Unimolecular rearrangement of α-silylcarbenium ions. An ab initio study

The unimolecular rearrangements of hydrogen, methyl and phenyl groups at the Si atom in α-silylcarbenium ions have been investigated using an ab initio molecular orbital method. MP2/6–31 + G^*//HF/6–31G^* calculations predict that all three groups migrate from the Si to an adjacent C_α with no energy barrier. Thus, the silicenium ion is the only stable species in each potential energy surface. The conformation of the benzylsilicenium ion, (C₆H₅)CH₂−SiH₂⁺, indicates that the phenyl ring is significantly bent toward the silyl cationic center in order to interact with the vacant 3p(Si⁺) orbital. In contrast to MP2 results, Hartree-Fuck calculations (both HF/3–21G^* and HF/6–31G^* levels) predict small energy barriers for 1,2-migrations of H and Me (1.4 kcal mol⁻¹ for H migration, and 1.5 kcal mol⁻¹ for Me migration, respectively, at the HF/6–31G^* level). This difference provides convincing evidence that the incorporation of electron correlation is of particular importance in describing the potential energy surface for the rearrangement of α-silylcarbenium ions to silicenium ions. The results of the calculations have also been applied to the possible rearrangement mechanism of α-chlorosilanes to chlorosilanes, assuming that the experimental conditions are favorable toward the generation of ionic species. Various factors which may govern the migratory aptitudes of various R groups, i.e. (1) activation energies, (2) overall reaction energies and (3) the conformational preference of reactants have been investigated. The calculated activation energy obtained, namely the energy for the generation of the silicenium ion and the C⁻¹ ion from an α-chlorosilane, is consistent with the experimental migratory aptitude in the gas phase observed in mass spectrometers.     

β‐Aminoacrolein: An ab initio,AIM and NBO study

The molecular structure and the intramolecular hydrogen bonding of β‐aminoacrolein and its simple derivatives were investigated at the MP2 and B3LYP levels of theory using the standard 6‐311++G(d, p) basis set. The “atoms in molecules” or AIM theory of Bader which is based on topological properties of the electron density (ρ), was used. Additionally, an analysis of the critical points was performed to study the nature hydrogen bonding in these systems. Natural bond orbital (NBO) analysis was also carried out for to better comprehend the nature of the intramolecular interactions in β‐aminoacrolein and its derivatives. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Defective α‐Fe2O3(0001): An ab Initio Study

By using density functional theory calculations at the PBE+U level, we investigated the properties of hematite (0001) surfaces decorated with adatoms/vacancies/substituents. For the most stable surface termination over a large range of oxygen chemical potentials (${\mu _{\rm{O}} }$ ), the vacancy formation and adsorption energies were determined as a function of ${\mu _{\rm{O}} }$ . Under oxygen‐rich conditions, all defects are metastable with respect to the ideal surface. Under oxygen‐poor conditions, O vacancies and Fe adatoms become stable. Under ambient conditions, all defects are metastable; in the bulk, O vacancies form more easily than Fe vacancies, whereas at the surface the opposite is true. All defects, that is, O and Fe vacancies, Fe and Al adatoms, and Al substituents, induce important modifications to the geometry of the surface in their vicinity. Dissociative adsorption of molecular oxygen is likely to be exothermic on surfaces with Fe/Al adatoms or O vacancies.     

An ab initio study of the geometry and energy of six planar conformers of β-hydroxyacrolein

Ab initio calculations with full geometry optimization have been carried out on the planar cCc, cTc, tTc, tCt, tTt, and cCt conformers of β-hydroxyacrolein using the 4-21G basis set, and on the cCc and cCt conformers using the 4-31G basis set. The hydrogen-bonded cCc conformer is the most stable and the cCt conformer the least stable, with the other conformers following the above sequence. β-Hydroxy substitution has scarcely any influence on the geometry of the trans-acrolein structure, whereas the geometry of the cis-acrolein structure shows significant changes which depend on whether the O? H group is cis or trans with respect to the CHO group about the C?C bond. The ΔE_T values for cis → trans isomerization about the C? C bond in cCt and cTc support the hypothesis that these changes in geometry are the result of a destabilizing interaction in cCt and a stabilizing interaction in cTc. The geometry of the hydrogen-bonded structure cCc sets it apart from all the other conformers: it has by far the longest C?C, the longest C?O, the longest O? H, the shortest C? C, and the shortest C? O. Its formation from cCt involves a lengthening of C?C, C?O, and O? H and a shortening of C? C and C? O, indicating a delocalization of charge within the ring. 4-21G calculations have also been made for a distorted cCt structure that has the same bond lengths and angles as the equilibrium cCc structure, and the distortion energy, cCt (equm. geom.) → cCt (distorted geom.), is found to be +13.1 kJ mole^?1. Taking the energy of this distorted cCt structure as the baseline, the hydrogen-bonding energy in cCc is found to be —80.3 kJ mole^?1.     

