the step-by-step monitoring of solid-phase peptide syntheses. Side-reactions were also detected. The relevance of S-SIMS in the rehearsal phase of combinatorial chemistry is demonstrated by comparison with infrared and nuclear magnetic resonance (NMR) spectroscopies, the two other techniques investigated in that field. An alternative to solid-phase synthesis consists of assembling molecules on a soluble polymer. This methodology is termed liquid-phase synthesis. Compound characterization is facilitated since the derivatized support is soluble in spectroscopic solvents used in NMR or in electrospray ionization mass spectrometry. The advantages and drawbacks of this approach will be discussed in terms of the direct monitoring of supported reactions during chemistry optimization and rehearsal library validation.     

C-F?Rb interaction in a fluorinated cage compound complex

A rubidium complex of a cage compound which is composed of fluorobenzene, ethylenedioxy, and bridgehead nitrogen donor units was prepared. The C-F?Rb⁺ interaction was clarified and evaluated for the first time by crystallographic analysis. The contribution degree of the three kinds of donor atoms for the cation binding was estimated by Brown’s bond valence equation.     

A new benzotriazole-mediated stereoflexible gateway to hetero-2,5-diketopiperazines

Open chain Cbz-L-aa(1)-L-Pro-Bt (Bt=benzotriazole) sequences were converted into either the corresponding trans- or cis-fused 2,5-diketopiperazines (DKPs) depending on the reaction conditions. Thermodynamic tandem cyclization/epimerization afforded selectively the corresponding trans-DKPs (69-75%). Complementarily, tandem deprotection/cyclization led to the cis-DKPs (65-72%). A representative set of proline-containing cis- and trans-DKPs has been prepared. A mechanistic investigation, based on chiral HPLC, kinetics, and computational studies enabled a rationalization of the results.     

Synthesis and characterization of a novel tetranuclear 5f compound: a new synthon for exploring U(IV) chemistry

In the course of structurally characterizing previously reported complexes based on the 1,2-bis(dimethylphosphino)ethane)) (dmpe) ligand ([(dmpe)(2)UCl(4)] (1) and [(dmpe)(2)UMe(4)] (2)), we find that adjusting the U/dmpe ratio leads to an unprecedented species. Whereas the use of two or three equivalents of dmpe relative to UCl(4) produces 1 as a blue-green solid, the use of a 1:1 dmpe/UCl(4) stoichiometry yields [(dmpe)(4)U(4)Cl(16)]·2CH(2)Cl(2)·(3·2CH(2)Cl(2)) as a green solid. In turn, 3 is used to prepare a mixed-chelating ligand complex featuring the bidentate ligand 4,4'-dimethyl-2,2'-bipyridine (dmbpy), [(dmpe)(dmbpy)UCl(4)] (4). The measured magnetic susceptibilities for 1-4 trend toward nonmagnetic ground states at low temperatures.     

p-Carborane: a new cage spacer for photoactive metal polypyridine dyads

The first example of a binuclear ruthenium complex involving the p-carborane framework in the bridging ligand is reported. The bridging ligand is a symmetric linear array comprising a central p-carborane unit, two p-phenylene spacers, and two 5-yl-2,2'-bipyridine coordinating units. A homobinuclear Ru(II) complex, with 2,2'-bipyridine as peripheral ligands, was synthesized and characterized. The Ru(II)-Ru(III) mixed-valence species, obtained by partial oxidation, has been investigated with steady-state and time-resolved techniques in CH3CN. The rate of photoinduced electron transfer is 2.3 x 10(8) s(-1).     

The C-F...cation interaction: an ammonium complex of a hexafluoro macrocyclic cage compound

An ammonium complex of the hexafluoro cage compound 1 was isolated and its structure was elucidated by X-ray crystallographic analysis. The C-F bonds are elongated by the complexation, which is clear evidence of C-F...cation interaction. The driving force of NH4(+) inclusion is the C-F cation interaction, but the C-F...HN+ hydrogen bond does not contribute to this complexation. The crystal structure of the NH4+ complex 1 shows short C-F...HN+ contacts (2.286-2.662 A). Furthermore, it shows that closer F...H(+)(-N) distances give a larger F...H(+)-N angle. Although such structural features seem to indicate the existence of C-F...HN+ hydrogen bonds, the spectral data (1H NMR, 19F VT-NMR, and IR spectroscopy) did not support the existence of hydrogen bonds. Thermodynamic parameters, log K(s) (4.6 +/- 0.1, 298 K), deltaH (-5.3 +/- 0.1 kcal mol(-1)), and deltaS (3.2 +/- 0.3 cal mol(-1) K(-1)), of the complexation were obtained in CDCl3/CD3CN mixture.     

A 'chemically-gated' photoresponsive compound as a visible detector for organophosphorus nerve agents

We describe a versatile and convenient visible detection method for organophosphorus compounds based on a colorless 'pro-photoresponsive' organic molecule that undergoes photochemical ring-closing to produce a colored isomer only after it reacts with vapors of the phosphorylating agent.     

Lead-oriented synthesis: a new opportunity for synthetic chemistry

The pharmaceutical industry remains solely reliant on synthetic chemistry methodology to prepare compounds for small-molecule drug discovery programmes. The importance of the physicochemical properties of these molecules in determining their success in drug development is now well understood but we present here data suggesting that much synthetic methodology is unintentionally predisposed to producing molecules with poorer drug-like properties. This bias may have ramifications to the early hit- and lead-finding phases of the drug discovery process when larger numbers of compounds from array techniques are prepared. To address this issue we describe for the first time the concept of lead-oriented synthesis and the opportunity for its adoption to increase the range and quality of molecules used to develop new medicines.     

Kowist: a computer-assisted systematic approach to finding new compound classes of pesticides

A large collection of chemical compounds and their test data in plant protection was evaluated and explored for hidden classes of pesticides which has not been noticed because by chance no strinkingly active representative had been tested. Special methods were developed in order to correlate, with reasonable computer effort, a maximum (10⁵) of compound classes with the activities of their members. A dialog system was created for the evaluation of the results by the bench chemist. This system is also useful for surveying well-known pesticide classes in order to discover promising gaps in their “chemical spaces”, i.e., new leads.