Chiral Fluorinated α‐Sulfonyl Carbanions: Enantioselective Synthesis and Electrophilic Capture,Racemization Dynamics,and Structure

Enantiomerically pure triflones R¹CH(R²)SO₂CF₃ have been synthesized starting from the corresponding chiral alcohols via thiols and trifluoromethylsulfanes. Key steps of the syntheses of the sulfanes are the photochemical trifluoromethylation of the thiols with CF₃Hal (Hal=halide) or substitution of alkoxyphosphinediamines with CF₃SSCF₃. The deprotonation of RCH(Me)SO₂CF₃ (R=CH₂Ph, iHex) with nBuLi with the formation of salts [RC(Me)? SO₂CF₃]Li and their electrophilic capture both occurred with high enantioselectivities. Displacement of the SO₂CF₃ group of (S)‐MeOCH₂C(Me)(CH₂Ph)SO₂CF₃ (95 % ee) by an ethyl group through the reaction with AlEt₃ gave alkane MeOCH₂C(Me)(CH₂Ph)Et of 96 % ee. Racemization of salts [R¹C(R²)SO₂CF₃]Li follows first‐order kinetics and is mainly an enthalpic process with small negative activation entropy as revealed by polarimetry and dynamic NMR (DNMR) spectroscopy. This is in accordance with a C_α? S bond rotation as the rate‐determining step. Lithium α‐(S)‐trifluoromethyl‐ and α‐(S)‐nonafluorobutylsulfonyl carbanion salts have a much higher racemization barrier than the corresponding α‐(S)‐tert‐butylsulfonyl carbanion salts. Whereas [PhCH₂C(Me)SO₂tBu]Li/DMPU (DMPU = dimethylpropylurea) has a half‐life of racemization at ?105 °C of 2.4 h, that of [PhCH₂C(Me)SO₂CF₃]Li at ?78 °C is 30 d. DNMR spectroscopy of amides (PhCH₂)₂NSO₂CF₃ and (PhCH₂)N(Ph)SO₂CF₃ gave N? S rotational barriers that seem to be distinctly higher than those of nonfluorinated sulfonamides. NMR spectroscopy of [PhCH₂C(Ph)SO₂R]M (M=Li, K, NBu₄; R=CF₃, tBu) shows for both salts a confinement of the negative charge mainly to the C_α atom and a significant benzylic stabilization that is weaker in the trifluoromethylsulfonyl carbanion. According to crystal structure analyses, the carbanions of salts {[PhCH₂C(Ph)SO₂CF₃]Li? L }₂ ( L =2 THF, tetramethylethylenediamine (TMEDA)) and [PhCH₂C(Ph)SO₂CF₃]NBu₄ have the typical chiral C_α? S conformation of α‐sulfonyl carbanions, planar C_α atoms, and short C_α? S bonds. Ab initio calculations of [MeC(Ph)SO₂tBu]^? and [MeC(Ph)SO₂CF₃]^? showed for the fluorinated carbanion stronger n_C→σ* and n_O→σ* interactions and a weaker benzylic stabilization. According to natural bond orbital (NBO) calculations of [R¹C(R²)SO₂R]^? (R=tBu, CF₃) the n_C→σ*_{S? R} interaction is much stronger for R=CF₃. Ab initio calculations gave for [MeC(Ph)SO₂tBu]Li ? 2 Me₂O an O,Li,C_α contact ion pair (CIP) and for [MeC(Ph)SO₂CF₃]Li ? 2 Me₂O an O,Li,O CIP. According to cryoscopy, [PhCH₂C(Ph)SO₂CF₃]Li, [iHexC(Me)SO₂CF₃]Li, and [PhCH₂C(Ph)SO₂CF₃]NBu₄ predominantly form monomers in tetrahydrofuran (THF) at ?108 °C. The NMR spectroscopic data of salts [R¹(R²)SO₂R³]Li (R³=tBu, CF₃) indicate that the dominating monomeric CIPs are devoid of C_α? Li bonds.     

Intramolecular chelation of Zn2+ by α‐ and β‐mercaptocarboxamides. A parallel ab initio and polarizable molecular mechanics investigation. Assessment of the role of multipole transferability

α‐ and β‐mercaptocarboxamides constitute the Zn²⁺‐ligating entity of several highly potent metalloenzyme inhibitors. We have studied their interaction energies with Zn²⁺ using the polarizable molecular mechanics procedure SIBFA, and compared them to the corresponding ab initio supermolecule ones. Such validations are necessary to subsequently undertake simulations on complexes of Zn²⁺–metalloenzymes with inhibitors. If the distributed multipoles and polarizabilities are those derived for each ligand in its appropriate Zn²⁺‐binding conformation, a close reproduction of the ab initio binding energies is afforded. However, this representation is not tractable upon increasing the size of the ligands and/or to explore a continuum of binding conformations. This makes it necessary to construct the ligands by resorting to a library of constitutive fragments, namely in this case methanethiolate, formamide, and methane covalently connected together. A close reproduction of the ab initio interaction energies is enabled, but only if the ligand–ligand interactions are computed simultaneously with those occurring with Zn²⁺. This representation accounts for the nonadditivity occurring in the Zn²⁺–methanethiolate–formamide complex, and justifies the use of the distributed multipoles on the fragments for the construction of larger and flexible molecules. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1038–1047, 2001     

Chiral Lithiated Allylic α‐Sulfonyl Carbanions: Experimental and Computational Study of Their Structure,Configurational Stability,and Enantioselective Synthesis

X‐ray crystal structure analysis of the lithiated allylic α‐sulfonyl carbanions [CH₂?CHC(Me)SO₂Ph]Li ? diglyme, [cC₆H₈SO₂tBu]Li ? PMDETA and [cC₇H₁₀SO₂tBu]Li ? PMDETA showed dimeric and monomeric CIPs, having nearly planar anionic C atoms, only O?Li bonds, almost planar allylic units with strong C?C bond length alternation and the s‐trans conformation around C1?C2. They adopt a C1?S conformation, which is similar to the one generally found for alkyl and aryl substituted α‐sulfonyl carbanions. Cryoscopy of [EtCH?CHC(Et)SO₂tBu]Li in THF at 164 K revealed an equilibrium between monomers and dimers in a ratio of 83:17, which is similar to the one found by low temperature NMR spectroscopy. According to NMR spectroscopy the lone‐pair orbital at C1 strongly interacts with the C?C double bond. Low temperature ⁶Li,¹H NOE experiments of [EtCH?CHC(Et)SO₂tBu]Li in THF point to an equilibrium between monomeric CIPs having only O?Li bonds and CIPs having both O?Li and C1?Li bonds. Ab initio calculation of [MeCH?CHC(Me)SO₂Me]Li ? (Me₂O)₂ gave three isomeric CIPs having the s‐trans conformation and three isomeric CIPs having the s‐cis conformation around the C1?C2 bond. All s‐trans isomers are more stable than the s‐cis isomers. At all levels of theory the s‐trans isomer having O?Li and C1?Li bonds is the most stable one followed by the isomer which has two O?Li bonds. The allylic unit of the C,O,Li isomer shows strong bond length alternation and the C1 atom is in contrast to the O,Li isomer significantly pyramidalized. According to NBO analysis of the s‐trans and s‐cis isomers, the interaction of the lone pair at C1 with the π* orbital of the CC double bond is energetically much more favorable than that with the “empty” orbitals at the Li atom. The C1?S and C1?C2 conformations are determined by the stereoelectronic effects n_C–σ_SR* interaction and allylic conjugation. ¹H DNMR spectroscopy of racemic [EtCH?CHC(Et)SO₂tBu]Li, [iPrCH?CHC(iPr)SO₂tBu]Li and [EtCH?C(Me)C(Et)SO₂tBu]Li in [D₈]THF gave estimated barriers of enantiomerization of ΔG^≠=13.2 kcal mol^?1 (270 K), 14.2 kcal mol^?1 (291 K) and 14.2 kcal mol^?1 (295 K), respectively. Deprotonation of sulfone (R)‐EtCH?CHCH(Et)SO₂tBu (94 % ee) with nBuLi in THF at ?105 °C occurred with a calculated enantioselectivity of 93 % ee and gave carbanion (M)‐[EtCH?CHC(Et)SO₂tBu]Li, the deuteration and alkylation of which with CF₃CO₂D and MeOCH₂I, respectively, proceeded with high enantioselectivities. Time‐dependent deuteration of the enantioenriched carbanion (M)‐[EtCH?CHC(Et)SO₂tBu]Li in THF gave a racemization barrier of ΔG^≠=12.5 kcal mol^?1 (168 K), which translates to a calculated half‐time of racemization of t_1/2=12 min at ?105 °C.     

Absolute Konfiguration der enantiomeren α-CyclogeraniumsäUren, α-Cyclogeraniale, α-Jonone, γ-Jonone, α-und ϵ-Carotine

By chemical correlation with manool and ambrein the absolute configurations of the enantiomeric α-cyclogeranic acids, α-cyclogeranials, α-ionones and α- and ?-carotenes have been elucidated.     

Dual Functionalization of α‐Monoboryl Carbanions through Deoxygenative Enolization with Carboxylic Acids

A dual functionalization of 1,1‐diborylalkanes through deoxygenative enolization with carboxylic acids was developed. 1,1‐Diborylalkanes were activated by MeLi to generate α‐monoboryl carbanions. In situ IR spectroscopy indicated an interaction between carboxylic acid and 1,1‐diborylalkane before addition of the activation reagent. Release of the active α‐monoboryl carbanion from the masked form was necessary for its reaction with carboxylate to afford enolate species. Electrophilic trapping of enolate species with various electrophiles achieved dual functionalization of 1,1‐diborylalkanes to afford a variety of α‐mono, di‐, and tri‐substituted ketones.     

Variable ζ calculation for self-consistent screening parameters in ab initio molecular theory

A resolution of Roothaan's HF–SCF–LCAO–MO equations is proposed in which atomic orbital exponents (ζ) are made dependent on the molecular charge distribution and included in the self-consistent scheme. Screening parameters so obtained are self-consistent with the molecular orbital coefficients and compare closely to optimum orbital exponents found by other methods. The technique is applied to the ground, lowest positive, and lowest negative ion states of the hydride series LiH, BH, and HF. Calculated potential curves are used to define purely theoretical values for the vertical and adiabatic ionization energies and electron affinities. Predictions are compared to experimental values where available.     

Syntheses of methyl α-dl-mycaminoside, methyl α-dl-oleandroside, methyl β-dl-cymaroside, methyl α-dl-tyveloside and methyl α-dl-chromoside C

Five rare hexoses, which are components of antibiotics or cardiac glycosides, have been synthesized as methyl glycosides through a common intermediate methyl 2,3-dehydro-2,3,6-trideoxy-α-dl glucopyranoside (7). Epoxidation and subsequent treatment with dimethylamine of7 afforded methyl α-dl-mycaminoside (9). The addition reaction of MeOH to12 gave methyl α-dl-oleandroside (15) and methyl β-dl-cymaroside (17). The hydroxymercuration and subsequent reduction of12 afforded methyl α-dl-chromoside C (19) and methyl β-dl-tyveloside (25).     

Ab initio calculations on 5α-androstane

The electronic structure of 5α-androstane, the parent hydrocarbon of the hormonal steroids, has been computed by ab initio SCF methods in an STO -3G basis. The results are compared with existing MNDO computations and are used to discuss long-range electronic interactions between distant substituents that might be appended to rings A and D of 5α-androstane. It is thought that these interactions are mediated by the ribbonlike MO 'S of the parent molecule.     

α-Heteroatom-Substituted 1-Alkenyllithium Reagents: Carbanions and Carbenoids for C–C Bond Formation

Carbenoid, electrophilic and carbanionic, nucleophilic character is shown by compounds 1 , which bear a lithium atom and an electronegative element X as leaving group at the vinyl carbon center. Now that structural investigations have contributed significantly to their understanding, these ambiphilic, thermally unstable compounds are increasingly being used as reagents for synthetic purposes.